RLG00000036101

Phosphoinositide phospholipase C

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
75746033 .. 75749254
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036101

Sequence Viewer

Length: 1674 bp
ATGTCCACCAATAAGCAGTCTTTCAAGGTCTGCTTCTGTTTCAGAAGAATATTTAGGCTCAAGGTGGCAGAGCCTCCGGAAGATATCAAGAAAATGTTTGATATGTATGCCGAAAATGGTGCCATCTCCCTGGATGACCTTCACAGCTTTCTGATTGACTTTCAAGGAGAAGGTGAGGCCACCAAAGAAGATGCTCAGGCCATTTTCAACAGTCTCAAACATCTCAACATTTTTCAAAGAAAAGGCCTCCATCTTGATGCCTTCTTTCGATATCTCTTTGGTGATCTTAACCCTCCAATCTCTTCGAAGGTGCATCATGACATGAAAGCTCCATTGGCTCACTATTTCCTATACACCGGCCATAACTCATACCTAACTGGAAATCAACTCAGCAGTGACAGTAGTGTCCACCCAATCATCCACGCACTCCAACGAGGCGTTCGAGTTATTGAATTAGATTTGTGGCCTAATTCTAAAAAGAATGGGGTCGAGGTTCGTCATGGAGGGACTTTGACTAGTTCGGTTGATCTCATCAAATGCTTGCATGCTATTAAGGACAATGCTTTTACTGCTTCTGAATATCCTGTTGTTATAACATTTGAAGACCACTTAACTTCAGATCTTCAAGCTAAAGTAGCCAAGATGGTGACTGAAACATTTGGAGATATGCTCTACGTCCCTAACTCGGAATTTTTAATGGAATTCCCTTCACCTGAAATATTAAAGAGAAAGGTTTTGATTTCAACCAAGCCACCGGAGTATCATGAACCTCAGAGGCGCAAGGACTCTGGAGCCACTGATAAGGATAGTGACGAGGATGATCCAGAAGAAGATGAGGAGAATGCTACTCTACAATATAAGCAGTTAATTGCAATCCATGCTGGAAAACCGAAAGGGGGGTCAGCAGGGGGGTTCGATATGTGGCATATTGATCCCATGAAAGTCAGACGTCTTAGCTTGAGCGAGCAACAACTTGAACGTGCATCAAAAACTCGTGGAACAGATATTGTTAGGTTTACTCAAAGAAATTTGTTAAGGATATATCCCAAGGGTACACGTTTGGACTCATCAAATTATGACCCTATGCTTGGATGGAGCCATGGAGCTCAGATGGTCGCATTCAATATGCAAGGACATGGAAAGCACCTTCATATTATGGAAGGACTGTTCAGAGCTAATGGAGGTTGTGGTTATGTGAAAAAACCTGATTTTTTACTTACCAGCGGTCCAGATAATGAGGTTTTCAATCCTGAAAAATCGTACCGAGTTAGACAAATCCTGAAGGTAAAAGTTTACATGGGCGAAGGATGGCATTCAGATTTCCACCGCACGCACTTTGATCTTTATTCTCCACCAGACTTTTTCGTGAGGGTTGGAATTGCTGGAGTCCCAAAGGACACAATGATGTTTGAGACCAAGCCGATCGAGGACGACTGGATTCCAGTGTGGAATGAGGAGTTCAGCTTCCCATTGAGTGTTCCAGAACTAGCTGTGCTTAGAGTTGAAGTTAAAGAGTATGACAATTCCGGAAATCATGACTTTGGTGGCCAAACATGTCTGCCAATATCAGAGCTCAGAACTGGGTTCAGAGCTGTTCCTCTGCATAGTAAAAGAGGGGTAAGGTATAAATCTGTGAAGCTGCTTATGAAATTTGGGTTTGAAAGTCCTGAGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

558

Amino Acids

63.5

Weight (kDa)

6.48

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 108 - 250 5e-51 Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y PF00387 318 - 404 1.6e-28 Phosphatidylinositol-specific phospholipase C, Y domain
C2 PF00168 426 - 527 6.9e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AasI GACNNNNNNGTC 1 cut(s) 404
AatII GACGTC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 119
AccIII TCCGGA 2 cut(s) 76, 1526
AciI CCGC 2 cut(s) 1224, 1327
AclWI GGATC 2 cut(s) 815, 926
AcoI YGGCCR 2 cut(s) 358, 1546
AcsI RAATTY 4 cut(s) 689, 701, 1027, 1649
AcuI CTGAAG 2 cut(s) 600, 1301
AcyI GRCGYC 1 cut(s) 949
AfaI GTAC 2 cut(s) 1054, 1262
AfiI CCNNNNNNNGG 3 cut(s) 685, 896, 1088
AflIII ACRYGT 2 cut(s) 1055, 1553
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 4 cut(s) 317, 349, 423, 455
AloI GAACNNNNNNTCC 2 cut(s) 1151, 1183
Alw21I GWGCWC 2 cut(s) 1108, 1575
Alw26I GTCTC 2 cut(s) 218, 1406
AlwI GGATC 2 cut(s) 815, 926
Aor13HI TCCGGA 2 cut(s) 76, 1526
AoxI GGCC 6 cut(s) 177, 198, 244, 358, 464, 1546
ApeKI GCWGC 1 cut(s) 1639
ApoI RAATTY 4 cut(s) 689, 701, 1027, 1649
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
AspLEI GCGC 1 cut(s) 780
AspS9I GGNCC 1 cut(s) 1226
AsuHPI GGTGA 4 cut(s) 185, 293, 658, 702
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 1226
BaeI ACNNNNGTAYC 2 cut(s) 743, 776
BalI TGGCCA 1 cut(s) 1548
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 1108, 1575
BauI CACGAG 1 cut(s) 993
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 1108, 1575
BbvI GCAGC 1 cut(s) 1626
BccI CCATC 6 cut(s) 131, 258, 637, 1086, 1105, 1302
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 218, 1406
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 2 cut(s) 516, 1487
BglII AGATCT 1 cut(s) 619
BisI GCNGC 1 cut(s) 1640
BlsI GCNGC 1 cut(s) 1641
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 1226
BmgT120I GGNCC 1 cut(s) 1226
BmiI GGNNCC 3 cut(s) 121, 793, 1097
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 1590
BmsI GCATC 4 cut(s) 181, 247, 322, 992
BmuI ACTGGG 1 cut(s) 1590
BpiI GAAGAC 1 cut(s) 609
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpmI CTGGAG 2 cut(s) 810, 1404
Bpu10I CCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 44, 979
BsaHI GRCGYC 1 cut(s) 949
BsaI GGTCTC 1 cut(s) 1406
BsaJI CCNNGG 3 cut(s) 129, 1047, 1099
BsaWI WCCGGW 3 cut(s) 76, 754, 1526
Bsc4I CCNNNNNNNGG 3 cut(s) 685, 896, 1088
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 4 cut(s) 382, 1439, 1442, 1585
BseAI TCCGGA 2 cut(s) 76, 1526
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 3 cut(s) 129, 1047, 1099
BseGI GGATG 5 cut(s) 139, 417, 823, 1097, 1313
BseLI CCNNNNNNNGG 3 cut(s) 685, 896, 1088
BseMII CTCAG 6 cut(s) 209, 403, 785, 1121, 1588, 1659
BseNI ACTGG 4 cut(s) 382, 1439, 1442, 1585
BseRI GAGGAG 2 cut(s) 851, 1469
BseXI GCAGC 1 cut(s) 1626
Bsh1285I CGRYCG 1 cut(s) 1425
BshFI GGCC 6 cut(s) 179, 200, 246, 360, 466, 1548
BshNI GGYRCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 1425
BsiHKAI GWGCWC 2 cut(s) 1108, 1575
BsiSI CCGG 4 cut(s) 77, 357, 755, 1527
BslFI GGGAC 3 cut(s) 520, 662, 1373
BslI CCNNNNNNNGG 3 cut(s) 685, 896, 1088
BsmAI GTCTC 2 cut(s) 218, 1406
BsmFI GGGAC 3 cut(s) 520, 662, 1373
BsmI GAATGC 3 cut(s) 847, 1118, 1312
BsnI GGCC 6 cut(s) 179, 200, 246, 360, 466, 1548
Bso31I GGTCTC 1 cut(s) 1406
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 1108, 1575
Bsp13I TCCGGA 2 cut(s) 76, 1526
Bsp143I GATC 7 cut(s) 283, 526, 619, 820, 931, 1339, 1422
Bsp19I CCATGG 1 cut(s) 1099
BspACI CCGC 2 cut(s) 1224, 1327
BspANI GGCC 6 cut(s) 179, 200, 246, 360, 466, 1548
BspCNI CTCAG 6 cut(s) 208, 402, 784, 1120, 1587, 1660
BspEI TCCGGA 2 cut(s) 76, 1526
BspHI TCATGA 3 cut(s) 316, 763, 1534
BspLI GGNNCC 3 cut(s) 121, 793, 1097
BspPI GGATC 2 cut(s) 815, 926
BspT104I TTCGAA 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 1406
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 4 cut(s) 382, 1439, 1442, 1585
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 129, 1047, 1099
BssMI GATC 7 cut(s) 283, 526, 619, 820, 931, 1339, 1422
BssNI GRCGYC 1 cut(s) 949
BssSI CACGAG 1 cut(s) 993
BssT1I CCWWGG 2 cut(s) 1047, 1099
Bst2BI CACGAG 1 cut(s) 993
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 3 cut(s) 212, 401, 1167
Bst6I CTCTTC 1 cut(s) 307
BstACI GRCGYC 1 cut(s) 949
BstAPI GCANNNNNTGC 1 cut(s) 878
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 4 cut(s) 542, 546, 965, 1331
BstDEI CTNAG 8 cut(s) 195, 389, 771, 953, 1107, 1496, 1574, 1668
BstDSI CCRYGG 1 cut(s) 1099
BstF5I GGATG 5 cut(s) 139, 417, 823, 1097, 1313
BstHHI GCGC 1 cut(s) 780
BstKTI GATC 7 cut(s) 286, 529, 622, 823, 934, 1342, 1425
BstMAI GTCTC 2 cut(s) 218, 1406
BstMBI GATC 7 cut(s) 283, 526, 619, 820, 931, 1339, 1422
BstMCI CGRYCG 1 cut(s) 1425
BstMWI GCNNNNNNNGC 4 cut(s) 335, 569, 635, 878
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 548, 1557
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 1626
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 1 cut(s) 619
BsuRI GGCC 6 cut(s) 179, 200, 246, 360, 466, 1548
BtgI CCRYGG 1 cut(s) 1099
BtsCI GGATG 5 cut(s) 139, 417, 823, 1097, 1313
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 3 cut(s) 400, 795, 1449
Cac8I GCNNGC 4 cut(s) 542, 546, 965, 1331
CciI TCATGA 3 cut(s) 316, 763, 1534
CfoI GCGC 1 cut(s) 780
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 1226
Csp6I GTAC 2 cut(s) 1053, 1261
CviQI GTAC 2 cut(s) 1053, 1261
DdeI CTNAG 8 cut(s) 195, 389, 771, 953, 1107, 1496, 1574, 1668
DpnI GATC 7 cut(s) 285, 528, 621, 822, 933, 1341, 1424
DpnII GATC 7 cut(s) 283, 526, 619, 820, 931, 1339, 1422
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 2 cut(s) 358, 1546
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Ecl136II GAGCTC 2 cut(s) 1106, 1573
Eco130I CCWWGG 2 cut(s) 1047, 1099
Eco147I AGGCCT 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 1108, 1575
Eco31I GGTCTC 1 cut(s) 1406
Eco32I GATATC 2 cut(s) 85, 272
Eco47I GGWCC 1 cut(s) 1226
Eco53kI GAGCTC 2 cut(s) 1106, 1573
Eco57I CTGAAG 2 cut(s) 600, 1301
EcoICRI GAGCTC 2 cut(s) 1106, 1573
EcoRI GAATTC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 2 cut(s) 85, 272
EcoT14I CCWWGG 2 cut(s) 1047, 1099
EcoT38I GRGCYC 2 cut(s) 1108, 1575
ErhI CCWWGG 2 cut(s) 1047, 1099
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 3 cut(s) 520, 662, 1373
Fnu4HI GCNGC 1 cut(s) 1640
FokI GGATG 5 cut(s) 146, 404, 830, 1104, 1320
FriOI GRGCYC 2 cut(s) 1108, 1575
Fsp4HI GCNGC 1 cut(s) 1640
FspBI CTAG 2 cut(s) 516, 1487
GlaI GCGC 1 cut(s) 779
GluI GCNGC 1 cut(s) 1640
GsuI CTGGAG 2 cut(s) 810, 1404
HaeIII GGCC 6 cut(s) 179, 200, 246, 360, 466, 1548
HapII CCGG 4 cut(s) 77, 357, 755, 1527
HhaI GCGC 1 cut(s) 780
Hin1I GRCGYC 1 cut(s) 949
Hin6I GCGC 1 cut(s) 778
HinP1I GCGC 1 cut(s) 778
HinfI GANTC 4 cut(s) 785, 1064, 1386, 1438
HpaII CCGG 4 cut(s) 77, 357, 755, 1527
HphI GGTGA 4 cut(s) 185, 293, 658, 702
Hpy166II GTNNAC 5 cut(s) 6, 409, 1017, 1055, 1294
Hpy8I GTNNAC 5 cut(s) 6, 409, 1017, 1055, 1294
HpyAV CCTTC 9 cut(s) 149, 164, 271, 301, 717, 1154, 1157, 1276, 1298
HpyCH4III ACNGT 3 cut(s) 212, 401, 1167
HpyCH4IV ACGT 4 cut(s) 675, 949, 979, 1057
HpyCH4V TGCA 6 cut(s) 313, 544, 872, 983, 1129, 1603
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 569, 635, 878
HpyF3I CTNAG 8 cut(s) 195, 389, 771, 953, 1107, 1496, 1574, 1668
HpySE526I ACGT 4 cut(s) 675, 949, 979, 1057
Hsp92I GRCGYC 1 cut(s) 949
HspAI GCGC 1 cut(s) 778
Kpn2I TCCGGA 2 cut(s) 76, 1526
Kzo9I GATC 7 cut(s) 283, 526, 619, 820, 931, 1339, 1422
LmnI GCTCC 4 cut(s) 334, 791, 1095, 1103
Lsp1109I GCAGC 1 cut(s) 1626
LweI GCATC 4 cut(s) 181, 247, 322, 992
MaeI CTAG 2 cut(s) 516, 1487
MaeII ACGT 4 cut(s) 675, 949, 979, 1057
MaeIII GTNAC 3 cut(s) 395, 646, 809
MalI GATC 7 cut(s) 285, 528, 621, 822, 933, 1341, 1424
MboI GATC 7 cut(s) 283, 526, 619, 820, 931, 1339, 1422
MboII GAAGA 8 cut(s) 57, 92, 200, 294, 614, 614, 839, 842
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 2 cut(s) 1108, 1575
MlsI TGGCCA 1 cut(s) 1548
MluNI TGGCCA 1 cut(s) 1548
MlyI GAGTC 3 cut(s) 779, 1058, 1395
MmeI TCCRAC 2 cut(s) 454, 1354
Mox20I TGGCCA 1 cut(s) 1548
MroI TCCGGA 2 cut(s) 76, 1526
MscI TGGCCA 1 cut(s) 1548
MseI TTAA 8 cut(s) 288, 552, 611, 695, 722, 866, 1034, 1509
MslI CAYNNNNRTG 2 cut(s) 255, 1403
Msp20I TGGCCA 1 cut(s) 1548
MspA1I CMGCKG 1 cut(s) 1224
MspI CCGG 4 cut(s) 77, 357, 755, 1527
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 3 cut(s) 847, 1118, 1312
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 335, 569, 635, 878
NcoI CCATGG 1 cut(s) 1099
NdeII GATC 7 cut(s) 283, 526, 619, 820, 931, 1339, 1422
NlaIV GGNNCC 3 cut(s) 121, 793, 1097
NmuCI GTSAC 3 cut(s) 395, 646, 809
NspI RCATGY 2 cut(s) 548, 1557
NspV TTCGAA 1 cut(s) 305
PaeI GCATGC 1 cut(s) 548
PagI TCATGA 3 cut(s) 316, 763, 1534
PceI AGGCCT 1 cut(s) 246
PciI ACATGT 1 cut(s) 1553
PcsI WCGNNNNNNNCGW 1 cut(s) 439
PctI GAATGC 3 cut(s) 847, 1118, 1312
PfeI GAWTC 1 cut(s) 1438
PkrI GCNGC 1 cut(s) 1641
Ple19I CGATCG 1 cut(s) 1425
PleI GAGTC 3 cut(s) 779, 1058, 1394
PpsI GAGTC 3 cut(s) 779, 1058, 1394
PscI ACATGT 1 cut(s) 1553
PsiI TTATAA 1 cut(s) 593
Psp124BI GAGCTC 2 cut(s) 1108, 1575
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 121, 793, 1097
PspPI GGNCC 1 cut(s) 1226
PsuI RGATCY 1 cut(s) 619
PvuI CGATCG 1 cut(s) 1425
RsaI GTAC 2 cut(s) 1054, 1262
RsaNI GTAC 2 cut(s) 1053, 1261
RseI CAYNNNNRTG 2 cut(s) 255, 1403
SacI GAGCTC 2 cut(s) 1108, 1575
SaqAI TTAA 8 cut(s) 288, 552, 611, 695, 722, 866, 1034, 1509
SatI GCNGC 1 cut(s) 1640
Sau3AI GATC 7 cut(s) 283, 526, 619, 820, 931, 1339, 1422
Sau96I GGNCC 1 cut(s) 1226
SchI GAGTC 3 cut(s) 779, 1058, 1395
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 1108, 1575
SfaNI GCATC 4 cut(s) 181, 247, 322, 992
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 1 cut(s) 1226
SmiMI CAYNNNNRTG 2 cut(s) 255, 1403
SmlI CTYRAG 2 cut(s) 59, 958
SmoI CTYRAG 2 cut(s) 59, 958
SpeI ACTAGT 1 cut(s) 515
SphI GCATGC 1 cut(s) 548
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 2 cut(s) 1224, 1327
SspI AATATT 2 cut(s) 51, 720
SspMI CTAG 2 cut(s) 516, 1487
SstI GAGCTC 2 cut(s) 1108, 1575
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 2 cut(s) 1047, 1099
TaaI ACNGT 3 cut(s) 212, 401, 1167
TaiI ACGT 4 cut(s) 678, 952, 982, 1060
TaqI TCGA 6 cut(s) 268, 305, 442, 489, 915, 1425
TfiI GAWTC 1 cut(s) 1438
Tru1I TTAA 8 cut(s) 288, 552, 611, 695, 722, 866, 1034, 1509
Tru9I TTAA 8 cut(s) 288, 552, 611, 695, 722, 866, 1034, 1509
TscAI CASTG 3 cut(s) 400, 802, 1449
TseFI GTSAC 3 cut(s) 395, 646, 809
TseI GCWGC 1 cut(s) 1639
Tsp45I GTSAC 3 cut(s) 395, 646, 809
TspDTI ATGAA 5 cut(s) 338, 780, 953, 1139, 1661
TspRI CASTG 3 cut(s) 400, 802, 1449
VpaK11BI GGWCC 1 cut(s) 1226
XapI RAATTY 4 cut(s) 689, 701, 1027, 1649
XceI RCATGY 2 cut(s) 548, 1557
XspI CTAG 2 cut(s) 516, 1487
ZraI GACGTC 1 cut(s) 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.