Rh5AG457100

Phosphoinositide phospholipase C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010550
Physical Location & Seq
Forward (+)
78366743 .. 78388793
22051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG457100.1

Sequence Viewer

Length: 1614 bp
ATGTCCACTAATAAGCAGTCTTTCAAGGTCTGCTTCTGTTTCAGAAGAATATTTAGGCTCAAGGTGGCAGAGCCTCCAGAAGATATCAAGAAAATGTTTGATATGTATGCTGAAAATGGTACCATCTCCCTCGATAACCTTCACAGCTTTCTGATTGAGTTTCAAGGAGAAGGTGAGGCCACCAAAGAAGATGCTCAGGCCATTTTCAACAGTCTCAAACATCTCAACATTTTTCAAAGAAAAGGCCTCCATCTTGATGCCTTCTTTCGATATCTCTTTGGTGATCTTAACCCTCCAATCTCTTCAAAGGTGCATCATGACATGAAAGCTCCATTGGCTCATTATTTCCTATACACCGGCCATAACTCATACCTGACTGGAAATCAACTCAGCAGTGACAGTAGTGTCTACCCAATCATCCAGGCACTCCTACGAGGCGTTCGAGTTATTGAATTAGATTTGTGGCCTAATTCTAAAAAGAATGGTGTCGAGGTTCGTCATGGAGGGACTTTGACTAGTTCGGTTGATCTCATCAAATGCTTGCATGCTATTAAGGACAATGCTTTTACTGCTTCTGAATATCCTGTTGTTATAACATTTGAAGACCACTTAACTTCAGATCTTCAAGCTAAAGTAGCCAAGATGGTGACTGAAACATTTGGAGATATGCTCTACGTCCCTAACTCGGAATTTTTAATGGAATTCCCTTCACCTGAAATATTAAAGAGAAAGGTTTTGATTTCAACCAAGCCACCAGAGTATCATGAAACTCAGAGGTCTGGAGCCACTGATAAGGATAGTGACGAAGATGATCCAGAAGAAGATGAGGAGAATGCTACTCTACAATATAAGCAGTTAATTGCAATCCATGCTGGAAAACCGAAAGGGGGGTCAGGGTTCGATATGTGGCATATTGATCCCATGAAAGTCAGACGTCTTAGCTTGAGCGAGCAACAACTCGAACGTGCATCAAAAACTCGTGGAACAGATATTGTTAGGTTTACACAAAGAAATTTGTTAAGGATATATCCCAAAGGTACACGTTTGGACTCATCAAATTATGACCCTATGCTTGGATGGAGCCATGGAGCTCAGATGGTCGCATTCAATATGCAAGGACATGGAAAGCATCTTCATATTATGGAAGGAATGTTCAGAGCTAATGGAGGTTGTGGTTATGTGAAAAAACCTGATTTTTTACTTACCAGCGGTCCAGATAATGAGGTTTTCAATCCTGAAAAATCGTACCGAGTTAGGCAAATCTTGAAGGTAAAAGTTTACATGGGCGAAGGATGGCATTCAGATTTCCCCCGTACACACTTTGATCTTTATTCTCCACCGGACTTTTTCGTGAGGGTTGGAATTGCTGGAGTCCCAATGGACACACTAATGGAGGAGACTAAGACAATCGAAGACGAGTGGATTCCAGTGTGGAATCAGGAGTTCAACTTCCCATTGAGTGTTCCAGAACTAGCTGTGCTTAGAATTGAAGTTAAAGAGTACGACAGTTCTGGAAATCATGACTTTGGTGGCCAAATATGTCTGCCAATATCAGAGCTTAGAACTGGGTTCAGAGCAGTTCCTCTGCATGATAAAAAAGGGGTAAGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004629 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008081 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009553 GO:0009555 GO:0009556 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010600 GO:0010601 GO:0010817 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034293 GO:0042221 GO:0042578 GO:0042742 GO:0043207 GO:0043934 GO:0044464 GO:0044703 GO:0046885 GO:0046886 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090354 GO:0090355 GO:0090567 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903046
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

537

Amino Acids

61.29

Weight (kDa)

6.17

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 108 - 250 7.5e-51 Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y PF00387 313 - 399 3.1e-29 Phosphatidylinositol-specific phospholipase C, Y domain
C2 PF00168 421 - 522 2.2e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AasI GACNNNNNNGTC 1 cut(s) 404
AatII GACGTC 1 cut(s) 937
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 408
AciI CCGC 1 cut(s) 1209
AclWI GGATC 2 cut(s) 806, 911
AcoI YGGCCR 2 cut(s) 358, 1531
AcsI RAATTY 3 cut(s) 689, 701, 1012
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 1 cut(s) 934
AfaI GTAC 5 cut(s) 121, 1039, 1247, 1315, 1502
AfiI CCNNNNNNNGG 3 cut(s) 685, 887, 1073
AflIII ACRYGT 1 cut(s) 1040
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AloI GAACNNNNNNTCC 2 cut(s) 1136, 1168
AluBI AGCT 8 cut(s) 147, 329, 629, 942, 1091, 1160, 1475, 1558
AluI AGCT 8 cut(s) 147, 329, 629, 942, 1091, 1160, 1475, 1558
Alw21I GWGCWC 1 cut(s) 1093
Alw26I GTCTC 2 cut(s) 218, 1391
AlwI GGATC 2 cut(s) 806, 911
AoxI GGCC 6 cut(s) 177, 198, 244, 358, 464, 1531
ApoI RAATTY 3 cut(s) 689, 701, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
Asp718I GGTACC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 1211
AsuHPI GGTGA 4 cut(s) 185, 293, 658, 702
AvaII GGWCC 1 cut(s) 1211
BaeI ACNNNNGTAYC 2 cut(s) 743, 776
BalI TGGCCA 1 cut(s) 1533
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 1093
BauI CACGAG 1 cut(s) 978
BbsI GAAGAC 2 cut(s) 609, 1419
Bbv12I GWGCWC 1 cut(s) 1093
BccI CCATC 6 cut(s) 131, 258, 637, 1071, 1090, 1287
BciT130I CCWGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 218, 1391
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 2 cut(s) 516, 1472
BglII AGATCT 1 cut(s) 619
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 1211
BmgT120I GGNCC 1 cut(s) 1211
BmiI GGNNCC 3 cut(s) 121, 784, 1082
BmrFI CCNGG 1 cut(s) 422
BmrI ACTGGG 1 cut(s) 1575
BmsI GCATC 5 cut(s) 181, 247, 322, 977, 1138
BmuI ACTGGG 1 cut(s) 1575
BpiI GAAGAC 2 cut(s) 609, 1419
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpmI CTGGAG 3 cut(s) 60, 801, 1389
Bpu10I CCTNAGC 1 cut(s) 195
BpuEI CTTGAG 2 cut(s) 44, 964
BsaHI GRCGYC 1 cut(s) 934
BsaJI CCNNGG 1 cut(s) 1084
BsaWI WCCGGW 1 cut(s) 1339
Bsc4I CCNNNNNNNGG 3 cut(s) 685, 887, 1073
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 382, 1427, 1570
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 1084
BseGI GGATG 3 cut(s) 417, 1082, 1298
BseLI CCNNNNNNNGG 3 cut(s) 685, 887, 1073
BseMII CTCAG 4 cut(s) 209, 403, 785, 1106
BseNI ACTGG 3 cut(s) 382, 1427, 1570
BseRI GAGGAG 2 cut(s) 842, 1409
BshFI GGCC 6 cut(s) 179, 200, 246, 360, 466, 1533
BshNI GGYRCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 1093
BsiSI CCGG 2 cut(s) 357, 1340
BslFI GGGAC 3 cut(s) 520, 662, 1358
BslI CCNNNNNNNGG 3 cut(s) 685, 887, 1073
BsmAI GTCTC 2 cut(s) 218, 1391
BsmFI GGGAC 3 cut(s) 520, 662, 1358
BsmI GAATGC 3 cut(s) 838, 1103, 1297
BsnI GGCC 6 cut(s) 179, 200, 246, 360, 466, 1533
Bsp1286I GDGCHC 1 cut(s) 1093
Bsp143I GATC 6 cut(s) 283, 526, 619, 811, 916, 1324
Bsp19I CCATGG 1 cut(s) 1084
BspACI CCGC 1 cut(s) 1209
BspANI GGCC 6 cut(s) 179, 200, 246, 360, 466, 1533
BspCNI CTCAG 4 cut(s) 208, 402, 784, 1105
BspHI TCATGA 3 cut(s) 316, 763, 1519
BspLI GGNNCC 3 cut(s) 121, 784, 1082
BspPI GGATC 2 cut(s) 806, 911
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 3 cut(s) 382, 1427, 1570
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 1084
BssMI GATC 6 cut(s) 283, 526, 619, 811, 916, 1324
BssNI GRCGYC 1 cut(s) 934
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 1 cut(s) 1084
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 3 cut(s) 212, 401, 1508
Bst6I CTCTTC 1 cut(s) 307
BstACI GRCGYC 1 cut(s) 934
BstAPI GCANNNNNTGC 1 cut(s) 869
BstC8I GCNNGC 3 cut(s) 542, 546, 950
BstDEI CTNAG 8 cut(s) 195, 389, 771, 938, 1092, 1401, 1481, 1559
BstDSI CCRYGG 1 cut(s) 1084
BstF5I GGATG 3 cut(s) 417, 1082, 1298
BstKTI GATC 6 cut(s) 286, 529, 622, 814, 919, 1327
BstMAI GTCTC 2 cut(s) 218, 1391
BstMBI GATC 6 cut(s) 283, 526, 619, 811, 916, 1324
BstMWI GCNNNNNNNGC 4 cut(s) 335, 569, 635, 869
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 420
BstV2I GAAGAC 2 cut(s) 609, 1419
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BsuRI GGCC 6 cut(s) 179, 200, 246, 360, 466, 1533
BtgI CCRYGG 1 cut(s) 1084
BtsCI GGATG 3 cut(s) 417, 1082, 1298
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 3 cut(s) 400, 786, 1434
Cac8I GCNNGC 3 cut(s) 542, 546, 950
CciI TCATGA 3 cut(s) 316, 763, 1519
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 1211
Csp6I GTAC 5 cut(s) 120, 1038, 1246, 1314, 1501
CviQI GTAC 5 cut(s) 120, 1038, 1246, 1314, 1501
DdeI CTNAG 8 cut(s) 195, 389, 771, 938, 1092, 1401, 1481, 1559
DpnI GATC 6 cut(s) 285, 528, 621, 813, 918, 1326
DpnII GATC 6 cut(s) 283, 526, 619, 811, 916, 1324
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 2 cut(s) 358, 1531
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 1091
Eco130I CCWWGG 1 cut(s) 1084
Eco147I AGGCCT 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 1093
Eco32I GATATC 2 cut(s) 85, 272
Eco47I GGWCC 1 cut(s) 1211
Eco53kI GAGCTC 1 cut(s) 1091
Eco57I CTGAAG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 1091
EcoRI GAATTC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 2 cut(s) 85, 272
EcoT14I CCWWGG 1 cut(s) 1084
EcoT38I GRGCYC 1 cut(s) 1093
ErhI CCWWGG 1 cut(s) 1084
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 3 cut(s) 520, 662, 1358
FblI GTMKAC 1 cut(s) 408
FokI GGATG 3 cut(s) 404, 1089, 1305
FriOI GRGCYC 1 cut(s) 1093
FspBI CTAG 2 cut(s) 516, 1472
GsuI CTGGAG 3 cut(s) 60, 801, 1389
HaeIII GGCC 6 cut(s) 179, 200, 246, 360, 466, 1533
HapII CCGG 2 cut(s) 357, 1340
Hin1I GRCGYC 1 cut(s) 934
HinfI GANTC 4 cut(s) 1049, 1371, 1423, 1435
HpaII CCGG 2 cut(s) 357, 1340
HphI GGTGA 4 cut(s) 185, 293, 658, 702
Hpy166II GTNNAC 6 cut(s) 6, 409, 1002, 1040, 1279, 1316
Hpy8I GTNNAC 6 cut(s) 6, 409, 1002, 1040, 1279, 1316
HpyAV CCTTC 7 cut(s) 149, 164, 271, 717, 1139, 1261, 1283
HpyCH4III ACNGT 3 cut(s) 212, 401, 1508
HpyCH4IV ACGT 4 cut(s) 675, 934, 964, 1042
HpyCH4V TGCA 6 cut(s) 313, 544, 863, 968, 1114, 1588
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 569, 635, 869
HpyF3I CTNAG 8 cut(s) 195, 389, 771, 938, 1092, 1401, 1481, 1559
HpySE526I ACGT 4 cut(s) 675, 934, 964, 1042
Hsp92I GRCGYC 1 cut(s) 934
KpnI GGTACC 1 cut(s) 123
Kzo9I GATC 6 cut(s) 283, 526, 619, 811, 916, 1324
LmnI GCTCC 4 cut(s) 334, 782, 1080, 1088
LweI GCATC 5 cut(s) 181, 247, 322, 977, 1138
MaeI CTAG 2 cut(s) 516, 1472
MaeII ACGT 4 cut(s) 675, 934, 964, 1042
MaeIII GTNAC 3 cut(s) 395, 646, 800
MalI GATC 6 cut(s) 285, 528, 621, 813, 918, 1326
MboI GATC 6 cut(s) 283, 526, 619, 811, 916, 1324
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 1093
MlsI TGGCCA 1 cut(s) 1533
MluCI AATT 9 cut(s) 452, 469, 689, 701, 858, 1012, 1057, 1362, 1485
MluNI TGGCCA 1 cut(s) 1533
MlyI GAGTC 2 cut(s) 1043, 1380
MmeI TCCRAC 1 cut(s) 1339
Mox20I TGGCCA 1 cut(s) 1533
MscI TGGCCA 1 cut(s) 1533
MseI TTAA 9 cut(s) 288, 552, 611, 695, 722, 857, 1019, 1494, 1612
MslI CAYNNNNRTG 2 cut(s) 255, 1388
Msp20I TGGCCA 1 cut(s) 1533
MspA1I CMGCKG 1 cut(s) 1209
MspI CCGG 2 cut(s) 357, 1340
MspR9I CCNGG 1 cut(s) 422
Mva1269I GAATGC 3 cut(s) 838, 1103, 1297
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 4 cut(s) 335, 569, 635, 869
NcoI CCATGG 1 cut(s) 1084
NdeII GATC 6 cut(s) 283, 526, 619, 811, 916, 1324
NlaIV GGNNCC 3 cut(s) 121, 784, 1082
NmuCI GTSAC 3 cut(s) 395, 646, 800
NspI RCATGY 1 cut(s) 548
PaeI GCATGC 1 cut(s) 548
PagI TCATGA 3 cut(s) 316, 763, 1519
PceI AGGCCT 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 439
PctI GAATGC 3 cut(s) 838, 1103, 1297
PfeI GAWTC 2 cut(s) 1423, 1435
PleI GAGTC 2 cut(s) 1043, 1379
PpsI GAGTC 2 cut(s) 1043, 1379
PsiI TTATAA 1 cut(s) 593
Psp124BI GAGCTC 1 cut(s) 1093
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 121, 784, 1082
PspPI GGNCC 1 cut(s) 1211
PsuI RGATCY 1 cut(s) 619
RsaI GTAC 5 cut(s) 121, 1039, 1247, 1315, 1502
RsaNI GTAC 5 cut(s) 120, 1038, 1246, 1314, 1501
RseI CAYNNNNRTG 2 cut(s) 255, 1388
SacI GAGCTC 1 cut(s) 1093
SaqAI TTAA 9 cut(s) 288, 552, 611, 695, 722, 857, 1019, 1494, 1612
Sau3AI GATC 6 cut(s) 283, 526, 619, 811, 916, 1324
Sau96I GGNCC 1 cut(s) 1211
SchI GAGTC 2 cut(s) 1043, 1380
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 1 cut(s) 1093
SfaNI GCATC 5 cut(s) 181, 247, 322, 977, 1138
SinI GGWCC 1 cut(s) 1211
SmiMI CAYNNNNRTG 2 cut(s) 255, 1388
SmlI CTYRAG 2 cut(s) 59, 943
SmoI CTYRAG 2 cut(s) 59, 943
SpeI ACTAGT 1 cut(s) 515
SphI GCATGC 1 cut(s) 548
Sse9I AATT 9 cut(s) 452, 469, 689, 701, 858, 1012, 1057, 1362, 1485
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 1 cut(s) 1209
SspI AATATT 2 cut(s) 51, 720
SspMI CTAG 2 cut(s) 516, 1472
SstI GAGCTC 1 cut(s) 1093
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 3 cut(s) 212, 401, 1508
TaiI ACGT 4 cut(s) 678, 937, 967, 1045
TaqI TCGA 7 cut(s) 132, 268, 442, 489, 900, 960, 1410
TasI AATT 9 cut(s) 452, 469, 689, 701, 858, 1012, 1057, 1362, 1485
TfiI GAWTC 2 cut(s) 1423, 1435
Tru1I TTAA 9 cut(s) 288, 552, 611, 695, 722, 857, 1019, 1494, 1612
Tru9I TTAA 9 cut(s) 288, 552, 611, 695, 722, 857, 1019, 1494, 1612
TscAI CASTG 3 cut(s) 400, 793, 1434
TseFI GTSAC 3 cut(s) 395, 646, 800
Tsp45I GTSAC 3 cut(s) 395, 646, 800
TspDTI ATGAA 4 cut(s) 338, 780, 938, 1124
TspRI CASTG 3 cut(s) 400, 793, 1434
VpaK11BI GGWCC 1 cut(s) 1211
XapI RAATTY 3 cut(s) 689, 701, 1012
XceI RCATGY 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 2 cut(s) 516, 1472
ZraI GACGTC 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.