Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010510

Physical Location & Seq

Genomic Coordinates Reverse (-)

33683239 .. 33686690

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39710.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCTTCCCTTTGTCTCAACTCATTGCCTCTGCCTCCATCTTCTCAGCCTCGCAAGCTATTAGAGACTCCTTCTCCTTCTTCACTGAACAGTTATGGCAAAGCAGAGGCCTCCAAGCCCATAGTCGTCAGTGGAAACCCACCCACTTTTGTCTCTGCTCCCGGTCGCCGGATTGTCGCCGTTGGGGATCTACATGGAGACCTTTATCAAACAAGATGTGCACTTGAGATGGCTGGTGTGTTGAGTTCAGATGGTGAAGACTTGTGGACAGGTGGAGAAACGGTATTAGTTCAGCTTGGAGATATACTTGATCGAGGTGAGGATGAAATTGCCATTTTGTCATTGCTGCGATCCTTGGATATCCAGGCAAAGGCTGAAGGTGGAGCAGTTTTTCAGGTTAATGGAAATCATGAAAGCATGAACGTGGAGGGGGACTTTCGATTTGTAGACGATGGTGGATTTGATGAGTGTCTTGATTTCTTGGAATACTTTGATGACTGTAGAGATGACTGGGAAGAAGCTTTTGTTGACTGGATTGGTGTCTCTCAAAAGTTAAAAGTAGATAGGAAAATGCCGCAAAATTATTGGGATCCATGGAATCTAGTGAGGAGGCAAAAGGGTGTGATTGCCAGATCAATCCTTCTAAGACCAGGCGGTCCATTGGCGTGTGAATTAGCACGACATCCTGTTGTTCTGAAGGTCAATGACTGGCTCTTCTGTCATGGTGGTCTTGTTCCTCACCATGTTGCATATGGAGTTGAGAGGATGAATAGGGAAGTATCTCAATGGATGAGAGGCCTCAGTGAGAGTGAGGATGATCCTGACATCCCTTTCATAGCCACAAGGGGATATGACAGTGTAGTTTGGAATCGTTTGTACTCGAGAGATAACTCAGAGTTCGATGACTACCAGAGTAACCAGATACACTCTATTCTTGAAAGGACACTACATGCAGCTGGTGCCAAGGCAATGGTAGTCGGTCATACTCCTCAAACTGCAGGAGTAAACTGTAAATACAATTGTAGCATATGGCGGATTGATGTTGGGATGTCACGTGGAGTTCTTAATTCAAGACCAGAGGTTCTAGAAATAAGAGGTGATAAAGCAAGAGTTATCAGACGTAAGAGGGATAGCTTCAGTGAACTCAATGTTGTGGATTATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030145 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

389

Amino Acids

43.36

Weight (kDa)

5.16

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07010 AT1G07010 AT1G07010
fragaria_vesca	FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710
malus_domestica	MD11G1056900.v1.1
prunus_persica	Prupe.6G048800_v2.0.a1
pyrus_communis	pycom11g04790
rosa_chinensis	RchiOBHm_Chr5g0071581
rosa_laevigata	RLG00000036227
rosa_multiflora	Rmu_sc0005745.1_g000010
rosa_roxburghii	Rroxscaffold_1G00009590
rosa_rugosa	Rorug05G0413400
rosa_samantha	Rh5AG469300 Rh5BG488500 Rh5CG512500 Rh5DG499300
rosa_wichuraiana	Rw5G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	959
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	3 cut(s)	575, 654, 1033
AclWI	GGATC	5 cut(s)	195, 345, 584, 597, 812
AcuI	CTGAAG	3 cut(s)	396, 716, 1120
AcvI	CACGTG	1 cut(s)	1055
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	2 cut(s)	168, 370
AgsI	TTSAA	2 cut(s)	938, 1071
AjnI	CCWGG	2 cut(s)	363, 649
AluBI	AGCT	5 cut(s)	58, 295, 521, 956, 1134
AluI	AGCT	5 cut(s)	58, 295, 521, 956, 1134
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	5 cut(s)	20, 59, 157, 192, 547
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	5 cut(s)	195, 345, 584, 597, 812
Ama87I	CYCGRG	1 cut(s)	880
AoxI	GGCC	2 cut(s)	108, 796
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	346, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	4 cut(s)	266, 329, 731, 1109
AvaI	CYCGRG	1 cut(s)	880
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	959
BbrPI	CACGTG	1 cut(s)	1055
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	333, 965
BccI	CCATC	4 cut(s)	46, 223, 245, 446
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	365, 651
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	5 cut(s)	20, 59, 157, 192, 547
BfaI	CTAG	2 cut(s)	602, 1085
BfmI	CTRYAG	3 cut(s)	499, 996, 1163
BisI	GCNGC	3 cut(s)	347, 575, 954
BlsI	GCNGC	3 cut(s)	348, 576, 955
Bme1390I	CCNGG	3 cut(s)	162, 365, 651
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	880
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	2 cut(s)	591, 961
BmrFI	CCNGG	3 cut(s)	162, 365, 651
BmrI	ACTGGG	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	1055
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	354, 593, 963
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 267, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 370
Bse1I	ACTGG	3 cut(s)	515, 536, 713
Bse3DI	GCAATG	3 cut(s)	23, 341, 975
BseBI	CCWGG	2 cut(s)	365, 651
BseDI	CCNNGG	3 cut(s)	354, 593, 963
BseGI	GGATG	7 cut(s)	328, 682, 771, 795, 820, 825, 1053
BseLI	CCNNNNNNNGG	2 cut(s)	168, 370
BseMI	GCAATG	3 cut(s)	23, 341, 975
BseMII	CTCAG	3 cut(s)	59, 814, 906
BseNI	ACTGG	3 cut(s)	515, 536, 713
BseRI	GAGGAG	2 cut(s)	622, 978
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	333, 965
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	110, 798
BshNI	GGYRCC	1 cut(s)	959
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	880
BsiSI	CCGG	2 cut(s)	162, 169
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	168, 370
BsmAI	GTCTC	5 cut(s)	20, 59, 157, 192, 547
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	110, 798
Bso31I	GGTCTC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	880
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	6 cut(s)	187, 310, 350, 589, 632, 817
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	3 cut(s)	575, 654, 1033
BspANI	GGCC	2 cut(s)	110, 798
BspCNI	CTCAG	3 cut(s)	58, 813, 905
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	591, 961
BspMAI	CTGCAG	1 cut(s)	1000
BspPI	GGATC	5 cut(s)	195, 345, 584, 597, 812
BspQI	GCTCTTC	1 cut(s)	719
BspT107I	GGYRCC	1 cut(s)	959
BspTNI	GGTCTC	1 cut(s)	192
BsrDI	GCAATG	3 cut(s)	23, 341, 975
BsrI	ACTGG	3 cut(s)	515, 536, 713
BssECI	CCNNGG	3 cut(s)	354, 593, 963
BssMI	GATC	6 cut(s)	187, 310, 350, 589, 632, 817
BssT1I	CCWWGG	3 cut(s)	354, 593, 963
Bst2UI	CCWGG	2 cut(s)	365, 651
Bst4CI	ACNGT	5 cut(s)	92, 283, 500, 857, 1010
Bst6I	CTCTTC	1 cut(s)	719
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstBAI	YACGTR	1 cut(s)	1055
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	4 cut(s)	45, 644, 800, 892
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	7 cut(s)	328, 682, 771, 795, 820, 825, 1053
BstKTI	GATC	6 cut(s)	190, 313, 353, 592, 635, 820
BstMAI	GTCTC	5 cut(s)	20, 59, 157, 192, 547
BstMBI	GATC	6 cut(s)	187, 310, 350, 589, 632, 817
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 959
BstNI	CCWGG	2 cut(s)	365, 651
BstNSI	RCATGY	1 cut(s)	953
BstSCI	CCNGG	3 cut(s)	160, 363, 649
BstSFI	CTRYAG	3 cut(s)	499, 996, 1163
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	333, 965
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	2 cut(s)	187, 589
BstXI	CCANNNNNNTGG	1 cut(s)	970
BstYI	RGATCY	2 cut(s)	187, 589
BsuRI	GGCC	2 cut(s)	110, 798
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	7 cut(s)	328, 682, 771, 795, 820, 825, 1053
BtsIMutI	CAGTG	5 cut(s)	83, 136, 808, 862, 1144
Cac8I	GCNNGC	1 cut(s)	56
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	877
CviAII	CATG	7 cut(s)	194, 410, 418, 594, 722, 743, 950
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	4 cut(s)	45, 644, 800, 892
DpnI	GATC	6 cut(s)	189, 312, 352, 591, 634, 819
DpnII	GATC	6 cut(s)	187, 310, 350, 589, 632, 817
DrdI	GACNNNNNNGTC	1 cut(s)	654
DseDI	GACNNNNNNGTC	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
EciI	GGCGGA	1 cut(s)	1048
Eco130I	CCWWGG	3 cut(s)	354, 593, 963
Eco147I	AGGCCT	2 cut(s)	110, 798
Eco31I	GGTCTC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	3 cut(s)	396, 716, 1120
Eco72I	CACGTG	1 cut(s)	1055
Eco88I	CYCGRG	1 cut(s)	880
EcoRII	CCWGG	2 cut(s)	363, 649
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	3 cut(s)	354, 593, 963
ErhI	CCWWGG	3 cut(s)	354, 593, 963
FaeI	CATG	7 cut(s)	197, 413, 421, 597, 725, 746, 953
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	7 cut(s)	193, 409, 417, 593, 721, 742, 949
FauNDI	CATATG	2 cut(s)	751, 1028
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	347, 575, 954
FokI	GGATG	7 cut(s)	335, 669, 778, 802, 812, 827, 1060
Fsp4HI	GCNGC	3 cut(s)	347, 575, 954
FspBI	CTAG	2 cut(s)	602, 1085
GluI	GCNGC	3 cut(s)	347, 575, 954
HaeIII	GGCC	2 cut(s)	110, 798
HapII	CCGG	2 cut(s)	162, 169
Hin1II	CATG	7 cut(s)	197, 413, 421, 597, 725, 746, 953
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	3 cut(s)	67, 598, 868
HpaII	CCGG	2 cut(s)	162, 169
HphI	GGTGA	4 cut(s)	266, 329, 731, 1109
Hpy166II	GTNNAC	6 cut(s)	221, 267, 448, 529, 1006, 1142
Hpy188I	TCNGA	4 cut(s)	250, 696, 895, 1118
Hpy188III	TCNNGA	7 cut(s)	410, 473, 821, 882, 935, 1071, 1085
Hpy8I	GTNNAC	6 cut(s)	221, 267, 448, 529, 1006, 1142
HpyAV	CCTTC	5 cut(s)	81, 87, 371, 650, 691
HpyCH4III	ACNGT	5 cut(s)	92, 283, 500, 857, 1010
HpyCH4IV	ACGT	3 cut(s)	423, 1054, 1120
HpyCH4V	TGCA	4 cut(s)	221, 749, 953, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 959
HpyF3I	CTNAG	4 cut(s)	45, 644, 800, 892
HpySE526I	ACGT	3 cut(s)	423, 1054, 1120
Hsp92II	CATG	7 cut(s)	197, 413, 421, 597, 725, 746, 953
Kzo9I	GATC	6 cut(s)	187, 310, 350, 589, 632, 817
LguI	GCTCTTC	1 cut(s)	719
LmnI	GCTCC	2 cut(s)	163, 383
Lsp1109I	GCAGC	2 cut(s)	333, 965
MaeI	CTAG	2 cut(s)	602, 1085
MaeII	ACGT	3 cut(s)	423, 1054, 1120
MaeIII	GTNAC	2 cut(s)	914, 1050
MalI	GATC	6 cut(s)	189, 312, 352, 591, 634, 819
MboI	GATC	6 cut(s)	187, 310, 350, 589, 632, 817
MboII	GAAGA	5 cut(s)	33, 72, 269, 527, 706
MfeI	CAATTG	1 cut(s)	1018
MflI	RGATCY	2 cut(s)	187, 589
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	5 cut(s)	327, 580, 671, 1018, 1066
MlyI	GAGTC	1 cut(s)	61
MseI	TTAA	3 cut(s)	399, 554, 1065
MslI	CAYNNNNRTG	2 cut(s)	422, 664
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	2 cut(s)	162, 169
MspR9I	CCNGG	3 cut(s)	162, 365, 651
MunI	CAATTG	1 cut(s)	1018
MvaI	CCWGG	2 cut(s)	365, 651
MwoI	GCNNNNNNNGC	2 cut(s)	55, 959
NciI	CCSGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	593
NdeI	CATATG	2 cut(s)	751, 1028
NdeII	GATC	6 cut(s)	187, 310, 350, 589, 632, 817
NlaIII	CATG	7 cut(s)	197, 413, 421, 597, 725, 746, 953
NlaIV	GGNNCC	2 cut(s)	591, 961
NmuCI	GTSAC	1 cut(s)	1050
NspI	RCATGY	1 cut(s)	953
PaeR7I	CTCGAG	1 cut(s)	880
PagI	TCATGA	1 cut(s)	409
PceI	AGGCCT	2 cut(s)	110, 798
PciSI	GCTCTTC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	598, 868
PkrI	GCNGC	3 cut(s)	348, 576, 955
PleI	GAGTC	1 cut(s)	61
PmaCI	CACGTG	1 cut(s)	1055
PmlI	CACGTG	1 cut(s)	1055
PpsI	GAGTC	1 cut(s)	61
Ppu21I	YACGTR	1 cut(s)	1055
Psp6I	CCWGG	2 cut(s)	363, 649
PspCI	CACGTG	1 cut(s)	1055
PspGI	CCWGG	2 cut(s)	363, 649
PspN4I	GGNNCC	2 cut(s)	591, 961
PspPI	GGNCC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	1000
PsuI	RGATCY	2 cut(s)	187, 589
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	2 cut(s)	422, 664
SapI	GCTCTTC	1 cut(s)	719
SaqAI	TTAA	3 cut(s)	399, 554, 1065
SatI	GCNGC	3 cut(s)	347, 575, 954
Sau3AI	GATC	6 cut(s)	187, 310, 350, 589, 632, 817
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	162, 365, 651
SduI	GDGCHC	1 cut(s)	223
SfcI	CTRYAG	3 cut(s)	499, 996, 1163
Sfr274I	CTCGAG	1 cut(s)	880
SinI	GGWCC	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	880
SmiMI	CAYNNNNRTG	2 cut(s)	422, 664
SmlI	CTYRAG	2 cut(s)	224, 880
SmoI	CTYRAG	2 cut(s)	224, 880
Sse9I	AATT	5 cut(s)	327, 580, 671, 1018, 1066
SseBI	AGGCCT	2 cut(s)	110, 798
SsiI	CCGC	3 cut(s)	575, 654, 1033
SspMI	CTAG	2 cut(s)	602, 1085
StuI	AGGCCT	2 cut(s)	110, 798
StyD4I	CCNGG	3 cut(s)	160, 363, 649
StyI	CCWWGG	3 cut(s)	354, 593, 963
TaaI	ACNGT	5 cut(s)	92, 283, 500, 857, 1010
TaiI	ACGT	3 cut(s)	426, 1057, 1123
TaqI	TCGA	4 cut(s)	313, 439, 881, 900
TaqII	GACCGA	1 cut(s)	968
TasI	AATT	5 cut(s)	327, 580, 671, 1018, 1066
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	2 cut(s)	598, 868
Tru1I	TTAA	3 cut(s)	399, 554, 1065
Tru9I	TTAA	3 cut(s)	399, 554, 1065
TscAI	CASTG	5 cut(s)	90, 136, 808, 862, 1144
TseFI	GTSAC	1 cut(s)	1050
TseI	GCWGC	2 cut(s)	346, 953
Tsp45I	GTSAC	1 cut(s)	1050
TspDTI	ATGAA	5 cut(s)	339, 426, 434, 782, 823
TspRI	CASTG	5 cut(s)	90, 136, 808, 862, 1144
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	656
XbaI	TCTAGA	1 cut(s)	1084
XceI	RCATGY	1 cut(s)	953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XhoI	CTCGAG	1 cut(s)	880
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	2 cut(s)	602, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.