Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016809

Physical Location & Seq

Genomic Coordinates Reverse (-)

4014365 .. 4015581

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCACAAGACTTATATTAGCATCTTATCTATTGACTACGGGCATGTACTTCCATTCATTTCTTCACTGACTCAATCATATGACCCACTATATCTACCTTTTCCATTTTCCCTTCTCACCCATCAATCCCTTCAGATACTTGCACTCTCTCAGCATAATCTCCAATCCAAAATCATGTTCAGTCCCAATAACTCCACCACCAACCCCCTCAAACAACTCGTCGACACCATCTTCTCCTACGACGGCACTGTCATGCTCGCCGCCGTGGTCTCTCTTCTTCTCGTCATTCTCTTCGTCCTCATCCTCCACATCTACGCCAAGTGGTTCTTAGCTCAAGCCCACCGCCGCCGCCGGGGCAGCTCCGTCACCGTATCTCATGTCCTCGGCCCGAACCGCTTCCAGAACTTCCACACCTTCTCCTTGGACGCAAACTCGGTCACCATTAGCAATCTTTCGAGCTCTGCTTCATCCAAGGGCCTAGACTCGAAAACCATCTCCGCCATTCCTCTATTCGTGTACAAAACAGAGGAGCTGGAGGAGATGGCGGAGAAGGAAAATTACAAAAATGGGGTTTTGGAGATGGAGTGTGTAATTTGTCTAAGCCTGTTTGAGGACAACGACATGGGGAGGAGTTTGCCGAAATGTGGTCACTGTTTCCATGTCGAGTGTATCGATATGTGGCTGGGATCTCACGCGAACTGCCCAATTTGCAGAGCTCCGATAGTGGTTGATACGATGGCGGAACGGGTTGCCGGTGAAGAGGAATCGGTTGTGATTGATGTTTTGGATTCTGGGTATGTTTCAAATTGTGATATTGTTCATGTTGGAGCGATGGGTACTGAAACCGAATCGACACCTTCATCGTCTTCGTCTTCCTCGTCATCATCGCCATTAATGGTGGGGTATTCATTGAAGAGAATGCTGAGCAGAAATAGGCCGGAAAGTGGCAAGGTTTTCCCAACTACAAATGGGAGTGATCAAACAGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

331

Amino Acids

36.36

Weight (kDa)

5.71

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	194 - 238	4.7e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	195 - 238	1.8e-12	Ring finger domain
zf-RING_11	PF17123	195 - 224	3.4e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	195 - 237	3.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	196 - 235	9.3e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016809)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39090
malus_domestica	MD03G1064500.v1.1 MD11G1068600.v1.1
prunus_persica	Prupe.6G053700_v2.0.a1
pyrus_communis	pycom03g05180
rosa_chinensis	RchiOBHm_Chr5g0070411
rosa_laevigata	RLG00000036131
rosa_multiflora	Rmu_sc0007961.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010790
rosa_rugosa	Rorug05G0405800
rosa_samantha	Rh5BG479500 Rh5CG503700 Rh5DG491500
rosa_wichuraiana	Rw5G042990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	695
AciI	CCGC	8 cut(s)	261, 343, 346, 349, 394, 498, 545, 740
AclWI	GGATC	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	3 cut(s)	48, 518, 838
AfiI	CCNNNNNNNGG	4 cut(s)	352, 610, 644, 944
AgsI	TTSAA	2 cut(s)	804, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	5 cut(s)	332, 360, 459, 532, 716
AluI	AGCT	5 cut(s)	332, 360, 459, 532, 716
Alw21I	GWGCWC	2 cut(s)	461, 718
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	694
AoxI	GGCC	3 cut(s)	385, 475, 935
ApeKI	GCWGC	1 cut(s)	357
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AseI	ATTAAT	1 cut(s)	893
Asp700I	GAANNNNTTC	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	386, 475
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	4 cut(s)	109, 358, 430, 767
BanII	GRGCYC	2 cut(s)	461, 718
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
BbsI	GAAGAC	2 cut(s)	858, 864
Bbv12I	GWGCWC	2 cut(s)	461, 718
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	7 cut(s)	129, 236, 500, 535, 574, 730, 826
BceAI	ACGGC	2 cut(s)	248, 259
BclI	TGATCA	1 cut(s)	976
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	479
BglI	GCCNNNNNGGC	1 cut(s)	354
BisI	GCNGC	4 cut(s)	261, 346, 349, 358
BlpI	GCTNAGC	1 cut(s)	923
BlsI	GCNGC	4 cut(s)	262, 347, 350, 359
Bme1390I	CCNGG	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	386, 475
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	2 cut(s)	30, 976
BpiI	GAAGAC	2 cut(s)	858, 864
BpmI	CTGGAG	1 cut(s)	554
Bpu1102I	GCTNAGC	1 cut(s)	923
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	5 cut(s)	264, 352, 382, 420, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 569, 599
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 610, 644, 944
Bse118I	RCCGGY	1 cut(s)	752
BseCI	ATCGAT	1 cut(s)	672
BseDI	CCNNGG	5 cut(s)	264, 352, 382, 420, 471
BseGI	GGATG	2 cut(s)	300, 467
BseLI	CCNNNNNNNGG	4 cut(s)	352, 610, 644, 944
BseMII	CTCAG	2 cut(s)	164, 914
BseRI	GAGGAG	3 cut(s)	542, 551, 643
BseXI	GCAGC	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	682
Bsh1236I	CGCG	1 cut(s)	695
BshFI	GGCC	3 cut(s)	387, 477, 937
BshVI	ATCGAT	1 cut(s)	672
BsiHKAI	GWGCWC	2 cut(s)	461, 718
BsiSI	CCGG	3 cut(s)	352, 753, 938
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	4 cut(s)	352, 610, 644, 944
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	3 cut(s)	387, 477, 937
Bso31I	GGTCTC	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	461, 718
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	686, 976
Bsp1720I	GCTNAGC	1 cut(s)	923
BspACI	CCGC	8 cut(s)	261, 343, 346, 349, 394, 498, 545, 740
BspANI	GGCC	3 cut(s)	387, 477, 937
BspCNI	CTCAG	2 cut(s)	163, 915
BspDI	ATCGAT	1 cut(s)	672
BspFNI	CGCG	1 cut(s)	695
BspPI	GGATC	1 cut(s)	694
BspTNI	GGTCTC	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	752
BsrGI	TGTACA	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	5 cut(s)	264, 352, 382, 420, 471
BssMI	GATC	2 cut(s)	686, 976
BssT1I	CCWWGG	2 cut(s)	420, 471
Bst4CI	ACNGT	3 cut(s)	250, 370, 653
Bst6I	CTCTTC	4 cut(s)	279, 296, 753, 908
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	150, 328, 599, 923
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	436
BstENI	CCTNNNNNAGG	1 cut(s)	608
BstF5I	GGATG	2 cut(s)	300, 467
BstFNI	CGCG	1 cut(s)	695
BstKTI	GATC	2 cut(s)	689, 979
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	686, 976
BstMWI	GCNNNNNNNGC	4 cut(s)	354, 357, 393, 708
BstNSI	RCATGY	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	695
BstV1I	GCAGC	1 cut(s)	369
BstV2I	GAAGAC	2 cut(s)	858, 864
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
Bsu15I	ATCGAT	1 cut(s)	672
BsuRI	GGCC	3 cut(s)	387, 477, 937
BsuTUI	ATCGAT	1 cut(s)	672
BtgI	CCRYGG	1 cut(s)	264
BtgZI	GCGATG	2 cut(s)	845, 870
BtsCI	GGATG	2 cut(s)	300, 467
BtsIMutI	CAGTG	3 cut(s)	65, 246, 649
Cac8I	GCNNGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	752
Cfr13I	GGNCC	2 cut(s)	386, 475
ClaI	ATCGAT	1 cut(s)	672
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	47, 517, 837
CviAII	CATG	7 cut(s)	44, 175, 253, 377, 622, 659, 821
CviQI	GTAC	3 cut(s)	47, 517, 837
DdeI	CTNAG	4 cut(s)	150, 328, 599, 923
DpnI	GATC	2 cut(s)	688, 978
DpnII	GATC	2 cut(s)	686, 976
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	4 cut(s)	279, 296, 753, 908
EarI	CTCTTC	4 cut(s)	279, 296, 753, 908
EciI	GGCGGA	3 cut(s)	487, 560, 755
Ecl136II	GAGCTC	2 cut(s)	459, 716
Eco130I	CCWWGG	2 cut(s)	420, 471
Eco24I	GRGCYC	2 cut(s)	461, 718
Eco31I	GGTCTC	1 cut(s)	274
Eco53kI	GAGCTC	2 cut(s)	459, 716
Eco57I	CTGAAG	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	436
EcoICRI	GAGCTC	2 cut(s)	459, 716
EcoNI	CCTNNNNNAGG	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	475
EcoO65I	GGTNACC	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	420, 471
EcoT38I	GRGCYC	2 cut(s)	461, 718
ErhI	CCWWGG	2 cut(s)	420, 471
FaeI	CATG	7 cut(s)	47, 178, 256, 380, 625, 662, 824
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	7 cut(s)	43, 174, 252, 376, 621, 658, 820
FauNDI	CATATG	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	976
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	4 cut(s)	261, 346, 349, 358
FokI	GGATG	2 cut(s)	287, 454
FriOI	GRGCYC	2 cut(s)	461, 718
Fsp4HI	GCNGC	4 cut(s)	261, 346, 349, 358
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	4 cut(s)	261, 346, 349, 358
GsaI	CCCAGC	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	3 cut(s)	387, 477, 937
HapII	CCGG	3 cut(s)	352, 753, 938
HgaI	GACGC	1 cut(s)	434
Hin1II	CATG	7 cut(s)	47, 178, 256, 380, 625, 662, 824
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	5 cut(s)	70, 482, 764, 788, 848
HpaII	CCGG	3 cut(s)	352, 753, 938
HphI	GGTGA	4 cut(s)	109, 358, 430, 767
Hpy166II	GTNNAC	2 cut(s)	223, 517
Hpy188I	TCNGA	2 cut(s)	135, 720
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	2 cut(s)	223, 517
Hpy99I	CGWCG	2 cut(s)	224, 245
HpyAV	CCTTC	5 cut(s)	122, 140, 424, 544, 867
HpyCH4III	ACNGT	3 cut(s)	250, 370, 653
HpyCH4V	TGCA	3 cut(s)	4, 143, 711
HpyF10VI	GCNNNNNNNGC	4 cut(s)	354, 357, 393, 708
HpyF3I	CTNAG	4 cut(s)	150, 328, 599, 923
Hsp92II	CATG	7 cut(s)	47, 178, 256, 380, 625, 662, 824
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	2 cut(s)	686, 976
LmnI	GCTCC	4 cut(s)	365, 529, 721, 827
LpnPI	CCDG	8 cut(s)	365, 413, 518, 617, 668, 766, 777, 951
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	2 cut(s)	30, 976
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	3 cut(s)	364, 436, 647
MalI	GATC	2 cut(s)	688, 978
MboI	GATC	2 cut(s)	686, 976
MboII	GAAGA	9 cut(s)	54, 223, 266, 269, 283, 770, 858, 864, 925
MflI	RGATCY	1 cut(s)	686
MhlI	GDGCHC	2 cut(s)	461, 718
MluCI	AATT	4 cut(s)	556, 591, 705, 805
MlyI	GAGTC	2 cut(s)	64, 476
MmeI	TCCRAC	1 cut(s)	805
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	1 cut(s)	893
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	3 cut(s)	352, 753, 938
MspR9I	CCNGG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	924
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	4 cut(s)	354, 357, 393, 708
NciI	CCSGG	1 cut(s)	353
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	2 cut(s)	686, 976
NlaIII	CATG	7 cut(s)	47, 178, 256, 380, 625, 662, 824
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	3 cut(s)	364, 436, 647
NspI	RCATGY	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	2 cut(s)	669, 875
PctI	GAATGC	1 cut(s)	924
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	3 cut(s)	764, 788, 848
PkrI	GCNGC	4 cut(s)	262, 347, 350, 359
PleI	GAGTC	2 cut(s)	64, 476
PpsI	GAGTC	2 cut(s)	64, 476
PshBI	ATTAAT	1 cut(s)	893
Psp124BI	GAGCTC	2 cut(s)	461, 718
PspEI	GGTNACC	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	682
PspPI	GGNCC	2 cut(s)	386, 475
PsuI	RGATCY	1 cut(s)	686
RsaI	GTAC	3 cut(s)	48, 518, 838
RsaNI	GTAC	3 cut(s)	47, 517, 837
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	2 cut(s)	461, 718
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	893
SatI	GCNGC	4 cut(s)	261, 346, 349, 358
Sau3AI	GATC	2 cut(s)	686, 976
Sau96I	GGNCC	2 cut(s)	386, 475
SchI	GAGTC	2 cut(s)	64, 476
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	2 cut(s)	461, 718
SetI	ASST	9 cut(s)	100, 334, 362, 416, 461, 534, 718, 859, 954
SfaNI	GCATC	2 cut(s)	30, 976
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	556, 591, 705, 805
SsiI	CCGC	8 cut(s)	261, 343, 346, 349, 394, 498, 545, 740
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	2 cut(s)	461, 718
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	2 cut(s)	420, 471
TaaI	ACNGT	3 cut(s)	250, 370, 653
TaqI	TCGA	6 cut(s)	222, 455, 485, 663, 672, 851
TaqII	GACCGA	1 cut(s)	424
TasI	AATT	4 cut(s)	556, 591, 705, 805
TatI	WGTACW	2 cut(s)	46, 516
TauI	GCSGC	3 cut(s)	263, 348, 351
TfiI	GAWTC	3 cut(s)	764, 788, 848
Tru1I	TTAA	1 cut(s)	893
Tru9I	TTAA	1 cut(s)	893
TscAI	CASTG	3 cut(s)	72, 253, 656
TseFI	GTSAC	3 cut(s)	364, 436, 647
TseI	GCWGC	1 cut(s)	357
Tsp45I	GTSAC	3 cut(s)	364, 436, 647
TspDTI	ATGAA	5 cut(s)	46, 456, 809, 849, 897
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	3 cut(s)	72, 253, 656
VspI	ATTAAT	1 cut(s)	893
XagI	CCTNNNNNAGG	1 cut(s)	608
XceI	RCATGY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.