Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016809

Physical Location & Seq

Genomic Coordinates Reverse (-)

5901574 .. 5902314

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1068600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCTCGCCGCCTTGGTCTCTCTTCTTCTCGTCATTCTCTTCGTCCTCATCCTCCACATCTACGCCAAGTGGCTCTTAGCTCAAGCCCACCACCGCCGCCGGGGAAGCTCTGTCACCGTCTCTCAGGTCCTCGGTCCCAACCGCTTCCAGAACTTCCACACCTTCACATTGGACACAAACTCGGCCAACATTAACAATATTTCGGGCTCTGGTTCATCCAAGGGCCTCGACTCGAAAACCATCTCCGCCATTCCTTTGTTCGTGTACAAAACAGGGGAGTTGCCGGAGATGGCGGAGGAGGAGAGTTGTAAAAATGGGGTTTTGGAGATGGAGTGTGTGATTTGTCTGAGTCTGTTCGAGGACAACGACGTGGGGAGGAGTTTGCCAAAATGCGGTCACTGTTTTCATGTCGAGTGTATTGATATGTGGCTGGGTTCTCACAAGAACTGTCCAATTTGCAGAGCTCCGACGGTGGTTGAAACGACGTCAGATCGGGTTGCGGGCGAAGAGGAATCGGTTATCATTGATGTTTTGGATTCTGGGTATGTTTCAAATCGCGGTCTTGTTAATGTTGGAGTGATGGGTACTGATTCCGAATCGACATCTTCGTCTTCTCCTTCGTCTTCATCGTCATCGCCATTAATGGTGGGGTGTTCACTGAAGAGAATGCTGAGCAGAAATAGGCCGGAAACTAGCAAGGTTTTCCCAACCACTAATGGGCTTGACCAAGCAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

247

Amino Acids

26.59

Weight (kDa)

5.63

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	108 - 154	3e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	111 - 154	5.1e-13	Ring finger domain
zf-RING_11	PF17123	111 - 140	3.7e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	111 - 153	8.9e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016809)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39090
malus_domestica	MD03G1064500.v1.1 MD11G1068600.v1.1
prunus_persica	Prupe.6G053700_v2.0.a1
pyrus_communis	pycom03g05180
rosa_chinensis	RchiOBHm_Chr5g0070411
rosa_laevigata	RLG00000036131
rosa_multiflora	Rmu_sc0007961.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010790
rosa_rugosa	Rorug05G0405800
rosa_samantha	Rh5BG479500 Rh5CG503700 Rh5DG491500
rosa_wichuraiana	Rw5G042990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	607
AatII	GACGTC	1 cut(s)	488
AccII	CGCG	1 cut(s)	558
AciI	CCGC	9 cut(s)	9, 94, 97, 142, 246, 293, 393, 500, 558
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	2 cut(s)	266, 586
AfiI	CCNNNNNNNGG	3 cut(s)	100, 392, 717
AgsI	TTSAA	2 cut(s)	479, 552
AjiI	CACGTC	1 cut(s)	370
AluBI	AGCT	3 cut(s)	80, 108, 464
AluI	AGCT	3 cut(s)	80, 108, 464
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	22, 124
AoxI	GGCC	3 cut(s)	183, 223, 683
AseI	ATTAAT	1 cut(s)	641
AspS9I	GGNCC	3 cut(s)	127, 134, 223
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	127, 134
BanII	GRGCYC	2 cut(s)	209, 466
BbsI	GAAGAC	2 cut(s)	603, 615
Bbv12I	GWGCWC	1 cut(s)	466
BccI	CCATC	4 cut(s)	248, 283, 322, 574
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	22, 124
BfaI	CTAG	1 cut(s)	693
BisI	GCNGC	2 cut(s)	9, 97
BlpI	GCTNAGC	1 cut(s)	671
BlsI	GCNGC	2 cut(s)	10, 98
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	2 cut(s)	127, 134
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	127, 134, 223
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	724
BpiI	GAAGAC	2 cut(s)	603, 615
Bpu1102I	GCTNAGC	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	4 cut(s)	12, 100, 130, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 392, 717
BseDI	CCNNGG	4 cut(s)	12, 100, 130, 219
BseGI	GGATG	2 cut(s)	48, 215
BseLI	CCNNNNNNNGG	3 cut(s)	100, 392, 717
BseMII	CTCAG	3 cut(s)	137, 338, 662
BseRI	GAGGAG	3 cut(s)	311, 314, 391
BseYI	CCCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	185, 225, 685
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	3 cut(s)	100, 284, 686
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	100, 392, 717
BsmAI	GTCTC	2 cut(s)	22, 124
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	3 cut(s)	185, 225, 685
Bso31I	GGTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	209, 466
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	490
Bsp1720I	GCTNAGC	1 cut(s)	671
BspACI	CCGC	9 cut(s)	9, 94, 97, 142, 246, 293, 393, 500, 558
BspANI	GGCC	3 cut(s)	185, 225, 685
BspCNI	CTCAG	3 cut(s)	136, 339, 663
BspFNI	CGCG	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	264
BssECI	CCNNGG	4 cut(s)	12, 100, 130, 219
BssMI	GATC	1 cut(s)	490
BssNI	GRCGYC	1 cut(s)	485
BssT1I	CCWWGG	2 cut(s)	12, 219
Bst4CI	ACNGT	4 cut(s)	118, 401, 449, 472
Bst6I	CTCTTC	4 cut(s)	27, 44, 501, 656
BstACI	GRCGYC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	6, 502
BstDEI	CTNAG	4 cut(s)	76, 123, 347, 671
BstF5I	GGATG	2 cut(s)	48, 215
BstFNI	CGCG	1 cut(s)	558
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	2 cut(s)	22, 124
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	558
BstV2I	GAAGAC	2 cut(s)	603, 615
BsuRI	GGCC	3 cut(s)	185, 225, 685
BtgZI	GCGATG	1 cut(s)	618
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	48, 215
BtsIMutI	CAGTG	2 cut(s)	397, 656
Cac8I	GCNNGC	2 cut(s)	6, 502
Cfr13I	GGNCC	3 cut(s)	127, 134, 223
Csp6I	GTAC	2 cut(s)	265, 585
CviAII	CATG	1 cut(s)	407
CviQI	GTAC	2 cut(s)	265, 585
DdeI	CTNAG	4 cut(s)	76, 123, 347, 671
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
DrdI	GACNNNNNNGTC	1 cut(s)	607
DseDI	GACNNNNNNGTC	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	4 cut(s)	27, 44, 501, 656
EarI	CTCTTC	4 cut(s)	27, 44, 501, 656
EciI	GGCGGA	2 cut(s)	235, 308
Ecl136II	GAGCTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	12, 219
Eco24I	GRGCYC	2 cut(s)	209, 466
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	127, 134
Eco53kI	GAGCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	464
EcoO109I	RGGNCCY	2 cut(s)	127, 223
EcoT14I	CCWWGG	2 cut(s)	12, 219
EcoT38I	GRGCYC	2 cut(s)	209, 466
ErhI	CCWWGG	2 cut(s)	12, 219
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	1 cut(s)	410
FaiI	YATR	3 cut(s)	408, 425, 546
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	406
FauI	CCCGC	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	9, 97
FokI	GGATG	2 cut(s)	35, 202
FriOI	GRGCYC	2 cut(s)	209, 466
Fsp4HI	GCNGC	2 cut(s)	9, 97
FspBI	CTAG	1 cut(s)	693
GluI	GCNGC	2 cut(s)	9, 97
GsaI	CCCAGC	1 cut(s)	434
HaeIII	GGCC	3 cut(s)	185, 225, 685
HapII	CCGG	3 cut(s)	100, 284, 686
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	410
HinfI	GANTC	6 cut(s)	230, 349, 512, 536, 590, 596
HpaII	CCGG	3 cut(s)	100, 284, 686
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	265, 656
Hpy188I	TCNGA	4 cut(s)	348, 468, 490, 595
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	265, 656
Hpy99I	CGWCG	3 cut(s)	371, 472, 487
HpyAV	CCTTC	2 cut(s)	172, 627
HpyCH4III	ACNGT	4 cut(s)	118, 401, 449, 472
HpyCH4IV	ACGT	2 cut(s)	369, 485
HpyCH4V	TGCA	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	4 cut(s)	76, 123, 347, 671
HpySE526I	ACGT	2 cut(s)	369, 485
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	1 cut(s)	410
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	9 cut(s)	110, 113, 161, 195, 258, 297, 416, 525, 699
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	2 cut(s)	369, 485
MaeIII	GTNAC	2 cut(s)	112, 395
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	8 cut(s)	14, 17, 31, 518, 597, 603, 615, 673
MhlI	GDGCHC	2 cut(s)	209, 466
MluCI	AATT	1 cut(s)	453
MlyI	GAGTC	2 cut(s)	224, 358
MmeI	TCCRAC	2 cut(s)	491, 553
MnlI	CCTC	9 cut(s)	56, 62, 140, 236, 289, 292, 352, 369, 502
MseI	TTAA	3 cut(s)	192, 567, 641
MspI	CCGG	3 cut(s)	100, 284, 686
MspR9I	CCNGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	672
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	2 cut(s)	112, 395
PcsI	WCGNNNNNNNCGW	3 cut(s)	363, 605, 626
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	4 cut(s)	512, 536, 590, 596
PkrI	GCNGC	2 cut(s)	10, 98
PleI	GAGTC	2 cut(s)	224, 357
PpsI	GAGTC	2 cut(s)	224, 357
PpuMI	RGGWCCY	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	641
Psp124BI	GAGCTC	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	3 cut(s)	127, 134, 223
PspPPI	RGGWCCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	266, 586
RsaNI	GTAC	2 cut(s)	265, 585
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	3 cut(s)	192, 567, 641
SatI	GCNGC	2 cut(s)	9, 97
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	3 cut(s)	127, 134, 223
SchI	GAGTC	2 cut(s)	224, 358
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	209, 466
SetI	ASST	8 cut(s)	82, 110, 129, 164, 372, 466, 488, 702
SfaNI	GCATC	1 cut(s)	724
SinI	GGWCC	2 cut(s)	127, 134
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	453
SsiI	CCGC	9 cut(s)	9, 94, 97, 142, 246, 293, 393, 500, 558
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	693
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	2 cut(s)	12, 219
TaaI	ACNGT	4 cut(s)	118, 401, 449, 472
TaiI	ACGT	2 cut(s)	372, 488
TaqI	TCGA	5 cut(s)	228, 233, 357, 411, 599
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	453
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	11, 99
TfiI	GAWTC	4 cut(s)	512, 536, 590, 596
Tru1I	TTAA	3 cut(s)	192, 567, 641
Tru9I	TTAA	3 cut(s)	192, 567, 641
TscAI	CASTG	2 cut(s)	404, 663
TseFI	GTSAC	2 cut(s)	112, 395
Tsp45I	GTSAC	2 cut(s)	112, 395
TspDTI	ATGAA	3 cut(s)	204, 395, 615
TspRI	CASTG	2 cut(s)	404, 663
VpaK11BI	GGWCC	2 cut(s)	127, 134
VspI	ATTAAT	1 cut(s)	641
XspI	CTAG	1 cut(s)	693
ZraI	GACGTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.