Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016809

Physical Location & Seq

Genomic Coordinates Reverse (-)

13753143 .. 13753940

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTCAGCTTCAACCCCACAGAGACCCCAAACCAAACCACCACCACCACCACCAACCCTCTCAAGCACCTCTTTGACACCATCTTCTCCTACAACGGCAATGTCATGCTCGCTGCCTTGGTCTCCCTCCTCCTCGTCATTCTCTTCGTCCTCCTCCTCCACGTCTACGCCAAATGGTTCTTAGCTCAAGCCCACCACCGCCGCCGCGGCTCCATGGCAGTCTCCCGCCGCGTCCTCGGCCCCAACCGCTTCCAGCATTTCCACACCTTCACCTTCGACCCGACTACCAACAATCTCACCACCAATACTCCCAAGGGTCTTGACTCCTCCACAATCGCCACCATTCCTTTGTTTGTGTACAAATCTGAAGAGGAGCATTTTCACCAGCACCTTGAGTGTGTTATTTGTCTGAGCCCTTTTGAGGACGACGACGTCGGCCGGAGCTTGCCCAAATGCGGCCACTGCTTTCACGTTGAGTGCATCGATATGTGGTTGCATTCGCACATGAGCTGCCCGATTTGTCGAGCTCCGGTAGTCGCACCGGCACAGTCTGATCAGGTCAAACCTGAGGTGGTGGGTGAGGAATCTGCTGCGGAAGCAGTAGTTATTGAAGTTTCGGATTCTGGGTATGTTGAGAATCATCATGATGATGTTGAAGAAACTAGTGCTGATTCCTTATCGGATGAATCTTCGTCTTCGCCATTGATGGTGGGTTGTTCGTTGAAGAGAATGCTGAGCAGGAATAGACCAGAAAGCAAGGTGTTCCCATCTACAAATGGGAATGATGTGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

265

Amino Acids

29.53

Weight (kDa)

5.61

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	132 - 175	4.4e-13	Ring finger domain
zf-RING_11	PF17123	132 - 161	6.7e-09	RING-like zinc finger
zf-rbx1	PF12678	132 - 175	8.3e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	132 - 174	9.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016809)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39090
malus_domestica	MD03G1064500.v1.1 MD11G1068600.v1.1
prunus_persica	Prupe.6G053700_v2.0.a1
pyrus_communis	pycom03g05180
rosa_chinensis	RchiOBHm_Chr5g0070411
rosa_laevigata	RLG00000036131
rosa_multiflora	Rmu_sc0007961.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010790
rosa_rugosa	Rorug05G0405800
rosa_samantha	Rh5BG479500 Rh5CG503700 Rh5DG491500
rosa_wichuraiana	Rw5G042990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
AatII	GACGTC	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	2 cut(s)	207, 231
AciI	CCGC	9 cut(s)	199, 202, 205, 207, 226, 229, 247, 456, 593
AcoI	YGGCCR	2 cut(s)	436, 457
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	421, 455
AgsI	TTSAA	4 cut(s)	13, 611, 656, 724
AhlI	ACTAGT	1 cut(s)	662
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	5 cut(s)	9, 185, 444, 510, 527
AluI	AGCT	5 cut(s)	9, 185, 444, 510, 527
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	3 cut(s)	17, 127, 226
AoxI	GGCC	3 cut(s)	238, 436, 457
ApeKI	GCWGC	3 cut(s)	113, 510, 590
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	4 cut(s)	262, 289, 374, 590
AxyI	CCTNAGG	1 cut(s)	567
BanII	GRGCYC	2 cut(s)	416, 529
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	3 cut(s)	100, 497, 577
BccI	CCATC	3 cut(s)	89, 700, 775
BceAI	ACGGC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	17, 127, 226
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	1 cut(s)	663
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
BlpI	GCTNAGC	1 cut(s)	734
BlsI	GCNGC	8 cut(s)	115, 203, 206, 209, 230, 458, 512, 592
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	211, 241
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	3 cut(s)	47, 171, 413
Bsa29I	ATCGAT	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	432
BsaI	GGTCTC	2 cut(s)	17, 127
BsaJI	CCNNGG	5 cut(s)	117, 205, 213, 235, 312
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 455
Bse118I	RCCGGY	1 cut(s)	541
Bse21I	CCTNAGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	5 cut(s)	117, 205, 213, 235, 312
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	2 cut(s)	421, 455
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	401, 558, 725
BseRI	GAGGAG	6 cut(s)	119, 122, 143, 146, 316, 386
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	100, 497, 577
Bsh1236I	CGCG	2 cut(s)	207, 231
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	3 cut(s)	240, 438, 459
BshVI	ATCGAT	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	3 cut(s)	439, 530, 542
BslI	CCNNNNNNNGG	2 cut(s)	421, 455
BsmAI	GTCTC	3 cut(s)	17, 127, 226
BsmI	GAATGC	2 cut(s)	496, 735
BsnI	GGCC	3 cut(s)	240, 438, 459
Bso31I	GGTCTC	2 cut(s)	17, 127
Bsp1286I	GDGCHC	2 cut(s)	416, 529
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	553
Bsp1720I	GCTNAGC	1 cut(s)	734
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	9 cut(s)	199, 202, 205, 207, 226, 229, 247, 456, 593
BspANI	GGCC	3 cut(s)	240, 438, 459
BspCNI	CTCAG	3 cut(s)	402, 559, 726
BspDI	ATCGAT	1 cut(s)	483
BspFNI	CGCG	2 cut(s)	207, 231
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	211, 241
BspTNI	GGTCTC	2 cut(s)	17, 127
BsrDI	GCAATG	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	541
BsrGI	TGTACA	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	5 cut(s)	117, 205, 213, 235, 312
BssMI	GATC	1 cut(s)	553
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	3 cut(s)	117, 213, 312
Bst4CI	ACNGT	1 cut(s)	549
Bst6I	CTCTTC	3 cut(s)	149, 363, 719
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	111, 446
BstDEI	CTNAG	4 cut(s)	181, 410, 567, 734
BstDSI	CCRYGG	2 cut(s)	205, 213
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	2 cut(s)	207, 231
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	3 cut(s)	17, 127, 226
BstMBI	GATC	1 cut(s)	553
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 237, 246, 462, 596
BstUI	CGCG	2 cut(s)	207, 231
BstV1I	GCAGC	3 cut(s)	100, 497, 577
BstV2I	GAAGAC	1 cut(s)	687
BstZI	CGGCCG	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	567
BsuRI	GGCC	3 cut(s)	240, 438, 459
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	205, 213
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	688
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	111, 446
CciI	TCATGA	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	239
Cfr42I	CCGCGG	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	4 cut(s)	106, 214, 505, 644
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	4 cut(s)	181, 410, 567, 734
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	2 cut(s)	436, 457
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	3 cut(s)	149, 363, 719
EarI	CTCTTC	3 cut(s)	149, 363, 719
Ecl136II	GAGCTC	1 cut(s)	527
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	3 cut(s)	117, 213, 312
Eco24I	GRGCYC	2 cut(s)	416, 529
Eco31I	GGTCTC	2 cut(s)	17, 127
Eco52I	CGGCCG	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	527
EcoT14I	CCWWGG	3 cut(s)	117, 213, 312
EcoT38I	GRGCYC	2 cut(s)	416, 529
ErhI	CCWWGG	3 cut(s)	117, 213, 312
FaeI	CATG	4 cut(s)	109, 217, 508, 647
FaiI	YATR	6 cut(s)	107, 215, 488, 506, 630, 645
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	4 cut(s)	105, 213, 504, 643
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
FokI	GGATG	1 cut(s)	695
FriOI	GRGCYC	2 cut(s)	416, 529
Fsp4HI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
HaeIII	GGCC	3 cut(s)	240, 438, 459
HapII	CCGG	3 cut(s)	439, 530, 542
HgaI	GACGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	109, 217, 508, 647
HinfI	GANTC	6 cut(s)	323, 584, 620, 637, 671, 686
HpaII	CCGG	3 cut(s)	439, 530, 542
HphI	GGTGA	4 cut(s)	262, 289, 374, 590
Hpy166II	GTNNAC	2 cut(s)	166, 358
Hpy188I	TCNGA	5 cut(s)	367, 411, 553, 619, 682
Hpy188III	TCNNGA	2 cut(s)	320, 644
Hpy8I	GTNNAC	2 cut(s)	166, 358
Hpy99I	CGWCG	3 cut(s)	431, 434, 437
HpyAV	CCTTC	2 cut(s)	277, 283
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4IV	ACGT	3 cut(s)	162, 432, 471
HpyCH4V	TGCA	2 cut(s)	480, 496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 237, 246, 462, 596
HpyF3I	CTNAG	4 cut(s)	181, 410, 567, 734
HpySE526I	ACGT	3 cut(s)	162, 432, 471
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	4 cut(s)	109, 217, 508, 647
Ksp22I	TGATCA	1 cut(s)	553
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	4 cut(s)	215, 373, 441, 532
Lsp1109I	GCAGC	3 cut(s)	100, 497, 577
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	3 cut(s)	162, 432, 471
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MboII	GAAGA	7 cut(s)	76, 136, 380, 668, 681, 687, 736
MhlI	GDGCHC	2 cut(s)	416, 529
MlyI	GAGTC	1 cut(s)	317
MslI	CAYNNNNRTG	3 cut(s)	485, 645, 648
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	3 cut(s)	439, 530, 542
Mva1269I	GAATGC	2 cut(s)	496, 735
MvnI	CGCG	2 cut(s)	207, 231
MwoI	GCNNNNNNNGC	5 cut(s)	207, 237, 246, 462, 596
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	553
NlaIII	CATG	4 cut(s)	109, 217, 508, 647
NlaIV	GGNNCC	2 cut(s)	211, 241
NmeAIII	GCCGAG	1 cut(s)	216
PagI	TCATGA	1 cut(s)	643
PctI	GAATGC	2 cut(s)	496, 735
PfeI	GAWTC	5 cut(s)	584, 620, 637, 671, 686
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	8 cut(s)	115, 203, 206, 209, 230, 458, 512, 592
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	211, 241
PspPI	GGNCC	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	3 cut(s)	485, 645, 648
SacI	GAGCTC	1 cut(s)	529
SacII	CCGCGG	1 cut(s)	208
SatI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	416, 529
SfaNI	GCATC	1 cut(s)	489
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SmiMI	CAYNNNNRTG	3 cut(s)	485, 645, 648
SmlI	CTYRAG	3 cut(s)	62, 186, 392
SmoI	CTYRAG	3 cut(s)	62, 186, 392
SpeI	ACTAGT	1 cut(s)	662
SsiI	CCGC	9 cut(s)	199, 202, 205, 207, 226, 229, 247, 456, 593
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	1 cut(s)	529
StyI	CCWWGG	3 cut(s)	117, 213, 312
TaaI	ACNGT	1 cut(s)	549
TaiI	ACGT	3 cut(s)	165, 435, 474
TaqI	TCGA	3 cut(s)	276, 483, 523
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	5 cut(s)	204, 207, 210, 231, 459
TfiI	GAWTC	5 cut(s)	584, 620, 637, 671, 686
TscAI	CASTG	1 cut(s)	467
TseI	GCWGC	3 cut(s)	113, 510, 590
TspDTI	ATGAA	1 cut(s)	699
TspRI	CASTG	1 cut(s)	467
Tth111I	GACNNNGTC	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	663
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.