Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016809

Physical Location & Seq

Genomic Coordinates Forward (+)

33310806 .. 33313035

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTCAGCTTCAGCCCCACAGAGACCTCAAACCAGACCACCACCACCACCAACCCTCTCAAGCACCTCTTCGACACTATCTTCTCCTACGACGGCAATGTCATGCTCGCTGCCTTGGTCTCCCTCCTCCTCGTCATTCTCTTCGTCCTCCTCCTTCACGTCTACGCCAAATGGTTCTTATCCCAAGCTCACCACCGCCGCCGCGGCTCCATGGCCGTCTCCCGCCGCGTCCTCGGCCCCAACCGCTTCCAGCATTTCCACACCTTCACCTTCGACCCAACTACCAACAACCTCACCACCAATGCTCCCAAGGGTCTCGACACCTCCACGATCGCCACCATTCCTCTGTTTGTGTACAAATCTGAAGAGCAGTGTTTTCTCGAGTGTGTTATTTGTCTGAGCCCATTTGAGGACGAAGAAGTCGGCCGGAGGTTGTCCAAATGCGGTCACTGCTTTCACGTAGAGTGCATCGATATGTGGCTACATTCGCATACGAGCTGCCCGATTTGCCGAGCTCCGGTAGTCACACCGTCACAGTCTGATCAGCCCAAAACCGATCAGGTGGGTGAGGAATCTGTACCGGAAGGGGCAGTAGTTATTGAAGTTTCGGATTCGGGGTATGTTGAGAACCATCATGATGTTGTTGAAGAAACTAGTGCTGATTCTTTAAGGGATGAATCTTCGTCTTCGCCATTGATGGTGGGTTGTTCGTTGAAGAGAATGCTGAGCAGGAATAGACGAGAAAGCAAGTTGTTCCCATCTACAAATGGGACTGATGCGAGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

263

Amino Acids

29.27

Weight (kDa)

5.81

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	128 - 171	8.3e-13	Ring finger domain
zf-RING_11	PF17123	128 - 157	1.2e-08	RING-like zinc finger
zf-rbx1	PF12678	128 - 171	7.9e-08	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	128 - 170	2.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016809)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39090
malus_domestica	MD03G1064500.v1.1 MD11G1068600.v1.1
prunus_persica	Prupe.6G053700_v2.0.a1
pyrus_communis	pycom03g05180
rosa_chinensis	RchiOBHm_Chr5g0070411
rosa_laevigata	RLG00000036131
rosa_multiflora	Rmu_sc0007961.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010790
rosa_rugosa	Rorug05G0405800
rosa_samantha	Rh5BG479500 Rh5CG503700 Rh5DG491500
rosa_wichuraiana	Rw5G042990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	98, 419
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	2 cut(s)	204, 228
AciI	CCGC	8 cut(s)	196, 199, 202, 204, 223, 226, 244, 444
AcoI	YGGCCR	2 cut(s)	213, 424
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	356, 579
AfiI	CCNNNNNNNGG	2 cut(s)	409, 517
AgsI	TTSAA	3 cut(s)	602, 647, 715
AhlI	ACTAGT	1 cut(s)	653
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	4 cut(s)	9, 188, 498, 515
AluI	AGCT	4 cut(s)	9, 188, 498, 515
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	4 cut(s)	17, 124, 223, 320
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	213, 235, 424
ApeKI	GCWGC	2 cut(s)	110, 498
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	4 cut(s)	182, 259, 286, 578
AvaI	CYCGRG	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	404, 517
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	2 cut(s)	97, 485
BccI	CCATC	3 cut(s)	639, 691, 766
BceAI	ACGGC	2 cut(s)	109, 200
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	4 cut(s)	17, 124, 223, 320
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	1 cut(s)	654
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	6 cut(s)	111, 199, 202, 205, 226, 499
BlpI	GCTNAGC	1 cut(s)	725
BlsI	GCNGC	6 cut(s)	112, 200, 203, 206, 227, 500
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	208, 238
BmsI	GCATC	2 cut(s)	477, 766
BpiI	GAAGAC	1 cut(s)	678
Bpu1102I	GCTNAGC	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	460
BsaI	GGTCTC	3 cut(s)	17, 124, 320
BsaJI	CCNNGG	5 cut(s)	114, 202, 210, 232, 309
BsaWI	WCCGGW	2 cut(s)	517, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 517
Bse3DI	GCAATG	1 cut(s)	103
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	5 cut(s)	114, 202, 210, 232, 309
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	2 cut(s)	409, 517
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	389, 716
BseRI	GAGGAG	3 cut(s)	116, 119, 140
BseX3I	CGGCCG	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	97, 485
Bsh1236I	CGCG	2 cut(s)	204, 228
Bsh1285I	CGRYCG	2 cut(s)	333, 427
BshFI	GGCC	3 cut(s)	215, 237, 426
BshVI	ATCGAT	1 cut(s)	471
BsiEI	CGRYCG	2 cut(s)	333, 427
BsiHKAI	GWGCWC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	3 cut(s)	427, 518, 581
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	2 cut(s)	409, 517
BsmAI	GTCTC	4 cut(s)	17, 124, 223, 320
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	726
BsnI	GGCC	3 cut(s)	215, 237, 426
Bso31I	GGTCTC	3 cut(s)	17, 124, 320
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	404, 517
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	330, 541, 556
Bsp1720I	GCTNAGC	1 cut(s)	725
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	8 cut(s)	196, 199, 202, 204, 223, 226, 244, 444
BspANI	GGCC	3 cut(s)	215, 237, 426
BspCNI	CTCAG	2 cut(s)	390, 717
BspDI	ATCGAT	1 cut(s)	471
BspFNI	CGCG	2 cut(s)	204, 228
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	208, 238
BspQI	GCTCTTC	1 cut(s)	360
BspTNI	GGTCTC	3 cut(s)	17, 124, 320
BsrDI	GCAATG	1 cut(s)	103
BsrGI	TGTACA	1 cut(s)	354
BssECI	CCNNGG	5 cut(s)	114, 202, 210, 232, 309
BssMI	GATC	3 cut(s)	330, 541, 556
BssT1I	CCWWGG	3 cut(s)	114, 210, 309
Bst4CI	ACNGT	2 cut(s)	531, 537
Bst6I	CTCTTC	4 cut(s)	74, 146, 360, 710
BstAUI	TGTACA	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	108, 781
BstDEI	CTNAG	2 cut(s)	398, 725
BstDSI	CCRYGG	2 cut(s)	202, 210
BstF5I	GGATG	1 cut(s)	679
BstFNI	CGCG	2 cut(s)	204, 228
BstKTI	GATC	3 cut(s)	333, 544, 559
BstMAI	GTCTC	4 cut(s)	17, 124, 223, 320
BstMBI	GATC	3 cut(s)	330, 541, 556
BstMCI	CGRYCG	2 cut(s)	333, 427
BstMWI	GCNNNNNNNGC	6 cut(s)	204, 234, 243, 450, 487, 507
BstUI	CGCG	2 cut(s)	204, 228
BstV1I	GCAGC	2 cut(s)	97, 485
BstV2I	GAAGAC	1 cut(s)	678
BstZI	CGGCCG	1 cut(s)	424
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	215, 237, 426
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	2 cut(s)	202, 210
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	2 cut(s)	377, 448
BtsIMutI	CAGTG	2 cut(s)	377, 448
Cac8I	GCNNGC	2 cut(s)	108, 781
CciI	TCATGA	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	236
Cfr42I	CCGCGG	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	471
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	355, 578
CviAII	CATG	3 cut(s)	103, 211, 635
CviQI	GTAC	2 cut(s)	355, 578
DdeI	CTNAG	2 cut(s)	398, 725
DpnI	GATC	3 cut(s)	332, 543, 558
DpnII	GATC	3 cut(s)	330, 541, 556
DrdI	GACNNNNNNGTC	2 cut(s)	98, 419
DseDI	GACNNNNNNGTC	2 cut(s)	98, 419
EaeI	YGGCCR	2 cut(s)	213, 424
EagI	CGGCCG	1 cut(s)	424
Eam1104I	CTCTTC	4 cut(s)	74, 146, 360, 710
EarI	CTCTTC	4 cut(s)	74, 146, 360, 710
Ecl136II	GAGCTC	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	424
Eco130I	CCWWGG	3 cut(s)	114, 210, 309
Eco24I	GRGCYC	2 cut(s)	404, 517
Eco31I	GGTCTC	3 cut(s)	17, 124, 320
Eco52I	CGGCCG	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	515
EcoT14I	CCWWGG	3 cut(s)	114, 210, 309
EcoT38I	GRGCYC	2 cut(s)	404, 517
ErhI	CCWWGG	3 cut(s)	114, 210, 309
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	3 cut(s)	106, 214, 638
FaiI	YATR	6 cut(s)	104, 212, 476, 492, 621, 636
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	3 cut(s)	102, 210, 634
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	541
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	6 cut(s)	111, 199, 202, 205, 226, 499
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	2 cut(s)	404, 517
Fsp4HI	GCNGC	6 cut(s)	111, 199, 202, 205, 226, 499
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	6 cut(s)	111, 199, 202, 205, 226, 499
HaeIII	GGCC	3 cut(s)	215, 237, 426
HapII	CCGG	3 cut(s)	427, 518, 581
HgaI	GACGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	106, 214, 638
HinfI	GANTC	4 cut(s)	572, 611, 662, 677
HpaII	CCGG	3 cut(s)	427, 518, 581
HphI	GGTGA	4 cut(s)	182, 259, 286, 578
Hpy166II	GTNNAC	2 cut(s)	163, 355
Hpy188I	TCNGA	4 cut(s)	364, 399, 541, 610
Hpy188III	TCNNGA	3 cut(s)	317, 380, 635
Hpy8I	GTNNAC	2 cut(s)	163, 355
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	164, 274, 280, 578
HpyCH4III	ACNGT	2 cut(s)	531, 537
HpyCH4IV	ACGT	2 cut(s)	159, 459
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	6 cut(s)	204, 234, 243, 450, 487, 507
HpyF3I	CTNAG	2 cut(s)	398, 725
HpySE526I	ACGT	2 cut(s)	159, 459
Hsp92II	CATG	3 cut(s)	106, 214, 638
Ksp22I	TGATCA	1 cut(s)	541
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	330, 541, 556
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	3 cut(s)	212, 310, 520
LpnPI	CCDG	7 cut(s)	47, 263, 440, 531, 545, 594, 715
Lsp1109I	GCAGC	2 cut(s)	97, 485
LweI	GCATC	2 cut(s)	477, 766
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	159, 459
MaeIII	GTNAC	3 cut(s)	446, 523, 531
MalI	GATC	3 cut(s)	332, 543, 558
MboI	GATC	3 cut(s)	330, 541, 556
MboII	GAAGA	9 cut(s)	61, 73, 133, 377, 428, 659, 672, 678, 727
MhlI	GDGCHC	2 cut(s)	404, 517
MseI	TTAA	1 cut(s)	668
MslI	CAYNNNNRTG	2 cut(s)	473, 636
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	3 cut(s)	427, 518, 581
Mva1269I	GAATGC	1 cut(s)	726
MvnI	CGCG	2 cut(s)	204, 228
MwoI	GCNNNNNNNGC	6 cut(s)	204, 234, 243, 450, 487, 507
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	3 cut(s)	330, 541, 556
NlaIII	CATG	3 cut(s)	106, 214, 638
NlaIV	GGNNCC	2 cut(s)	208, 238
NmeAIII	GCCGAG	2 cut(s)	213, 536
NmuCI	GTSAC	3 cut(s)	446, 523, 531
PaeR7I	CTCGAG	1 cut(s)	380
PagI	TCATGA	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PctI	GAATGC	1 cut(s)	726
PfeI	GAWTC	4 cut(s)	572, 611, 662, 677
PkrI	GCNGC	6 cut(s)	112, 200, 203, 206, 227, 500
Ple19I	CGATCG	1 cut(s)	333
Ppu21I	YACGTR	1 cut(s)	460
Psp124BI	GAGCTC	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	208, 238
PspPI	GGNCC	1 cut(s)	236
PvuI	CGATCG	1 cut(s)	333
RsaI	GTAC	2 cut(s)	356, 579
RsaNI	GTAC	2 cut(s)	355, 578
RseI	CAYNNNNRTG	2 cut(s)	473, 636
SacI	GAGCTC	1 cut(s)	517
SacII	CCGCGG	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	6 cut(s)	111, 199, 202, 205, 226, 499
Sau3AI	GATC	3 cut(s)	330, 541, 556
Sau96I	GGNCC	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	404, 517
SfaNI	GCATC	2 cut(s)	477, 766
Sfr274I	CTCGAG	1 cut(s)	380
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	2 cut(s)	473, 636
SmlI	CTYRAG	2 cut(s)	59, 380
SmoI	CTYRAG	2 cut(s)	59, 380
SpeI	ACTAGT	1 cut(s)	653
SsiI	CCGC	8 cut(s)	196, 199, 202, 204, 223, 226, 244, 444
SspMI	CTAG	1 cut(s)	654
SstI	GAGCTC	1 cut(s)	517
StyI	CCWWGG	3 cut(s)	114, 210, 309
TaaI	ACNGT	2 cut(s)	531, 537
TaiI	ACGT	2 cut(s)	162, 462
TaqI	TCGA	5 cut(s)	72, 273, 318, 381, 471
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	4 cut(s)	201, 204, 207, 228
TfiI	GAWTC	4 cut(s)	572, 611, 662, 677
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	2 cut(s)	377, 455
TseFI	GTSAC	3 cut(s)	446, 523, 531
TseI	GCWGC	2 cut(s)	110, 498
Tsp45I	GTSAC	3 cut(s)	446, 523, 531
TspDTI	ATGAA	1 cut(s)	690
TspRI	CASTG	2 cut(s)	377, 455
XhoI	CTCGAG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.