FvH4_3g38700

Phosphoinositide phospholipase C

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
32987476 .. 32990140
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38700.t1

Sequence Viewer

Length: 1611 bp
ATGGCCAACAATAAGCAGTCTTTCAAGGACCGCTGCTGTTTCGAAAAAATATTCAGGTTCAAGGCCGCAGAGCCTCCTGAAGATATCAAGAAAATGTTTGATATGTATGCCGAAAACGGCACCATTTCCCTCGATGGCCTTTTCAGATTTCTGATTGAGTCTCAAGGAGAAGATGATGCCACCAAAGAAGATGCTCAGGCCATTTTCGACAGTCTCAAGCAACTCAAAATTTTCCAGAGGAAGGGCCTCCAACTTGATTCTTTCTTTCGGTATCTCTTTGGTGATCTTAACCCTCCAATCTTTCCCAAGGTGAATCATGACATGAACGCTCCATTGTCTCATTATTTCCTCTTCACCGGCCATAACTCATACCTGACTGAAAATCAACTCAGCAGTGATTGCAGTGTCAAGCCAATTATCCAGGCACTGCAACGAGGTGTTCGAGTTATCCAATTAGATTTGTGGCCTAATTCTAAAAAGAATGGCATCGTTGTTCGTCATGCAGGGACATTGACTCGTCCGGTTGAACTCAACAAATGCTTGCGTGCTATCAAGGACAATGGTTTTACTGCTTATGAATATCCTGTTGTAATAACATTTGAAGACCACTTAACTTCAGAGCTTCAAGCCAAAGTGTCCGAGATGGTGAAAGCAACATTTGGAGATATGCTCCACGTCCCGGACTCGGAATTTTTACCGGAATTCCTTTCACCTGAAATATTAAAGAGAAAGGTTTTGATTTCAACCAAGCCACCGGAGTATGATGAAATTCATAGGCAGAAGGACTCTGGAGCCAGTGATAAGGATGGTGAAGAAGGTGATCCGGATGAAGATGAGGAGAATCCTACTCTACAATATAAGCATTTAATTGCAATCGATGCTGGAAATCCGAAAGGGGGGTTAGATATGTTGCATATTGATCCTACAAAAGTCAGAAGTCTTAGCTTGAGCGAGCAAGAACTCGAGCTCGCATCGAAATCTCGTGCAACAGATATTCTTAGGTTTACAGAGAAAAACTTGTTAAGGATATATCCCAAGGGCACACGCTTGGACTCATCGAATTATGATCCGATGCTTGGATGGATGCATGGAGCTATCAAATGGTCGCGTTCAATATGCAAAGCTAATGGAGGTTGTGGTTATGTGAAAAAACCACGTTTTTTACTTAGCAGTAGTCCAGATAATGAGGTTTTTAATCCTGAAAAATCGTATCGTGAGGTAAAAGTTTACATGGGTGAAGGATGGCATTCAGATTTTCACCGCACAAACTTTCATTGTTATTCTCCACCTGATATGTTTGTGAAGGTTGGAATTGCTGGAGTCCCAAGGGACACAGTGATGGAGGAGACTAAGGCAATCGAGAACGAGTGGATTCCGGTGTGGAATGAGGGGTTCAGCTTCCCATTGAGTGTTCCAAAACTAGCTGTGCTTAGAATAGAAGTTAAAGAGCAGCACAGTTCTGAAAATCATGACTTTGGTGGCCAAACATGTCTGCCAATATCAGAGCTCAGAACTGGGTTTAGAGCAGTTCCTCTGCATGATAAAAAAGGGGTAAGGTATAAATCAGTGAAGCTTCTTATGAGATTTGATTTTGAAAGTCCTGACTCCTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

61.18

Weight (kDa)

6.02

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 108 - 250 1.9e-46 Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y PF00387 313 - 386 2.9e-11 Phosphatidylinositol-specific phospholipase C, Y domain
C2 PF00168 427 - 505 2.7e-11 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 1 cut(s) 1108
AccIII TCCGGA 1 cut(s) 823
AciI CCGC 3 cut(s) 31, 66, 1261
AclWI GGATC 3 cut(s) 815, 914, 1061
AcoI YGGCCR 3 cut(s) 3, 358, 1480
AcsI RAATTY 4 cut(s) 228, 689, 701, 768
AcuI CTGAAG 2 cut(s) 99, 600
AfiI CCNNNNNNNGG 5 cut(s) 241, 679, 685, 896, 1076
AflIII ACRYGT 1 cut(s) 1487
AgsI TTSAA 8 cut(s) 25, 61, 527, 602, 626, 744, 1113, 1595
AjiI CACGTC 1 cut(s) 676
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 9 cut(s) 622, 945, 967, 1094, 1124, 1398, 1424, 1507, 1573
AluI AGCT 9 cut(s) 622, 945, 967, 1094, 1124, 1398, 1424, 1507, 1573
Alw21I GWGCWC 2 cut(s) 969, 1509
Alw26I GTCTC 4 cut(s) 165, 218, 342, 1340
AlwI GGATC 3 cut(s) 815, 914, 1061
AlwNI CAGNNNCTG 1 cut(s) 427
Ama87I CYCGRG 1 cut(s) 962
Aor13HI TCCGGA 1 cut(s) 823
AoxI GGCC 8 cut(s) 3, 63, 136, 198, 244, 358, 464, 1480
ApeKI GCWGC 2 cut(s) 33, 1450
ApoI RAATTY 4 cut(s) 228, 689, 701, 768
AspS9I GGNCC 2 cut(s) 28, 244
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 9 cut(s) 293, 322, 346, 658, 702, 821, 830, 1247, 1250
AsuII TTCGAA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 962
AvaII GGWCC 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 1043
BalI TGGCCA 2 cut(s) 5, 1482
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 969, 1509
BauI CACGAG 1 cut(s) 981
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 969, 1509
BbvI GCAGC 2 cut(s) 20, 1462
BccI CCATC 6 cut(s) 128, 637, 800, 1074, 1236, 1333
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 4 cut(s) 165, 218, 342, 1340
BfaI CTAG 1 cut(s) 1421
BisI GCNGC 3 cut(s) 34, 66, 1451
BlsI GCNGC 3 cut(s) 35, 67, 1452
Bme1390I CCNGG 2 cut(s) 422, 680
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 1 cut(s) 962
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 2 cut(s) 28, 244
BmiI GGNNCC 2 cut(s) 121, 793
BmrFI CCNGG 2 cut(s) 422, 680
BmrI ACTGGG 1 cut(s) 1524
BmsI GCATC 7 cut(s) 166, 181, 495, 868, 980, 1062, 1074
BmuI ACTGGG 1 cut(s) 1524
BpiI GAAGAC 1 cut(s) 609
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpmI CTGGAG 2 cut(s) 810, 1338
Bpu10I CCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 42
BpuEI CTTGAG 3 cut(s) 147, 200, 967
BpuMI CCSGG 1 cut(s) 680
Bsa29I ATCGAT 1 cut(s) 876
BsaJI CCNNGG 3 cut(s) 306, 1035, 1325
BsaWI WCCGGW 5 cut(s) 520, 697, 754, 823, 1375
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 679, 685, 896, 1076
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 795, 1519
BseAI TCCGGA 1 cut(s) 823
BseBI CCWGG 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 876
BseDI CCNNGG 3 cut(s) 306, 1035, 1325
BseGI GGATG 5 cut(s) 811, 832, 1085, 1089, 1247
BseLI CCNNNNNNNGG 5 cut(s) 241, 679, 685, 896, 1076
BseMII CTCAG 3 cut(s) 209, 403, 1522
BseNI ACTGG 2 cut(s) 795, 1519
BseRI GAGGAG 2 cut(s) 851, 1358
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 2 cut(s) 20, 1462
Bsh1236I CGCG 1 cut(s) 1108
BshFI GGCC 8 cut(s) 5, 65, 138, 200, 246, 360, 466, 1482
BshNI GGYRCC 1 cut(s) 119
BshVI ATCGAT 1 cut(s) 876
BsiHKAI GWGCWC 2 cut(s) 969, 1509
BsiHKCI CYCGRG 1 cut(s) 962
BsiSI CCGG 7 cut(s) 357, 521, 680, 698, 755, 824, 1376
BslFI GGGAC 4 cut(s) 520, 662, 1307, 1343
BslI CCNNNNNNNGG 5 cut(s) 241, 679, 685, 896, 1076
BsmAI GTCTC 4 cut(s) 165, 218, 342, 1340
BsmFI GGGAC 4 cut(s) 520, 662, 1307, 1343
BsmI GAATGC 1 cut(s) 1246
BsnI GGCC 8 cut(s) 5, 65, 138, 200, 246, 360, 466, 1482
BsoBI CYCGRG 1 cut(s) 962
Bsp119I TTCGAA 1 cut(s) 42
Bsp1286I GDGCHC 3 cut(s) 969, 1043, 1509
Bsp13I TCCGGA 1 cut(s) 823
Bsp143I GATC 4 cut(s) 283, 820, 919, 1066
BspACI CCGC 3 cut(s) 31, 66, 1261
BspANI GGCC 8 cut(s) 5, 65, 138, 200, 246, 360, 466, 1482
BspCNI CTCAG 3 cut(s) 208, 402, 1521
BspDI ATCGAT 1 cut(s) 876
BspEI TCCGGA 1 cut(s) 823
BspFNI CGCG 1 cut(s) 1108
BspHI TCATGA 2 cut(s) 316, 1468
BspLI GGNNCC 2 cut(s) 121, 793
BspPI GGATC 3 cut(s) 815, 914, 1061
BspT104I TTCGAA 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 2 cut(s) 795, 1519
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 306, 1035, 1325
BssMI GATC 4 cut(s) 283, 820, 919, 1066
BssSI CACGAG 1 cut(s) 981
BssT1I CCWWGG 3 cut(s) 306, 1035, 1325
Bst2BI CACGAG 1 cut(s) 981
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 3 cut(s) 212, 1336, 1457
Bst6I CTCTTC 1 cut(s) 356
BstAPI GCANNNNNTGC 2 cut(s) 399, 878
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 4 cut(s) 542, 546, 953, 969
BstDEI CTNAG 8 cut(s) 195, 389, 941, 998, 1166, 1350, 1430, 1508
BstF5I GGATG 5 cut(s) 811, 832, 1085, 1089, 1247
BstFNI CGCG 1 cut(s) 1108
BstKTI GATC 4 cut(s) 286, 823, 922, 1069
BstMAI GTCTC 4 cut(s) 165, 218, 342, 1340
BstMBI GATC 4 cut(s) 283, 820, 919, 1066
BstMWI GCNNNNNNNGC 2 cut(s) 399, 878
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 1491
BstSCI CCNGG 2 cut(s) 420, 678
BstSLI GKGCMC 1 cut(s) 1043
BstUI CGCG 1 cut(s) 1108
BstV1I GCAGC 2 cut(s) 20, 1462
BstV2I GAAGAC 1 cut(s) 609
Bsu15I ATCGAT 1 cut(s) 876
BsuRI GGCC 8 cut(s) 5, 65, 138, 200, 246, 360, 466, 1482
BsuTUI ATCGAT 1 cut(s) 876
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 5 cut(s) 811, 832, 1085, 1089, 1247
BtsI GCAGTG 3 cut(s) 400, 409, 425
BtsIMutI CAGTG 6 cut(s) 400, 409, 425, 802, 1341, 1572
Cac8I GCNNGC 4 cut(s) 542, 546, 953, 969
CaiI CAGNNNCTG 1 cut(s) 427
CciI TCATGA 2 cut(s) 316, 1468
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 28, 244
ClaI ATCGAT 1 cut(s) 876
CviAII CATG 8 cut(s) 317, 322, 500, 1088, 1231, 1469, 1488, 1538
DdeI CTNAG 8 cut(s) 195, 389, 941, 998, 1166, 1350, 1430, 1508
DpnI GATC 4 cut(s) 285, 822, 921, 1068
DpnII GATC 4 cut(s) 283, 820, 919, 1066
EaeI YGGCCR 3 cut(s) 3, 358, 1480
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Ecl136II GAGCTC 2 cut(s) 967, 1507
Eco130I CCWWGG 3 cut(s) 306, 1035, 1325
Eco24I GRGCYC 2 cut(s) 969, 1509
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 2 cut(s) 967, 1507
Eco57I CTGAAG 2 cut(s) 99, 600
Eco88I CYCGRG 1 cut(s) 962
EcoICRI GAGCTC 2 cut(s) 967, 1507
EcoO109I RGGNCCY 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 3 cut(s) 306, 1035, 1325
EcoT22I ATGCAT 1 cut(s) 1089
EcoT38I GRGCYC 2 cut(s) 969, 1509
ErhI CCWWGG 3 cut(s) 306, 1035, 1325
FaeI CATG 8 cut(s) 320, 325, 503, 1091, 1234, 1472, 1491, 1541
FaqI GGGAC 4 cut(s) 520, 662, 1307, 1343
FatI CATG 8 cut(s) 316, 321, 499, 1087, 1230, 1468, 1487, 1537
Fnu4HI GCNGC 3 cut(s) 34, 66, 1451
FokI GGATG 5 cut(s) 818, 839, 1092, 1096, 1254
FriOI GRGCYC 2 cut(s) 969, 1509
Fsp4HI GCNGC 3 cut(s) 34, 66, 1451
FspBI CTAG 1 cut(s) 1421
GluI GCNGC 3 cut(s) 34, 66, 1451
GsuI CTGGAG 2 cut(s) 810, 1338
HaeIII GGCC 8 cut(s) 5, 65, 138, 200, 246, 360, 466, 1482
HapII CCGG 7 cut(s) 357, 521, 680, 698, 755, 824, 1376
Hin1II CATG 8 cut(s) 320, 325, 503, 1091, 1234, 1472, 1491, 1541
HindIII AAGCTT 1 cut(s) 1571
HpaII CCGG 7 cut(s) 357, 521, 680, 698, 755, 824, 1376
HphI GGTGA 9 cut(s) 293, 322, 346, 658, 702, 821, 830, 1247, 1250
Hpy166II GTNNAC 2 cut(s) 1005, 1228
Hpy8I GTNNAC 2 cut(s) 1005, 1228
HpyAV CCTTC 5 cut(s) 235, 775, 809, 1232, 1297
HpyCH4III ACNGT 3 cut(s) 212, 1336, 1457
HpyCH4IV ACGT 2 cut(s) 675, 1156
HpyCH4V TGCA 9 cut(s) 402, 430, 503, 872, 913, 986, 1087, 1119, 1537
HpyF10VI GCNNNNNNNGC 2 cut(s) 399, 878
HpyF3I CTNAG 8 cut(s) 195, 389, 941, 998, 1166, 1350, 1430, 1508
HpySE526I ACGT 2 cut(s) 675, 1156
Hsp92II CATG 8 cut(s) 320, 325, 503, 1091, 1234, 1472, 1491, 1541
Kpn2I TCCGGA 1 cut(s) 823
Kzo9I GATC 4 cut(s) 283, 820, 919, 1066
LmnI GCTCC 4 cut(s) 334, 675, 791, 1091
Lsp1109I GCAGC 2 cut(s) 20, 1462
LweI GCATC 7 cut(s) 166, 181, 495, 868, 980, 1062, 1074
MaeI CTAG 1 cut(s) 1421
MaeII ACGT 2 cut(s) 675, 1156
MalI GATC 4 cut(s) 285, 822, 921, 1068
MboI GATC 4 cut(s) 283, 820, 919, 1066
MboII GAAGA 7 cut(s) 92, 182, 200, 343, 614, 824, 842
MhlI GDGCHC 3 cut(s) 969, 1043, 1509
MlsI TGGCCA 2 cut(s) 5, 1482
MluNI TGGCCA 2 cut(s) 5, 1482
MlyI GAGTC 7 cut(s) 167, 508, 677, 779, 1046, 1329, 1598
MmeI TCCRAC 2 cut(s) 274, 1288
Mox20I TGGCCA 2 cut(s) 5, 1482
Mph1103I ATGCAT 1 cut(s) 1089
MroI TCCGGA 1 cut(s) 823
MscI TGGCCA 2 cut(s) 5, 1482
MseI TTAA 7 cut(s) 288, 611, 722, 866, 1022, 1194, 1443
MslI CAYNNNNRTG 1 cut(s) 1337
Msp20I TGGCCA 2 cut(s) 5, 1482
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 7 cut(s) 357, 521, 680, 698, 755, 824, 1376
MspR9I CCNGG 2 cut(s) 422, 680
Mva1269I GAATGC 1 cut(s) 1246
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 1108
MwoI GCNNNNNNNGC 2 cut(s) 399, 878
NciI CCSGG 1 cut(s) 680
NdeII GATC 4 cut(s) 283, 820, 919, 1066
NlaIII CATG 8 cut(s) 320, 325, 503, 1091, 1234, 1472, 1491, 1541
NlaIV GGNNCC 2 cut(s) 121, 793
NsiI ATGCAT 1 cut(s) 1089
NspI RCATGY 1 cut(s) 1491
NspV TTCGAA 1 cut(s) 42
PaeR7I CTCGAG 1 cut(s) 962
PagI TCATGA 2 cut(s) 316, 1468
PciI ACATGT 1 cut(s) 1487
PcsI WCGNNNNNNNCGW 1 cut(s) 439
PctI GAATGC 1 cut(s) 1246
PfeI GAWTC 4 cut(s) 257, 313, 841, 1372
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 3 cut(s) 35, 67, 1452
PleI GAGTC 7 cut(s) 166, 508, 677, 779, 1046, 1328, 1598
PpsI GAGTC 7 cut(s) 166, 508, 677, 779, 1046, 1328, 1598
PscI ACATGT 1 cut(s) 1487
Psp124BI GAGCTC 2 cut(s) 969, 1509
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 121, 793
PspPI GGNCC 2 cut(s) 28, 244
PspXI VCTCGAGB 1 cut(s) 962
PstNI CAGNNNCTG 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 1337
SacI GAGCTC 2 cut(s) 969, 1509
SaqAI TTAA 7 cut(s) 288, 611, 722, 866, 1022, 1194, 1443
SatI GCNGC 3 cut(s) 34, 66, 1451
Sau3AI GATC 4 cut(s) 283, 820, 919, 1066
Sau96I GGNCC 2 cut(s) 28, 244
SchI GAGTC 7 cut(s) 167, 508, 677, 779, 1046, 1329, 1598
ScrFI CCNGG 2 cut(s) 422, 680
SduI GDGCHC 3 cut(s) 969, 1043, 1509
SfaNI GCATC 7 cut(s) 166, 181, 495, 868, 980, 1062, 1074
Sfr274I CTCGAG 1 cut(s) 962
SfuI TTCGAA 1 cut(s) 42
SinI GGWCC 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 962
SmiMI CAYNNNNRTG 1 cut(s) 1337
SmlI CTYRAG 4 cut(s) 162, 215, 946, 962
SmoI CTYRAG 4 cut(s) 162, 215, 946, 962
SsiI CCGC 3 cut(s) 31, 66, 1261
SspI AATATT 2 cut(s) 51, 720
SspMI CTAG 1 cut(s) 1421
SstI GAGCTC 2 cut(s) 969, 1509
StyD4I CCNGG 2 cut(s) 420, 678
StyI CCWWGG 3 cut(s) 306, 1035, 1325
TaaI ACNGT 3 cut(s) 212, 1336, 1457
TaiI ACGT 2 cut(s) 678, 1159
TaqI TCGA 9 cut(s) 42, 132, 207, 442, 876, 963, 974, 1058, 1359
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 4 cut(s) 257, 313, 841, 1372
Tru1I TTAA 7 cut(s) 288, 611, 722, 866, 1022, 1194, 1443
Tru9I TTAA 7 cut(s) 288, 611, 722, 866, 1022, 1194, 1443
TscAI CASTG 6 cut(s) 400, 409, 432, 802, 1341, 1572
TseI GCWGC 2 cut(s) 33, 1450
TspDTI ATGAA 6 cut(s) 338, 591, 761, 780, 843, 1262
TspRI CASTG 6 cut(s) 400, 409, 432, 802, 1341, 1572
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 4 cut(s) 228, 689, 701, 768
XceI RCATGY 1 cut(s) 1491
XhoI CTCGAG 1 cut(s) 962
XspI CTAG 1 cut(s) 1421
Zsp2I ATGCAT 1 cut(s) 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.