Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016809

Physical Location & Seq

Genomic Coordinates Forward (+)

76162409 .. 76165972

Gene Structure 3564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTTCAGCTTCAACCCCACAGAGACCCCAAACCAAAACACCACCACCACCACCAACCCTCTCAAGCACCTCTTTGACACCATCTTCTCCTACAACGGCAATGTCATGCTCGCTGCCTTGGTCTCCCTCCTCCTCGTCATTCTCTTCGTCCTCCTCCTCCACGTCTACGCCAAATGGTTCTTAGCTCAAGCCCACCACCGCCGCCGCGGCTCCATGGCAGTCTCCCGCCGCGTCCTCGGCCCCAACCGCTTCCAGCATTTCCACACCTTCACCTTCGACCCGACTACCAACAATCTCACCACCAATACTCCCAAGGGTCTTGACTCCTCCACAATCGCCACCATTCCTTTGTTTGTGTACAAATCTGAAGAGGAGCATTTTCACCAGCACCTTGAGTGTGTTATTTGTCTGAGCCCTTTTGAGGACGACGACGTCGGCCGGAGCTTGCCCAAATGCGGCCACTGCTTTCACGTCGAGTGCATCGATATGTGGTTGCATTCGCACATGAGCTGCCCGATTTGCCGAGCTCCGGTAGTCGCACTGGCACAGTCTGATCAGGCCAAACCTGAGGTGGTGGGTGAGGAATCTGCAGCGGAAGCAGTAGTTATTGAAGTTTCGGATTCTGGGTATGTTGAGAATCATCATGATGATGTTGAAGAAACTAGTGCTGATTCCTTATCGGATGAATCTTCGTCTTCGCCATTGATGGTGGGTTGTTCGTTGAAGAGAATGCTGAGCAGGAATAGACCAGAAAGCAAGGTGTTCCCATCTACAAATGGGAATGATGTAAGACGCATAAATGGCAGAGGTCAGGAGATTTTGTCGAAGCCGGTTTTGGATAGAGGCGATGCTAACAAGTATCTATCGAGATTAGGCTTCCACTCGTTTGTTCTTCTCTCCGAAAACCGTTGGTCCACTACTCCACACCAATCGCCGAGGCTCGGATCCTGGAAATCTTCGGATTCTGATGAGTTCCCGGAGTTGTGCGGAGCTAACAACACCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

336

Amino Acids

37.46

Weight (kDa)

5.91

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	132 - 175	6.3e-13	Ring finger domain
zf-RING_11	PF17123	132 - 161	9.3e-09	RING-like zinc finger
zf-rbx1	PF12678	132 - 175	1.2e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016809)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39090
malus_domestica	MD03G1064500.v1.1 MD11G1068600.v1.1
prunus_persica	Prupe.6G053700_v2.0.a1
pyrus_communis	pycom03g05180
rosa_chinensis	RchiOBHm_Chr5g0070411
rosa_laevigata	RLG00000036131
rosa_multiflora	Rmu_sc0007961.1_g000012
rosa_roxburghii	Rroxscaffold_1G00010790
rosa_rugosa	Rorug05G0405800
rosa_samantha	Rh5BG479500 Rh5CG503700 Rh5DG491500
rosa_wichuraiana	Rw5G042990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
AatII	GACGTC	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	2 cut(s)	207, 231
AclWI	GGATC	2 cut(s)	939, 952
AcoI	YGGCCR	2 cut(s)	436, 457
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	4 cut(s)	421, 455, 529, 941
AgsI	TTSAA	4 cut(s)	13, 611, 656, 724
AhlI	ACTAGT	1 cut(s)	662
AjiI	CACGTC	2 cut(s)	163, 472
AjnI	CCWGG	1 cut(s)	947
AjuI	GAANNNNNNNTTGG	2 cut(s)	818, 850
AluBI	AGCT	6 cut(s)	9, 185, 444, 510, 527, 992
AluI	AGCT	6 cut(s)	9, 185, 444, 510, 527, 992
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	3 cut(s)	17, 127, 226
AlwI	GGATC	2 cut(s)	939, 952
AoxI	GGCC	4 cut(s)	238, 436, 457, 558
ApeKI	GCWGC	3 cut(s)	113, 510, 590
AspS9I	GGNCC	2 cut(s)	239, 912
AsuC2I	CCSGG	1 cut(s)	977
AsuHPI	GGTGA	4 cut(s)	262, 289, 374, 590
AvaII	GGWCC	1 cut(s)	912
AxyI	CCTNAGG	1 cut(s)	567
BamHI	GGATCC	1 cut(s)	944
BanII	GRGCYC	2 cut(s)	416, 529
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	3 cut(s)	100, 497, 602
BccI	CCATC	3 cut(s)	89, 700, 775
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	949
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	977
BcoDI	GTCTC	3 cut(s)	17, 127, 226
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	1 cut(s)	588
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
BlpI	GCTNAGC	1 cut(s)	734
BlsI	GCNGC	8 cut(s)	115, 203, 206, 209, 230, 458, 512, 592
Bme1390I	CCNGG	2 cut(s)	949, 977
Bme18I	GGWCC	1 cut(s)	912
BmgBI	CACGTC	2 cut(s)	163, 472
BmgT120I	GGNCC	2 cut(s)	239, 912
BmiI	GGNNCC	3 cut(s)	211, 241, 946
BmrFI	CCNGG	2 cut(s)	949, 977
BmsI	GCATC	2 cut(s)	489, 838
BpiI	GAAGAC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	3 cut(s)	47, 171, 413
BpuMI	CCSGG	1 cut(s)	977
Bsa29I	ATCGAT	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	432
BsaI	GGTCTC	2 cut(s)	17, 127
BsaJI	CCNNGG	6 cut(s)	117, 205, 213, 235, 312, 935
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	292, 322, 806, 836
Bsc4I	CCNNNNNNNGG	4 cut(s)	421, 455, 529, 941
Bse118I	RCCGGY	1 cut(s)	829
Bse1I	ACTGG	1 cut(s)	546
Bse21I	CCTNAGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	949
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	6 cut(s)	117, 205, 213, 235, 312, 935
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	4 cut(s)	421, 455, 529, 941
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	401, 558, 725
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	6 cut(s)	119, 122, 143, 146, 316, 386
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	3 cut(s)	100, 497, 602
Bsh1236I	CGCG	2 cut(s)	207, 231
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	4 cut(s)	240, 438, 459, 560
BshVI	ATCGAT	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	4 cut(s)	439, 530, 830, 977
BslI	CCNNNNNNNGG	4 cut(s)	421, 455, 529, 941
BsmAI	GTCTC	3 cut(s)	17, 127, 226
BsmI	GAATGC	2 cut(s)	496, 735
BsnI	GGCC	4 cut(s)	240, 438, 459, 560
Bso31I	GGTCTC	2 cut(s)	17, 127
Bsp1286I	GDGCHC	2 cut(s)	416, 529
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	553, 944
Bsp1720I	GCTNAGC	1 cut(s)	734
Bsp19I	CCATGG	1 cut(s)	213
BspANI	GGCC	4 cut(s)	240, 438, 459, 560
BspCNI	CTCAG	3 cut(s)	402, 559, 726
BspDI	ATCGAT	1 cut(s)	483
BspFNI	CGCG	2 cut(s)	207, 231
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	211, 241, 946
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	2 cut(s)	939, 952
BspTNI	GGTCTC	2 cut(s)	17, 127
BsrDI	GCAATG	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	829
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	1 cut(s)	829
BssECI	CCNNGG	6 cut(s)	117, 205, 213, 235, 312, 935
BssMI	GATC	2 cut(s)	553, 944
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	3 cut(s)	117, 213, 312
Bst2UI	CCWGG	1 cut(s)	949
Bst4CI	ACNGT	2 cut(s)	549, 908
Bst6I	CTCTTC	3 cut(s)	149, 363, 719
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	111, 446
BstDEI	CTNAG	4 cut(s)	181, 410, 567, 734
BstDSI	CCRYGG	2 cut(s)	205, 213
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	2 cut(s)	207, 231
BstKTI	GATC	2 cut(s)	556, 947
BstMAI	GTCTC	3 cut(s)	17, 127, 226
BstMBI	GATC	2 cut(s)	553, 944
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	7 cut(s)	207, 237, 246, 462, 519, 596, 801
BstNI	CCWGG	1 cut(s)	949
BstSCI	CCNGG	2 cut(s)	947, 975
BstSFI	CTRYAG	1 cut(s)	588
BstUI	CGCG	2 cut(s)	207, 231
BstV1I	GCAGC	3 cut(s)	100, 497, 602
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	944
BstYI	RGATCY	1 cut(s)	944
BstZI	CGGCCG	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	567
BsuRI	GGCC	4 cut(s)	240, 438, 459, 560
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	205, 213
BtgZI	GCGATG	1 cut(s)	861
BtrI	CACGTC	2 cut(s)	163, 472
BtsCI	GGATG	1 cut(s)	688
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	460, 539
Cac8I	GCNNGC	2 cut(s)	111, 446
CciI	TCATGA	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	829
Cfr13I	GGNCC	2 cut(s)	239, 912
Cfr42I	CCGCGG	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	2 cut(s)	220, 801
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	4 cut(s)	106, 214, 505, 644
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	4 cut(s)	181, 410, 567, 734
DpnI	GATC	2 cut(s)	555, 946
DpnII	GATC	2 cut(s)	553, 944
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	2 cut(s)	436, 457
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	3 cut(s)	149, 363, 719
EarI	CTCTTC	3 cut(s)	149, 363, 719
Ecl136II	GAGCTC	1 cut(s)	527
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	3 cut(s)	117, 213, 312
Eco24I	GRGCYC	2 cut(s)	416, 529
Eco31I	GGTCTC	2 cut(s)	17, 127
Eco47I	GGWCC	1 cut(s)	912
Eco52I	CGGCCG	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	527
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	947
EcoT14I	CCWWGG	3 cut(s)	117, 213, 312
EcoT38I	GRGCYC	2 cut(s)	416, 529
ErhI	CCWWGG	3 cut(s)	117, 213, 312
FaeI	CATG	4 cut(s)	109, 217, 508, 647
FaiI	YATR	7 cut(s)	107, 215, 488, 506, 630, 645, 797
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	4 cut(s)	105, 213, 504, 643
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
FokI	GGATG	1 cut(s)	695
FriOI	GRGCYC	2 cut(s)	416, 529
Fsp4HI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
HaeIII	GGCC	4 cut(s)	240, 438, 459, 560
HapII	CCGG	4 cut(s)	439, 530, 830, 977
HgaI	GACGC	2 cut(s)	220, 801
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	109, 217, 508, 647
HinfI	GANTC	7 cut(s)	323, 584, 620, 637, 671, 686, 962
HpaII	CCGG	4 cut(s)	439, 530, 830, 977
HphI	GGTGA	4 cut(s)	262, 289, 374, 590
Hpy166II	GTNNAC	3 cut(s)	166, 358, 915
Hpy188I	TCNGA	9 cut(s)	367, 411, 553, 619, 682, 901, 944, 961, 967
Hpy188III	TCNNGA	4 cut(s)	320, 644, 812, 867
Hpy8I	GTNNAC	3 cut(s)	166, 358, 915
Hpy99I	CGWCG	4 cut(s)	431, 434, 437, 476
HpyAV	CCTTC	2 cut(s)	277, 283
HpyCH4III	ACNGT	2 cut(s)	549, 908
HpyCH4IV	ACGT	3 cut(s)	162, 432, 471
HpyCH4V	TGCA	3 cut(s)	480, 496, 590
HpyF10VI	GCNNNNNNNGC	7 cut(s)	207, 237, 246, 462, 519, 596, 801
HpyF3I	CTNAG	4 cut(s)	181, 410, 567, 734
HpySE526I	ACGT	3 cut(s)	162, 432, 471
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	4 cut(s)	109, 217, 508, 647
Ksp22I	TGATCA	1 cut(s)	553
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	553, 944
LmnI	GCTCC	5 cut(s)	215, 373, 441, 532, 989
Lsp1109I	GCAGC	3 cut(s)	100, 497, 602
LweI	GCATC	2 cut(s)	489, 838
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	3 cut(s)	162, 432, 471
MalI	GATC	2 cut(s)	555, 946
MboI	GATC	2 cut(s)	553, 944
MboII	GAAGA	9 cut(s)	76, 136, 380, 668, 681, 687, 736, 884, 948
MflI	RGATCY	1 cut(s)	944
MhlI	GDGCHC	2 cut(s)	416, 529
MlyI	GAGTC	1 cut(s)	317
MslI	CAYNNNNRTG	3 cut(s)	485, 645, 648
MspA1I	CMGCKG	2 cut(s)	207, 593
MspI	CCGG	4 cut(s)	439, 530, 830, 977
MspR9I	CCNGG	2 cut(s)	949, 977
Mva1269I	GAATGC	2 cut(s)	496, 735
MvaI	CCWGG	1 cut(s)	949
MvnI	CGCG	2 cut(s)	207, 231
MwoI	GCNNNNNNNGC	7 cut(s)	207, 237, 246, 462, 519, 596, 801
NciI	CCSGG	1 cut(s)	977
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	553, 944
NlaIII	CATG	4 cut(s)	109, 217, 508, 647
NlaIV	GGNNCC	3 cut(s)	211, 241, 946
NmeAIII	GCCGAG	3 cut(s)	216, 548, 960
PagI	TCATGA	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PctI	GAATGC	2 cut(s)	496, 735
PfeI	GAWTC	6 cut(s)	584, 620, 637, 671, 686, 962
PflFI	GACNNNGTC	1 cut(s)	431
PfoI	TCCNGGA	2 cut(s)	947, 975
PkrI	GCNGC	8 cut(s)	115, 203, 206, 209, 230, 458, 512, 592
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	947
PspN4I	GGNNCC	3 cut(s)	211, 241, 946
PspPI	GGNCC	2 cut(s)	239, 912
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	944
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	3 cut(s)	485, 645, 648
SacI	GAGCTC	1 cut(s)	529
SacII	CCGCGG	1 cut(s)	208
SatI	GCNGC	8 cut(s)	114, 202, 205, 208, 229, 457, 511, 591
Sau3AI	GATC	2 cut(s)	553, 944
Sau96I	GGNCC	2 cut(s)	239, 912
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	949, 977
SduI	GDGCHC	2 cut(s)	416, 529
SfaNI	GCATC	2 cut(s)	489, 838
SfcI	CTRYAG	1 cut(s)	588
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	912
SmiMI	CAYNNNNRTG	3 cut(s)	485, 645, 648
SmlI	CTYRAG	3 cut(s)	62, 186, 392
SmoI	CTYRAG	3 cut(s)	62, 186, 392
SpeI	ACTAGT	1 cut(s)	662
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	947, 975
StyI	CCWWGG	3 cut(s)	117, 213, 312
TaaI	ACNGT	2 cut(s)	549, 908
TaiI	ACGT	3 cut(s)	165, 435, 474
TaqI	TCGA	5 cut(s)	276, 474, 483, 824, 866
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	5 cut(s)	204, 207, 210, 231, 459
TfiI	GAWTC	6 cut(s)	584, 620, 637, 671, 686, 962
TscAI	CASTG	2 cut(s)	467, 546
TseI	GCWGC	3 cut(s)	113, 510, 590
TspDTI	ATGAA	1 cut(s)	699
TspRI	CASTG	2 cut(s)	467, 546
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	912
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	663
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.