Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010510

Physical Location & Seq

Genomic Coordinates Reverse (-)

77630872 .. 77633886

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCTTCGCTTTGTCTCAACTCGTTGCCTCTGCCTCCACCTTCTCAGCCTCGCAAGCTCTTAGAGACTCCTTCTTCTTCATCTCCTTCTTCACTGAACAGTTATGGCAAAACAGAGGCCTCCAAGCCCATAGTCGTCAGTGGAAACCCACCCACTTTTGTTTCTGCTCCAGGTCGCCGAATTGTCGCCGTTGGGGATCTGCATGGAGACCTTGATCAAACAAGATGTGCACTTGAGATGGCTGGTGTGTTGAGTTCTGATGGTGAAGACTTGTGGACAGGCGGGGAAACGGTATTAGTTCAGCTTGGAGATATACTTGATCGAGGTGAGGATGAAATTGCCATTTTGTCATTGCTGCGATCCTTGGATATCCAGGCAAAAGCTGAAGGTGGAGCAGTTTTTCAGGTCAATGGAAATCATGAAAGCATGAATGTGGAGGGGGATTTTCGATTTGTGGATGCTGGAGGATTTGATGAGTGTATTGATTTCTTGGAATACTTGGATGACTGTAGAGATGACTGGGAAGAAGCTTTTGTTGACTGGATTGGTGTCTCTCAAAAGTTGAAAGAAGATAGGAAAATGCCCCAGAGTTATTGGGATCCATGGAATCTAGTGAGGAGGCAAAAGGGTGTGATTGCCAGATCAATCCTTCTAAGACCAGGCGGTCCATTGGCGTGTGAGTTAGCGCGACATGCTGTTGTTCTTAAGGTCAATGATTGGCTCTTTTGTCATGGTGGTCTTGTTCCTCACCACGTTGCATATGGCATAGAGAGAATGAATAAGGAAGTATCTCATTGGATGAGAGGCCTCAGTGAGAGTGAGGACGATCCTGACATCCCTTTCATAGCCACAAGGGGATATGACAGTGTAGTTTGGAATCGTTTGTACTCAAGAGATAACTCAGATTTCGATGACTACCAGAGTAACCAGATACACTCTATTCTTGAAAAGACACTACAAGCAGCTGGTGCTAAGGCAATGGTGGTAGGGCATACTCCTCAAACTGTAGGAGTAAACTGTAAATACAATTGTAGCATATGGCGGATTGACGTTGGGATGTCAAGTGGAGTTCTTAATTCAAGACCCGAGGTTCTAGAAATAAGAGGCGATAAAGCAAGAGTTATCAGAAGTGAGAGGGATAGCTTCAGTGAATTCAATGTTGTTGATTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030145 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

392

Amino Acids

43.38

Weight (kDa)

4.9

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	60 - 333	1.9e-07	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07010 AT1G07010 AT1G07010
fragaria_vesca	FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710
malus_domestica	MD11G1056900.v1.1
prunus_persica	Prupe.6G048800_v2.0.a1
pyrus_communis	pycom11g04790
rosa_chinensis	RchiOBHm_Chr5g0071581
rosa_laevigata	RLG00000036227
rosa_multiflora	Rmu_sc0005745.1_g000010
rosa_roxburghii	Rroxscaffold_1G00009590
rosa_rugosa	Rorug05G0413400
rosa_samantha	Rh5AG469300 Rh5BG488500 Rh5CG512500 Rh5DG499300
rosa_wichuraiana	Rw5G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	663
AccII	CGCG	1 cut(s)	688
AciI	CCGC	3 cut(s)	282, 663, 1042
AclWI	GGATC	5 cut(s)	204, 354, 593, 606, 821
AcsI	RAATTY	1 cut(s)	1151
AcuI	CTGAAG	2 cut(s)	405, 1129
AfaI	GTAC	1 cut(s)	887
AflII	CTTAAG	1 cut(s)	704
AgsI	TTSAA	4 cut(s)	565, 947, 1080, 1156
AjnI	CCWGG	3 cut(s)	169, 372, 658
AluBI	AGCT	6 cut(s)	58, 304, 383, 530, 965, 1143
AluI	AGCT	6 cut(s)	58, 304, 383, 530, 965, 1143
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	4 cut(s)	20, 59, 201, 556
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	5 cut(s)	204, 354, 593, 606, 821
Ama87I	CYCGRG	1 cut(s)	1085
AoxI	GGCC	2 cut(s)	117, 805
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	355, 962
ApoI	RAATTY	1 cut(s)	1151
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	275, 338, 740
AvaI	CYCGRG	1 cut(s)	1085
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	342, 974
BccI	CCATC	2 cut(s)	232, 254
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	3 cut(s)	171, 374, 660
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	4 cut(s)	20, 59, 201, 556
BfaI	CTAG	2 cut(s)	611, 1094
BfmI	CTRYAG	2 cut(s)	508, 1005
BfrI	CTTAAG	1 cut(s)	704
BisI	GCNGC	2 cut(s)	356, 963
BlsI	GCNGC	2 cut(s)	357, 964
Bme1390I	CCNGG	3 cut(s)	171, 374, 660
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	1 cut(s)	1085
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	3 cut(s)	171, 374, 660
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	2 cut(s)	153, 483
Bpu10I	CCTNAGC	1 cut(s)	972
BpuEI	CTTGAG	2 cut(s)	254, 874
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	363, 602, 1086
Bse1I	ACTGG	2 cut(s)	524, 545
Bse3DI	GCAATG	2 cut(s)	350, 984
BseBI	CCWGG	3 cut(s)	171, 374, 660
BseDI	CCNNGG	3 cut(s)	363, 602, 1086
BseGI	GGATG	6 cut(s)	337, 463, 508, 804, 834, 1062
BseMI	GCAATG	2 cut(s)	350, 984
BseMII	CTCAG	3 cut(s)	59, 823, 915
BseNI	ACTGG	2 cut(s)	524, 545
BseRI	GAGGAG	2 cut(s)	631, 987
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	342, 974
Bsh1236I	CGCG	1 cut(s)	688
BshFI	GGCC	2 cut(s)	119, 807
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	1085
BsmAI	GTCTC	4 cut(s)	20, 59, 201, 556
BsnI	GGCC	2 cut(s)	119, 807
Bso31I	GGTCTC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	1085
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	7 cut(s)	196, 214, 319, 359, 598, 641, 826
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	3 cut(s)	282, 663, 1042
BspANI	GGCC	2 cut(s)	119, 807
BspCNI	CTCAG	3 cut(s)	58, 822, 914
BspFNI	CGCG	1 cut(s)	688
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	5 cut(s)	204, 354, 593, 606, 821
BspTI	CTTAAG	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	2 cut(s)	350, 984
BsrI	ACTGG	2 cut(s)	524, 545
BssECI	CCNNGG	3 cut(s)	363, 602, 1086
BssMI	GATC	7 cut(s)	196, 214, 319, 359, 598, 641, 826
BssT1I	CCWWGG	2 cut(s)	363, 602
Bst2UI	CCWGG	3 cut(s)	171, 374, 660
Bst4CI	ACNGT	6 cut(s)	101, 292, 509, 866, 1006, 1019
BstAFI	CTTAAG	1 cut(s)	704
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	6 cut(s)	45, 61, 653, 809, 901, 972
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	6 cut(s)	337, 463, 508, 804, 834, 1062
BstFNI	CGCG	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	7 cut(s)	199, 217, 322, 362, 601, 644, 829
BstMAI	GTCTC	4 cut(s)	20, 59, 201, 556
BstMBI	GATC	7 cut(s)	196, 214, 319, 359, 598, 641, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 692, 968
BstNI	CCWGG	3 cut(s)	171, 374, 660
BstNSI	RCATGY	1 cut(s)	695
BstSCI	CCNGG	3 cut(s)	169, 372, 658
BstSFI	CTRYAG	2 cut(s)	508, 1005
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	2 cut(s)	342, 974
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	2 cut(s)	196, 598
BstYI	RGATCY	2 cut(s)	196, 598
BsuRI	GGCC	2 cut(s)	119, 807
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	6 cut(s)	337, 463, 508, 804, 834, 1062
BtsIMutI	CAGTG	5 cut(s)	92, 145, 817, 871, 1153
Cac8I	GCNNGC	1 cut(s)	56
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	665
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	6 cut(s)	203, 419, 427, 603, 692, 731
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	6 cut(s)	45, 61, 653, 809, 901, 972
DpnI	GATC	7 cut(s)	198, 216, 321, 361, 600, 643, 828
DpnII	GATC	7 cut(s)	196, 214, 319, 359, 598, 641, 826
DrdI	GACNNNNNNGTC	1 cut(s)	663
DseDI	GACNNNNNNGTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	1057
Eco130I	CCWWGG	2 cut(s)	363, 602
Eco147I	AGGCCT	2 cut(s)	119, 807
Eco31I	GGTCTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	405, 1129
Eco88I	CYCGRG	1 cut(s)	1085
EcoRI	GAATTC	1 cut(s)	1151
EcoRII	CCWGG	3 cut(s)	169, 372, 658
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	363, 602
ErhI	CCWWGG	2 cut(s)	363, 602
FaeI	CATG	6 cut(s)	206, 422, 430, 606, 695, 734
FatI	CATG	6 cut(s)	202, 418, 426, 602, 691, 730
FauI	CCCGC	1 cut(s)	275
FauNDI	CATATG	2 cut(s)	760, 1037
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	356, 963
FokI	GGATG	6 cut(s)	344, 470, 515, 811, 821, 1069
Fsp4HI	GCNGC	2 cut(s)	356, 963
FspBI	CTAG	2 cut(s)	611, 1094
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	2 cut(s)	356, 963
GsuI	CTGGAG	2 cut(s)	153, 483
HaeIII	GGCC	2 cut(s)	119, 807
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	6 cut(s)	206, 422, 430, 606, 695, 734
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	3 cut(s)	67, 607, 877
HphI	GGTGA	3 cut(s)	275, 338, 740
Hpy166II	GTNNAC	4 cut(s)	230, 276, 538, 1015
Hpy188I	TCNGA	3 cut(s)	259, 904, 1127
Hpy188III	TCNNGA	6 cut(s)	419, 830, 891, 944, 1080, 1094
Hpy8I	GTNNAC	4 cut(s)	230, 276, 538, 1015
HpyAV	CCTTC	5 cut(s)	51, 81, 96, 380, 659
HpyCH4III	ACNGT	6 cut(s)	101, 292, 509, 866, 1006, 1019
HpyCH4IV	ACGT	2 cut(s)	753, 1050
HpyCH4V	TGCA	3 cut(s)	202, 230, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 692, 968
HpyF3I	CTNAG	6 cut(s)	45, 61, 653, 809, 901, 972
HpySE526I	ACGT	2 cut(s)	753, 1050
Hsp92II	CATG	6 cut(s)	206, 422, 430, 606, 695, 734
HspAI	GCGC	1 cut(s)	686
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	7 cut(s)	196, 214, 319, 359, 598, 641, 826
LmnI	GCTCC	2 cut(s)	172, 392
Lsp1109I	GCAGC	2 cut(s)	342, 974
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	2 cut(s)	611, 1094
MaeII	ACGT	2 cut(s)	753, 1050
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	7 cut(s)	198, 216, 321, 361, 600, 643, 828
MboI	GATC	7 cut(s)	196, 214, 319, 359, 598, 641, 826
MboII	GAAGA	6 cut(s)	66, 69, 81, 278, 536, 581
MfeI	CAATTG	1 cut(s)	1027
MflI	RGATCY	2 cut(s)	196, 598
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	5 cut(s)	180, 336, 1027, 1075, 1151
MlyI	GAGTC	1 cut(s)	61
MseI	TTAA	2 cut(s)	705, 1074
MslI	CAYNNNNRTG	2 cut(s)	431, 673
MspA1I	CMGCKG	1 cut(s)	965
MspCI	CTTAAG	1 cut(s)	704
MspR9I	CCNGG	3 cut(s)	171, 374, 660
MunI	CAATTG	1 cut(s)	1027
MvaI	CCWGG	3 cut(s)	171, 374, 660
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	3 cut(s)	55, 692, 968
NcoI	CCATGG	1 cut(s)	602
NdeI	CATATG	2 cut(s)	760, 1037
NdeII	GATC	7 cut(s)	196, 214, 319, 359, 598, 641, 826
NlaIII	CATG	6 cut(s)	206, 422, 430, 606, 695, 734
NlaIV	GGNNCC	1 cut(s)	600
NspI	RCATGY	1 cut(s)	695
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	2 cut(s)	119, 807
PfeI	GAWTC	2 cut(s)	607, 877
PkrI	GCNGC	2 cut(s)	357, 964
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	3 cut(s)	169, 372, 658
PspGI	CCWGG	3 cut(s)	169, 372, 658
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	196, 598
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
RseI	CAYNNNNRTG	2 cut(s)	431, 673
SaqAI	TTAA	2 cut(s)	705, 1074
SatI	GCNGC	2 cut(s)	356, 963
Sau3AI	GATC	7 cut(s)	196, 214, 319, 359, 598, 641, 826
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	171, 374, 660
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	2 cut(s)	508, 1005
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	431, 673
SmlI	CTYRAG	3 cut(s)	233, 704, 889
SmoI	CTYRAG	3 cut(s)	233, 704, 889
Sse9I	AATT	5 cut(s)	180, 336, 1027, 1075, 1151
SseBI	AGGCCT	2 cut(s)	119, 807
SsiI	CCGC	3 cut(s)	282, 663, 1042
SspMI	CTAG	2 cut(s)	611, 1094
StuI	AGGCCT	2 cut(s)	119, 807
StyD4I	CCNGG	3 cut(s)	169, 372, 658
StyI	CCWWGG	2 cut(s)	363, 602
TaaI	ACNGT	6 cut(s)	101, 292, 509, 866, 1006, 1019
TaiI	ACGT	2 cut(s)	756, 1053
TaqI	TCGA	3 cut(s)	322, 448, 909
TasI	AATT	5 cut(s)	180, 336, 1027, 1075, 1151
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	2 cut(s)	607, 877
Tru1I	TTAA	2 cut(s)	705, 1074
Tru9I	TTAA	2 cut(s)	705, 1074
TscAI	CASTG	5 cut(s)	99, 145, 817, 871, 1153
TseI	GCWGC	2 cut(s)	355, 962
TspDTI	ATGAA	6 cut(s)	69, 348, 435, 443, 791, 832
TspRI	CASTG	5 cut(s)	99, 145, 817, 871, 1153
Vha464I	CTTAAG	1 cut(s)	704
VneI	GTGCAC	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	1151
XbaI	TCTAGA	1 cut(s)	1093
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	758
XspI	CTAG	2 cut(s)	611, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.