Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007961.1

Orthogroup ID

OG0016809

Physical Location & Seq

Genomic Coordinates Reverse (-)

29609 .. 30409

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007961.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgttcagcttcaaccccacagaaaccccaaaccaaaccaccaccaccaccaccaccaaccctctcaagcacctctttgacaccatcttctcctacaacggcaatgtcatgctcgctgccttggtctccctcctcctcgtcattctcttcgtcctcctcctccacgtctacgccaaatggttcttagctcaagcccaccaccgccgccgcggctccatggccgtctcccgccgtgtcctcggccccaaccgcttccagcatttccacaccttcaccttcgacccgactaccaacaatctcaccaccaatactcccaagggtcttgactcctccacaatcgccaccattcctttgtttgtgtacaaatctgaagaggagcattttcaccagcacgtggagtgtgttatttgtctgagcccttttgaggacggcgacgtcggccggagcttgcctaaatgcggccactgctttcacgtcgagtgcatcgatatgtggttgcattcgcacatgagctgcccgatttgccgagctccggtagtctcaccggcacagtctgatcaggttaaacctgaggtggtgggtgaggaatctgcagcggaagcagtagttattgaagtttcggattctgggtatgttgagaatcatcatgatggtgttgaagaaactagtgctgattccttatcggatgaatcttcgtcttcgccattgatcgtgggttgttcgttgaagagaatgctgagcaggaatagaccagaaagcaaggtgttcccatctacaaatgggaatgatgtgagtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

266

Amino Acids

29.5

Weight (kDa)

5.79

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016809)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39090
malus_domestica	MD03G1064500.v1.1 MD11G1068600.v1.1
prunus_persica	Prupe.6G053700_v2.0.a1
pyrus_communis	pycom03g05180
rosa_chinensis	RchiOBHm_Chr5g0070411
rosa_laevigata	RLG00000036131
rosa_multiflora	Rmu_sc0007961.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010790
rosa_rugosa	Rorug05G0405800
rosa_samantha	Rh5BG479500 Rh5CG503700 Rh5DG491500
rosa_wichuraiana	Rw5G042990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AatII	GACGTC	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	210
AciI	CCGC	8 cut(s)	202, 205, 208, 210, 229, 250, 459, 596
AcoI	YGGCCR	3 cut(s)	219, 439, 460
AcuI	CTGAAG	1 cut(s)	390
AcvI	CACGTG	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	394, 424, 458, 532
AgsI	TTSAA	4 cut(s)	13, 614, 659, 727
AhlI	ACTAGT	1 cut(s)	665
AjiI	CACGTC	2 cut(s)	166, 475
AluBI	AGCT	5 cut(s)	9, 188, 447, 513, 530
AluI	AGCT	5 cut(s)	9, 188, 447, 513, 530
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	3 cut(s)	130, 229, 544
AoxI	GGCC	4 cut(s)	219, 241, 439, 460
ApeKI	GCWGC	3 cut(s)	116, 513, 593
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	5 cut(s)	265, 292, 377, 534, 593
AxyI	CCTNAGG	1 cut(s)	570
BanII	GRGCYC	2 cut(s)	419, 532
BbrPI	CACGTG	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	103, 500, 605
BccI	CCATC	3 cut(s)	92, 644, 778
BceAI	ACGGC	4 cut(s)	115, 206, 216, 445
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	3 cut(s)	130, 229, 544
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	591
BglI	GCCNNNNNGGC	1 cut(s)	210
BisI	GCNGC	7 cut(s)	117, 205, 208, 211, 460, 514, 594
BlpI	GCTNAGC	1 cut(s)	737
BlsI	GCNGC	7 cut(s)	118, 206, 209, 212, 461, 515, 595
BmgBI	CACGTC	2 cut(s)	166, 475
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	214, 244
BmsI	GCATC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	737
BpuEI	CTTGAG	2 cut(s)	50, 174
Bsa29I	ATCGAT	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	5 cut(s)	120, 208, 216, 238, 315
BsaWI	WCCGGW	1 cut(s)	532
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	4 cut(s)	394, 424, 458, 532
Bse118I	RCCGGY	1 cut(s)	544
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	5 cut(s)	120, 208, 216, 238, 315
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	4 cut(s)	394, 424, 458, 532
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	3 cut(s)	404, 561, 728
BseRI	GAGGAG	6 cut(s)	122, 125, 146, 149, 319, 389
BseX3I	CGGCCG	1 cut(s)	439
BseXI	GCAGC	3 cut(s)	103, 500, 605
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	442
BshFI	GGCC	4 cut(s)	221, 243, 441, 462
BshVI	ATCGAT	1 cut(s)	486
BsiEI	CGRYCG	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	3 cut(s)	442, 533, 545
BslI	CCNNNNNNNGG	4 cut(s)	394, 424, 458, 532
BsmAI	GTCTC	3 cut(s)	130, 229, 544
BsmBI	CGTCTC	1 cut(s)	229
BsmI	GAATGC	2 cut(s)	499, 738
BsnI	GGCC	4 cut(s)	221, 243, 441, 462
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	419, 532
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	556, 708
Bsp1720I	GCTNAGC	1 cut(s)	737
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	8 cut(s)	202, 205, 208, 210, 229, 250, 459, 596
BspANI	GGCC	4 cut(s)	221, 243, 441, 462
BspCNI	CTCAG	3 cut(s)	405, 562, 729
BspDI	ATCGAT	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	214, 244
BspMAI	CTGCAG	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	544
BsrGI	TGTACA	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	5 cut(s)	120, 208, 216, 238, 315
BssMI	GATC	2 cut(s)	556, 708
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	120, 216, 315
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	3 cut(s)	152, 366, 722
BstACI	GRCGYC	1 cut(s)	435
BstAUI	TGTACA	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	114, 449
BstDEI	CTNAG	4 cut(s)	184, 413, 570, 737
BstDSI	CCRYGG	2 cut(s)	208, 216
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	559, 711
BstMAI	GTCTC	3 cut(s)	130, 229, 544
BstMBI	GATC	2 cut(s)	556, 708
BstMCI	CGRYCG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 249, 438, 465, 522, 599
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	103, 500, 605
BstV2I	GAAGAC	1 cut(s)	690
BstZI	CGGCCG	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	486
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	4 cut(s)	221, 243, 441, 462
BsuTUI	ATCGAT	1 cut(s)	486
BtgI	CCRYGG	2 cut(s)	208, 216
BtrI	CACGTC	2 cut(s)	166, 475
BtsCI	GGATG	1 cut(s)	691
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	114, 449
CciI	TCATGA	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	242
Cfr42I	CCGCGG	1 cut(s)	211
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	4 cut(s)	109, 217, 508, 647
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	4 cut(s)	184, 413, 570, 737
DpnI	GATC	2 cut(s)	558, 710
DpnII	GATC	2 cut(s)	556, 708
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	3 cut(s)	219, 439, 460
EagI	CGGCCG	1 cut(s)	439
Eam1104I	CTCTTC	3 cut(s)	152, 366, 722
EarI	CTCTTC	3 cut(s)	152, 366, 722
Ecl136II	GAGCTC	1 cut(s)	530
EclXI	CGGCCG	1 cut(s)	439
Eco130I	CCWWGG	3 cut(s)	120, 216, 315
Eco24I	GRGCYC	2 cut(s)	419, 532
Eco31I	GGTCTC	1 cut(s)	130
Eco52I	CGGCCG	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	390
Eco72I	CACGTG	1 cut(s)	394
Eco81I	CCTNAGG	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	530
EcoT14I	CCWWGG	3 cut(s)	120, 216, 315
EcoT38I	GRGCYC	2 cut(s)	419, 532
ErhI	CCWWGG	3 cut(s)	120, 216, 315
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	4 cut(s)	112, 220, 511, 650
FaiI	YATR	6 cut(s)	110, 218, 491, 509, 633, 648
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	4 cut(s)	108, 216, 507, 646
FauI	CCCGC	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	7 cut(s)	117, 205, 208, 211, 460, 514, 594
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	2 cut(s)	419, 532
Fsp4HI	GCNGC	7 cut(s)	117, 205, 208, 211, 460, 514, 594
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	7 cut(s)	117, 205, 208, 211, 460, 514, 594
HaeIII	GGCC	4 cut(s)	221, 243, 441, 462
HapII	CCGG	3 cut(s)	442, 533, 545
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	112, 220, 511, 650
HinfI	GANTC	6 cut(s)	326, 587, 623, 640, 674, 689
HpaII	CCGG	3 cut(s)	442, 533, 545
HphI	GGTGA	5 cut(s)	265, 292, 377, 534, 593
Hpy166II	GTNNAC	2 cut(s)	169, 361
Hpy188I	TCNGA	5 cut(s)	370, 414, 556, 622, 685
Hpy188III	TCNNGA	2 cut(s)	323, 647
Hpy8I	GTNNAC	2 cut(s)	169, 361
Hpy99I	CGWCG	3 cut(s)	437, 440, 479
HpyAV	CCTTC	2 cut(s)	280, 286
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	4 cut(s)	165, 393, 435, 474
HpyCH4V	TGCA	3 cut(s)	483, 499, 593
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 249, 438, 465, 522, 599
HpyF3I	CTNAG	4 cut(s)	184, 413, 570, 737
HpySE526I	ACGT	4 cut(s)	165, 393, 435, 474
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	112, 220, 511, 650
Ksp22I	TGATCA	1 cut(s)	556
KspI	CCGCGG	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	556, 708
LmnI	GCTCC	4 cut(s)	218, 376, 444, 535
Lsp1109I	GCAGC	3 cut(s)	103, 500, 605
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	4 cut(s)	165, 393, 435, 474
MalI	GATC	2 cut(s)	558, 710
MboI	GATC	2 cut(s)	556, 708
MboII	GAAGA	7 cut(s)	79, 139, 383, 671, 684, 690, 739
MhlI	GDGCHC	2 cut(s)	419, 532
MlyI	GAGTC	1 cut(s)	320
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	3 cut(s)	488, 648, 651
MspA1I	CMGCKG	2 cut(s)	210, 596
MspI	CCGG	3 cut(s)	442, 533, 545
Mva1269I	GAATGC	2 cut(s)	499, 738
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	6 cut(s)	210, 249, 438, 465, 522, 599
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	2 cut(s)	556, 708
NlaIII	CATG	4 cut(s)	112, 220, 511, 650
NlaIV	GGNNCC	2 cut(s)	214, 244
NmeAIII	GCCGAG	2 cut(s)	219, 551
PagI	TCATGA	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	2 cut(s)	499, 738
PfeI	GAWTC	5 cut(s)	587, 623, 640, 674, 689
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	7 cut(s)	118, 206, 209, 212, 461, 515, 595
PleI	GAGTC	1 cut(s)	320
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	532
PspCI	CACGTG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	214, 244
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	595
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	3 cut(s)	488, 648, 651
SacI	GAGCTC	1 cut(s)	532
SacII	CCGCGG	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	7 cut(s)	117, 205, 208, 211, 460, 514, 594
Sau3AI	GATC	2 cut(s)	556, 708
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	320
SduI	GDGCHC	2 cut(s)	419, 532
SfaNI	GCATC	1 cut(s)	492
SfcI	CTRYAG	1 cut(s)	591
Sfr303I	CCGCGG	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	211
SmiMI	CAYNNNNRTG	3 cut(s)	488, 648, 651
SmlI	CTYRAG	2 cut(s)	65, 189
SmoI	CTYRAG	2 cut(s)	65, 189
SpeI	ACTAGT	1 cut(s)	665
SsiI	CCGC	8 cut(s)	202, 205, 208, 210, 229, 250, 459, 596
SspMI	CTAG	1 cut(s)	666
SstI	GAGCTC	1 cut(s)	532
StyI	CCWWGG	3 cut(s)	120, 216, 315
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	4 cut(s)	168, 396, 438, 477
TaqI	TCGA	3 cut(s)	279, 477, 486
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	4 cut(s)	207, 210, 213, 462
TfiI	GAWTC	5 cut(s)	587, 623, 640, 674, 689
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	3 cut(s)	116, 513, 593
TspDTI	ATGAA	1 cut(s)	702
TspRI	CASTG	1 cut(s)	470
Van91I	CCANNNNNTGG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	666
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.