Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016809

Physical Location & Seq

Genomic Coordinates Forward (+)

76263936 .. 76265626

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG479500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGATTGACACACTACACATAAAGACTCTCCTCCAGTCCTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCAAAATCTACTTTTCAAATCTCATCACCCATCAGTCCTTCAATTACTTCTCAAAACCGAGACTCATAATGTTCAGCTTCAACCCCACAGAAACCCCAAACCAAACCACCACCACCACCACCAACCCTCTCAAGCACCTCTTTGACACCATCTTCTCCTACAACGGCAATGTCATGCTCGCTGCCTTGGTCTCCCTCCTCCTCGTCATTCTCTTCGTCCTCCTCCTCCACGTCTACGCCAAATGGTTCTTAGCTCAAGCCCACCACCGCCGCCGCGGCTCCATGGCCGTCTCCCGCCGTGTTCTCGGCCCCAACCGCTTCCAGCATTTCCACACCTTCACCTTCGACCCGACTACCAACAATCTCACCACCAATACTCCCAAGGGTCTTGACTCCTCCACAATCGCCACCATTCCTTTGTTTGTGTACAAATCTGAAGAGGAGCATTTTCACCAGCACGTGGAGTGTGTTATTTGTCTGAGCCCTTTTGAGGACGGCGACGTCGGCCGGAGCTTGCCCAAATGCGGCCACTGCTTTCACGTCGAGTGCATCGATATGTGGTTGCATTCGCACATGAGCTGCCCGATTTGCCGAGCTCCGGTAGTCTCACCGGCACAGTCTGATCAGGTTAAACCTGAGGTGGTGGGTGAGGAATCTGCAGCGGAAGCAGTAGTAATTGAAGTTTCGGATTCTGGGTATGTTGAGAATCATCATGATGGTGTTGAAGAAACTAGTGCTGATTCCTTATCGGATGAATCTTCGTCTTCGCCATTGATCGTGGGTTGTTCGTTGAAGAGAATGCTGAGCAGGAATAGACCAGAAAGCAAGGTGTTCCCATCTACAAATGGGAATGATGTGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

310

Amino Acids

34.54

Weight (kDa)

6.16

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	176 - 220	1.8e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	177 - 220	5.2e-13	Ring finger domain
zf-RING_11	PF17123	177 - 206	1.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	177 - 219	2.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016809)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39090
malus_domestica	MD03G1064500.v1.1 MD11G1068600.v1.1
prunus_persica	Prupe.6G053700_v2.0.a1
pyrus_communis	pycom03g05180
rosa_chinensis	RchiOBHm_Chr5g0070411
rosa_laevigata	RLG00000036131
rosa_multiflora	Rmu_sc0007961.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010790
rosa_rugosa	Rorug05G0405800
rosa_samantha	Rh5BG479500 Rh5CG503700 Rh5DG491500
rosa_wichuraiana	Rw5G042990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
AatII	GACGTC	1 cut(s)	570
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	342
AciI	CCGC	8 cut(s)	334, 337, 340, 342, 361, 382, 591, 728
AcoI	YGGCCR	3 cut(s)	351, 571, 592
AcuI	CTGAAG	1 cut(s)	522
AcvI	CACGTG	1 cut(s)	526
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	4 cut(s)	526, 556, 590, 664
AgsI	TTSAA	6 cut(s)	84, 109, 148, 746, 791, 859
AhlI	ACTAGT	1 cut(s)	797
AjiI	CACGTC	2 cut(s)	298, 607
AluBI	AGCT	5 cut(s)	144, 320, 579, 645, 662
AluI	AGCT	5 cut(s)	144, 320, 579, 645, 662
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	4 cut(s)	121, 262, 361, 676
AoxI	GGCC	4 cut(s)	351, 373, 571, 592
ApeKI	GCWGC	3 cut(s)	248, 645, 725
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	6 cut(s)	85, 397, 424, 509, 666, 725
AxyI	CCTNAGG	1 cut(s)	702
BanII	GRGCYC	2 cut(s)	551, 664
BbrPI	CACGTG	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	3 cut(s)	235, 632, 737
BccI	CCATC	4 cut(s)	105, 224, 776, 910
BceAI	ACGGC	4 cut(s)	247, 338, 348, 577
BclI	TGATCA	1 cut(s)	688
BcoDI	GTCTC	4 cut(s)	121, 262, 361, 676
BcuI	ACTAGT	1 cut(s)	797
BfaI	CTAG	1 cut(s)	798
BfmI	CTRYAG	1 cut(s)	723
BglI	GCCNNNNNGGC	1 cut(s)	342
BisI	GCNGC	7 cut(s)	249, 337, 340, 343, 592, 646, 726
BlpI	GCTNAGC	1 cut(s)	869
BlsI	GCNGC	7 cut(s)	250, 338, 341, 344, 593, 647, 727
BmgBI	CACGTC	2 cut(s)	298, 607
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	346, 376
BmsI	GCATC	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	17
Bpu1102I	GCTNAGC	1 cut(s)	869
BpuEI	CTTGAG	2 cut(s)	182, 306
Bsa29I	ATCGAT	1 cut(s)	618
BsaAI	YACGTR	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	4 cut(s)	252, 340, 348, 447
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	4 cut(s)	526, 556, 590, 664
Bse118I	RCCGGY	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	34
Bse21I	CCTNAGG	1 cut(s)	702
Bse3DI	GCAATG	1 cut(s)	241
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	4 cut(s)	252, 340, 348, 447
BseGI	GGATG	1 cut(s)	823
BseLI	CCNNNNNNNGG	4 cut(s)	526, 556, 590, 664
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	3 cut(s)	536, 693, 860
BseNI	ACTGG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	571
BseXI	GCAGC	3 cut(s)	235, 632, 737
Bsh1236I	CGCG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	574
BshFI	GGCC	4 cut(s)	353, 375, 573, 594
BshVI	ATCGAT	1 cut(s)	618
BsiEI	CGRYCG	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	3 cut(s)	574, 665, 677
BslI	CCNNNNNNNGG	4 cut(s)	526, 556, 590, 664
BsmAI	GTCTC	4 cut(s)	121, 262, 361, 676
BsmBI	CGTCTC	1 cut(s)	361
BsmI	GAATGC	2 cut(s)	631, 870
BsnI	GGCC	4 cut(s)	353, 375, 573, 594
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	551, 664
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	688, 840
Bsp1720I	GCTNAGC	1 cut(s)	869
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	8 cut(s)	334, 337, 340, 342, 361, 382, 591, 728
BspANI	GGCC	4 cut(s)	353, 375, 573, 594
BspCNI	CTCAG	3 cut(s)	537, 694, 861
BspDI	ATCGAT	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	346, 376
BspMAI	CTGCAG	1 cut(s)	727
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	676
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	4 cut(s)	252, 340, 348, 447
BssMI	GATC	2 cut(s)	688, 840
BssNI	GRCGYC	1 cut(s)	567
BssT1I	CCWWGG	3 cut(s)	252, 348, 447
Bst4CI	ACNGT	1 cut(s)	684
Bst6I	CTCTTC	3 cut(s)	284, 498, 854
BstACI	GRCGYC	1 cut(s)	567
BstAUI	TGTACA	1 cut(s)	492
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	246, 581
BstDEI	CTNAG	4 cut(s)	316, 545, 702, 869
BstDSI	CCRYGG	2 cut(s)	340, 348
BstF5I	GGATG	1 cut(s)	823
BstFNI	CGCG	1 cut(s)	342
BstKTI	GATC	2 cut(s)	691, 843
BstMAI	GTCTC	4 cut(s)	121, 262, 361, 676
BstMBI	GATC	2 cut(s)	688, 840
BstMCI	CGRYCG	1 cut(s)	574
BstMWI	GCNNNNNNNGC	6 cut(s)	342, 381, 570, 597, 654, 731
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	235, 632, 737
BstV2I	GAAGAC	1 cut(s)	822
BstZI	CGGCCG	1 cut(s)	571
Bsu15I	ATCGAT	1 cut(s)	618
Bsu36I	CCTNAGG	1 cut(s)	702
BsuRI	GGCC	4 cut(s)	353, 375, 573, 594
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	2 cut(s)	340, 348
BtrI	CACGTC	2 cut(s)	298, 607
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	246, 581
CciI	TCATGA	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	374
Cfr42I	CCGCGG	1 cut(s)	343
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	4 cut(s)	241, 349, 640, 779
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	4 cut(s)	316, 545, 702, 869
DpnI	GATC	2 cut(s)	690, 842
DpnII	GATC	2 cut(s)	688, 840
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
EaeI	YGGCCR	3 cut(s)	351, 571, 592
EagI	CGGCCG	1 cut(s)	571
Eam1104I	CTCTTC	3 cut(s)	284, 498, 854
EarI	CTCTTC	3 cut(s)	284, 498, 854
Ecl136II	GAGCTC	1 cut(s)	662
EclXI	CGGCCG	1 cut(s)	571
Eco130I	CCWWGG	3 cut(s)	252, 348, 447
Eco24I	GRGCYC	2 cut(s)	551, 664
Eco31I	GGTCTC	1 cut(s)	262
Eco52I	CGGCCG	1 cut(s)	571
Eco53kI	GAGCTC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	526
Eco81I	CCTNAGG	1 cut(s)	702
EcoICRI	GAGCTC	1 cut(s)	662
EcoT14I	CCWWGG	3 cut(s)	252, 348, 447
EcoT38I	GRGCYC	2 cut(s)	551, 664
ErhI	CCWWGG	3 cut(s)	252, 348, 447
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	4 cut(s)	244, 352, 643, 782
FaiI	YATR	8 cut(s)	20, 134, 242, 350, 623, 641, 765, 780
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	4 cut(s)	240, 348, 639, 778
FauI	CCCGC	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	7 cut(s)	249, 337, 340, 343, 592, 646, 726
FokI	GGATG	1 cut(s)	830
FriOI	GRGCYC	2 cut(s)	551, 664
Fsp4HI	GCNGC	7 cut(s)	249, 337, 340, 343, 592, 646, 726
FspBI	CTAG	1 cut(s)	798
GluI	GCNGC	7 cut(s)	249, 337, 340, 343, 592, 646, 726
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	4 cut(s)	353, 375, 573, 594
HapII	CCGG	3 cut(s)	574, 665, 677
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	4 cut(s)	244, 352, 643, 782
HinfI	GANTC	8 cut(s)	25, 129, 458, 719, 755, 772, 806, 821
HpaII	CCGG	3 cut(s)	574, 665, 677
HphI	GGTGA	6 cut(s)	85, 397, 424, 509, 666, 725
Hpy166II	GTNNAC	2 cut(s)	301, 493
Hpy188I	TCNGA	5 cut(s)	502, 546, 688, 754, 817
Hpy188III	TCNNGA	2 cut(s)	455, 779
Hpy8I	GTNNAC	2 cut(s)	301, 493
Hpy99I	CGWCG	3 cut(s)	569, 572, 611
HpyAV	CCTTC	3 cut(s)	115, 412, 418
HpyCH4III	ACNGT	1 cut(s)	684
HpyCH4IV	ACGT	4 cut(s)	297, 525, 567, 606
HpyCH4V	TGCA	3 cut(s)	615, 631, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	342, 381, 570, 597, 654, 731
HpyF3I	CTNAG	4 cut(s)	316, 545, 702, 869
HpySE526I	ACGT	4 cut(s)	297, 525, 567, 606
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	4 cut(s)	244, 352, 643, 782
Ksp22I	TGATCA	1 cut(s)	688
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	688, 840
LmnI	GCTCC	4 cut(s)	350, 508, 576, 667
Lsp1109I	GCAGC	3 cut(s)	235, 632, 737
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	1 cut(s)	798
MaeII	ACGT	4 cut(s)	297, 525, 567, 606
MalI	GATC	2 cut(s)	690, 842
MboI	GATC	2 cut(s)	688, 840
MboII	GAAGA	7 cut(s)	211, 271, 515, 803, 816, 822, 871
MhlI	GDGCHC	2 cut(s)	551, 664
MluCI	AATT	2 cut(s)	109, 741
MlyI	GAGTC	3 cut(s)	19, 123, 452
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	3 cut(s)	620, 780, 783
MspA1I	CMGCKG	2 cut(s)	342, 728
MspI	CCGG	3 cut(s)	574, 665, 677
Mva1269I	GAATGC	2 cut(s)	631, 870
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	6 cut(s)	342, 381, 570, 597, 654, 731
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	2 cut(s)	688, 840
NlaIII	CATG	4 cut(s)	244, 352, 643, 782
NlaIV	GGNNCC	2 cut(s)	346, 376
NmeAIII	GCCGAG	2 cut(s)	351, 683
PagI	TCATGA	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PctI	GAATGC	2 cut(s)	631, 870
PfeI	GAWTC	5 cut(s)	719, 755, 772, 806, 821
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	7 cut(s)	250, 338, 341, 344, 593, 647, 727
PleI	GAGTC	3 cut(s)	19, 123, 452
PmaCI	CACGTG	1 cut(s)	526
PmlI	CACGTG	1 cut(s)	526
PpsI	GAGTC	3 cut(s)	19, 123, 452
Ppu21I	YACGTR	1 cut(s)	526
Psp124BI	GAGCTC	1 cut(s)	664
PspCI	CACGTG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	346, 376
PspPI	GGNCC	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	727
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	3 cut(s)	620, 780, 783
SacI	GAGCTC	1 cut(s)	664
SacII	CCGCGG	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	7 cut(s)	249, 337, 340, 343, 592, 646, 726
Sau3AI	GATC	2 cut(s)	688, 840
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	3 cut(s)	19, 123, 452
SduI	GDGCHC	2 cut(s)	551, 664
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	1 cut(s)	723
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SmiMI	CAYNNNNRTG	3 cut(s)	620, 780, 783
SmlI	CTYRAG	2 cut(s)	197, 321
SmoI	CTYRAG	2 cut(s)	197, 321
SpeI	ACTAGT	1 cut(s)	797
Sse9I	AATT	2 cut(s)	109, 741
SsiI	CCGC	8 cut(s)	334, 337, 340, 342, 361, 382, 591, 728
SspMI	CTAG	1 cut(s)	798
SstI	GAGCTC	1 cut(s)	664
StyI	CCWWGG	3 cut(s)	252, 348, 447
TaaI	ACNGT	1 cut(s)	684
TaiI	ACGT	4 cut(s)	300, 528, 570, 609
TaqI	TCGA	3 cut(s)	411, 609, 618
TasI	AATT	2 cut(s)	109, 741
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	4 cut(s)	339, 342, 345, 594
TfiI	GAWTC	5 cut(s)	719, 755, 772, 806, 821
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	1 cut(s)	602
TseI	GCWGC	3 cut(s)	248, 645, 725
TspDTI	ATGAA	1 cut(s)	834
TspRI	CASTG	1 cut(s)	602
Van91I	CCANNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	798
ZraI	GACGTC	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.