Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016809

Physical Location & Seq

Genomic Coordinates Reverse (-)

3766499 .. 3767365

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G053700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTCAGTCCCACAGACACACAGCAGCAGCAGCAGCAGCCCAACAACCCACTCAAACAACTCTTTGCCACCATTTTCTCATACGACGGCAATGTCTTGCTTGCTGCCTTGGTCTCTCTTCTTCTCGTCATTCTCTTTGTCCTCCTCCTCCATGTCTACGCAAAATGGTTCTTGGCCCAAGCTCACCACAGGCGCCGCCGCAGCTCCATGACCGTCTCCCGGGTTCTCGGCCCTAACCGATTCCAGCATTTCCACACCTTCACCTTGGACCCAACGTCAACAAACATCAACAGCCTCTCTGGCTCTGCGTCGTCGAAAGGCCTCGACTTGAAAACAATTTCTGCAATTCCTCTGTTCGTGTACAAAACAGAGGAGGAGAAGGAGGAGGAGCGAAATTACGAAAATGGGTTTTTGGAGATGGAGTGTGTGATTTGTTTGAGCCCGTTTGAGGACAACGACGTGGGGAGGAATTTGCCCAAATGTGGTCACTGTTTTCATGTGGAGTGCATCGATATGTGGCTGGGTTCACACATGAACTGCCCAATTTGCAGAGCTCTGATAGTGACCAGCGCTGATGGGATTGGGATGGGGATTGATACGACGTCGGATCAGGCGGTGGGTGAAGAAGAATCGGTTGTAATTGATGTTTTGGATTCTGGGTATGTTGAAAATGATGATCTTGTTCGTGTTGGGGTGATGAGAACTGATTCTGAACCCACATCTTCTTCTTCTTCTTCATCCTCGTCCTCATCTCCATTAACGGTGGGTTGTTCATTGAAGAGAATGCTGAGCAGAAACAGGCCAGAAATCAGCAAGGTTTTCCCAACCACAAATGGGAATGATCACAGCAATCAAATGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

289

Amino Acids

31.96

Weight (kDa)

5.17

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016809)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39090
malus_domestica	MD03G1064500.v1.1 MD11G1068600.v1.1
prunus_persica	Prupe.6G053700_v2.0.a1
pyrus_communis	pycom03g05180
rosa_chinensis	RchiOBHm_Chr5g0070411
rosa_laevigata	RLG00000036131
rosa_multiflora	Rmu_sc0007961.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010790
rosa_rugosa	Rorug05G0405800
rosa_samantha	Rh5BG479500 Rh5CG503700 Rh5DG491500
rosa_wichuraiana	Rw5G042990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	196, 199, 614
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	469
AcyI	GRCGYC	2 cut(s)	193, 602
AfaI	GTAC	1 cut(s)	362
AfeI	AGCGCT	1 cut(s)	571
AfiI	CCNNNNNNNGG	4 cut(s)	219, 448, 482, 834
AgsI	TTSAA	3 cut(s)	331, 668, 778
AhdI	GACNNNNNGTC	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	460
AluBI	AGCT	3 cut(s)	182, 204, 554
AluI	AGCT	3 cut(s)	182, 204, 554
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	2 cut(s)	118, 220
AlwI	GGATC	1 cut(s)	615
Ama87I	CYCGRG	1 cut(s)	219
Aor51HI	AGCGCT	1 cut(s)	571
AoxI	GGCC	4 cut(s)	174, 229, 319, 800
ApeKI	GCWGC	7 cut(s)	25, 28, 31, 34, 37, 104, 201
ApoI	RAATTY	1 cut(s)	469
Asp700I	GAANNNNTTC	1 cut(s)	706
AspLEI	GCGC	2 cut(s)	195, 572
AspS9I	GGNCC	3 cut(s)	175, 230, 268
AsuC2I	CCSGG	2 cut(s)	220, 221
AsuHPI	GGTGA	4 cut(s)	176, 253, 632, 706
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	192
BanII	GRGCYC	2 cut(s)	443, 556
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	7 cut(s)	37, 40, 43, 46, 49, 91, 213
BccI	CCATC	3 cut(s)	412, 569, 580
BceAI	ACGGC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	2 cut(s)	220, 221
BcoDI	GTCTC	2 cut(s)	118, 220
BfoI	RGCGCY	2 cut(s)	196, 573
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	9 cut(s)	26, 29, 32, 35, 38, 105, 196, 199, 202
BlpI	GCTNAGC	1 cut(s)	788
BlsI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 106, 197, 200, 203
Bme1390I	CCNGG	2 cut(s)	220, 221
Bme18I	GGWCC	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	219
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	3 cut(s)	175, 230, 268
BmiI	GGNNCC	2 cut(s)	194, 270
BmrFI	CCNGG	2 cut(s)	220, 221
BmsI	GCATC	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	788
BpuMI	CCSGG	2 cut(s)	220, 221
Bsa29I	ATCGAT	1 cut(s)	510
BsaHI	GRCGYC	2 cut(s)	193, 602
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	108, 219, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	219, 448, 482, 834
Bse3DI	GCAATG	1 cut(s)	97
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	108, 219, 264
BseGI	GGATG	3 cut(s)	591, 737, 865
BseLI	CCNNNNNNNGG	4 cut(s)	219, 448, 482, 834
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	779
BseRI	GAGGAG	6 cut(s)	134, 137, 386, 389, 398, 401
BseXI	GCAGC	7 cut(s)	37, 40, 43, 46, 49, 91, 213
BseYI	CCCAGC	1 cut(s)	520
BshFI	GGCC	4 cut(s)	176, 231, 321, 802
BshNI	GGYRCC	1 cut(s)	192
BshVI	ATCGAT	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	4 cut(s)	219, 448, 482, 834
BsmAI	GTCTC	2 cut(s)	118, 220
BsmBI	CGTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	789
BsnI	GGCC	4 cut(s)	176, 231, 321, 802
Bso31I	GGTCTC	1 cut(s)	118
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	443, 556
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	607, 676, 841
Bsp1720I	GCTNAGC	1 cut(s)	788
BspACI	CCGC	3 cut(s)	196, 199, 614
BspANI	GGCC	4 cut(s)	176, 231, 321, 802
BspCNI	CTCAG	1 cut(s)	780
BspDI	ATCGAT	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	194, 270
BspPI	GGATC	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	360
BssECI	CCNNGG	3 cut(s)	108, 219, 264
BssMI	GATC	3 cut(s)	607, 676, 841
BssNI	GRCGYC	2 cut(s)	193, 602
BssT1I	CCWWGG	2 cut(s)	108, 264
Bst4CI	ACNGT	3 cut(s)	214, 491, 763
Bst6I	CTCTTC	2 cut(s)	123, 773
BstACI	GRCGYC	2 cut(s)	193, 602
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	788
BstF5I	GGATG	3 cut(s)	591, 737, 865
BstH2I	RGCGCY	2 cut(s)	196, 573
BstHHI	GCGC	2 cut(s)	195, 572
BstKTI	GATC	3 cut(s)	610, 679, 844
BstMAI	GTCTC	2 cut(s)	118, 220
BstMBI	GATC	3 cut(s)	607, 676, 841
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 34, 37, 201, 300, 546
BstSCI	CCNGG	2 cut(s)	218, 219
BstV1I	GCAGC	7 cut(s)	37, 40, 43, 46, 49, 91, 213
Bsu15I	ATCGAT	1 cut(s)	510
BsuRI	GGCC	4 cut(s)	176, 231, 321, 802
BsuTUI	ATCGAT	1 cut(s)	510
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	591, 737, 865
BtsIMutI	CAGTG	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	2 cut(s)	195, 572
Cfr13I	GGNCC	3 cut(s)	175, 230, 268
Cfr9I	CCCGGG	1 cut(s)	219
ClaI	ATCGAT	1 cut(s)	510
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	4 cut(s)	152, 208, 497, 532
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	788
DinI	GGCGCC	1 cut(s)	194
DpnI	GATC	3 cut(s)	609, 678, 843
DpnII	GATC	3 cut(s)	607, 676, 841
DrdI	GACNNNNNNGTC	1 cut(s)	92
DriI	GACNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	123, 773
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	2 cut(s)	123, 773
Ecl136II	GAGCTC	1 cut(s)	554
Eco130I	CCWWGG	2 cut(s)	108, 264
Eco147I	AGGCCT	1 cut(s)	321
Eco24I	GRGCYC	2 cut(s)	443, 556
Eco31I	GGTCTC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	268
Eco47III	AGCGCT	1 cut(s)	571
Eco53kI	GAGCTC	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	554
EcoT14I	CCWWGG	2 cut(s)	108, 264
EcoT38I	GRGCYC	2 cut(s)	443, 556
EgeI	GGCGCC	1 cut(s)	194
EheI	GGCGCC	1 cut(s)	194
ErhI	CCWWGG	2 cut(s)	108, 264
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	4 cut(s)	155, 211, 500, 535
FaiI	YATR	7 cut(s)	82, 153, 209, 498, 515, 533, 663
FatI	CATG	4 cut(s)	151, 207, 496, 531
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	9 cut(s)	26, 29, 32, 35, 38, 105, 196, 199, 202
FokI	GGATG	2 cut(s)	598, 724
FriOI	GRGCYC	2 cut(s)	443, 556
Fsp4HI	GCNGC	9 cut(s)	26, 29, 32, 35, 38, 105, 196, 199, 202
GlaI	GCGC	2 cut(s)	194, 571
GluI	GCNGC	9 cut(s)	26, 29, 32, 35, 38, 105, 196, 199, 202
GsaI	CCCAGC	1 cut(s)	524
HaeII	RGCGCY	2 cut(s)	196, 573
HaeIII	GGCC	4 cut(s)	176, 231, 321, 802
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	2 cut(s)	195, 572
Hin1I	GRCGYC	2 cut(s)	193, 602
Hin1II	CATG	4 cut(s)	155, 211, 500, 535
Hin6I	GCGC	2 cut(s)	193, 570
HinP1I	GCGC	2 cut(s)	193, 570
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	4 cut(s)	240, 629, 653, 707
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	4 cut(s)	176, 253, 632, 706
Hpy166II	GTNNAC	4 cut(s)	157, 279, 361, 527
Hpy188I	TCNGA	3 cut(s)	558, 607, 712
Hpy8I	GTNNAC	4 cut(s)	157, 279, 361, 527
Hpy99I	CGWCG	6 cut(s)	89, 313, 316, 461, 604, 607
HpyAV	CCTTC	2 cut(s)	268, 373
HpyCH4III	ACNGT	3 cut(s)	214, 491, 763
HpyCH4IV	ACGT	3 cut(s)	275, 459, 602
HpyCH4V	TGCA	3 cut(s)	344, 507, 549
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 34, 37, 201, 300, 546
HpyF3I	CTNAG	1 cut(s)	788
HpySE526I	ACGT	3 cut(s)	275, 459, 602
Hsp92I	GRCGYC	2 cut(s)	193, 602
Hsp92II	CATG	4 cut(s)	155, 211, 500, 535
HspAI	GCGC	2 cut(s)	193, 570
KasI	GGCGCC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	3 cut(s)	607, 676, 841
LmnI	GCTCC	2 cut(s)	209, 388
Lsp1109I	GCAGC	7 cut(s)	37, 40, 43, 46, 49, 91, 213
LweI	GCATC	1 cut(s)	516
MaeII	ACGT	3 cut(s)	275, 459, 602
MaeIII	GTNAC	2 cut(s)	485, 562
MalI	GATC	3 cut(s)	609, 678, 843
MboI	GATC	3 cut(s)	607, 676, 841
MhlI	GDGCHC	2 cut(s)	443, 556
MluCI	AATT	6 cut(s)	336, 345, 394, 469, 543, 639
Mly113I	GGCGCC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	585
MroXI	GAANNNNTTC	1 cut(s)	706
MseI	TTAA	1 cut(s)	758
MslI	CAYNNNNRTG	1 cut(s)	512
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	220, 221
Mva1269I	GAATGC	1 cut(s)	789
MwoI	GCNNNNNNNGC	6 cut(s)	31, 34, 37, 201, 300, 546
NarI	GGCGCC	1 cut(s)	193
NciI	CCSGG	2 cut(s)	220, 221
NdeII	GATC	3 cut(s)	607, 676, 841
NlaIII	CATG	4 cut(s)	155, 211, 500, 535
NlaIV	GGNNCC	2 cut(s)	194, 270
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	485, 562
PceI	AGGCCT	1 cut(s)	321
PctI	GAATGC	1 cut(s)	789
PdmI	GAANNNNTTC	1 cut(s)	706
PfeI	GAWTC	4 cut(s)	240, 629, 653, 707
PkrI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 106, 197, 200, 203
PluTI	GGCGCC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	556
PspFI	CCCAGC	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	194, 270
PspPI	GGNCC	3 cut(s)	175, 230, 268
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	758
SatI	GCNGC	9 cut(s)	26, 29, 32, 35, 38, 105, 196, 199, 202
Sau3AI	GATC	3 cut(s)	607, 676, 841
Sau96I	GGNCC	3 cut(s)	175, 230, 268
ScrFI	CCNGG	2 cut(s)	220, 221
SduI	GDGCHC	2 cut(s)	443, 556
SetI	ASST	9 cut(s)	184, 206, 260, 266, 278, 462, 556, 605, 819
SfaNI	GCATC	1 cut(s)	516
SfoI	GGCGCC	1 cut(s)	194
SinI	GGWCC	1 cut(s)	268
SmaI	CCCGGG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	6 cut(s)	336, 345, 394, 469, 543, 639
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	3 cut(s)	196, 199, 614
SspDI	GGCGCC	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	556
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	218, 219
StyI	CCWWGG	2 cut(s)	108, 264
TaaI	ACNGT	3 cut(s)	214, 491, 763
TaiI	ACGT	3 cut(s)	278, 462, 605
TaqI	TCGA	3 cut(s)	314, 324, 510
TasI	AATT	6 cut(s)	336, 345, 394, 469, 543, 639
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	2 cut(s)	198, 201
TfiI	GAWTC	4 cut(s)	240, 629, 653, 707
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TscAI	CASTG	1 cut(s)	494
TseFI	GTSAC	2 cut(s)	485, 562
TseI	GCWGC	7 cut(s)	25, 28, 31, 34, 37, 104, 201
Tsp45I	GTSAC	2 cut(s)	485, 562
TspDTI	ATGAA	4 cut(s)	485, 548, 726, 762
TspMI	CCCGGG	1 cut(s)	219
TspRI	CASTG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	469
XmaI	CCCGGG	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	706
ZraI	GACGTC	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.