Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005745.1

Orthogroup ID

OG0010510

Physical Location & Seq

Genomic Coordinates Reverse (-)

43508 .. 46542

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005745.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atggcttcgctttgtctcaactcgttgcctctgcctccaccttctcagcctcgcaagctcttagagactcctccttctttttcttcttcatctccttcttcactgaacagttatggcaaaacagaggtctccaagcccatagtcgtcagtggaaacccacccacttttgtttctgctcccggtcgccgaattgtcgccgaccttgatcaaacaagatgtgcacttgagatggctggtgtgttgagttctgatggtgaagacttgtggacaggcggggaaacggtattagttcagcttggagatatacttgatcgaggtgaggatgaaattgccattttgtcattgctgcgatccttggatatccaggcaaaagctgaaggtggagcagtttttcaggtcaatggaaatcacgaaagcatgaatgtggagggggattttcgatttgtggacgctggaggatttgatgagtgtattgatttcttggaatacttggatgactgtagagatgactgggaagaagcttttgttgactggattggtgtctctcaaaagttgaaagaagataggaaaatgccccaaagttattgggatccatggaatctagtgaggaggcaaaagggtgtgattgccagatcaatccttctaagaccaggcggtccattggcgtgtgagttagcgcgacatgctgttgttcttaaggtcaatgattggctcttctgtcatggtggtcttgttcctcaccacgttgcatatggcatagagagaatgaataaggaagtatctcattggatgagaggcctcagtgagagtgaggacgatcctgacatccctttcatagccacaaggggatatgacagtgtagtttggaatcgtttgtactcgagagataactcagatttcgatgactaccagagtaaccagatacactctattcttgaaaagacactacaagcagctggtgctaaggcaatggttgtagggcatactcctcaaactgcaggagtaaactgtaaatacaattgtagcatatggcggattgacgttgggatgtcaagtggagttcttaattcaagaccggaggttctagaaataagaggcgataaagcaagagttatcagaagtcagagggatagcttcagtgaactcaatgttgttgattatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030145 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

388

Amino Acids

43.1

Weight (kDa)

4.93

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07010 AT1G07010 AT1G07010
fragaria_vesca	FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710
malus_domestica	MD11G1056900.v1.1
prunus_persica	Prupe.6G048800_v2.0.a1
pyrus_communis	pycom11g04790
rosa_chinensis	RchiOBHm_Chr5g0071581
rosa_laevigata	RLG00000036227
rosa_multiflora	Rmu_sc0005745.1_g000010
rosa_roxburghii	Rroxscaffold_1G00009590
rosa_rugosa	Rorug05G0413400
rosa_samantha	Rh5AG469300 Rh5BG488500 Rh5CG512500 Rh5DG499300
rosa_wichuraiana	Rw5G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	654
AccII	CGCG	1 cut(s)	679
AciI	CCGC	3 cut(s)	273, 654, 1033
AclWI	GGATC	4 cut(s)	345, 584, 597, 812
AcuI	CTGAAG	2 cut(s)	396, 1120
AfaI	GTAC	1 cut(s)	878
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	3 cut(s)	556, 938, 1071
AjnI	CCWGG	2 cut(s)	363, 649
AluBI	AGCT	6 cut(s)	58, 295, 374, 521, 956, 1134
AluI	AGCT	6 cut(s)	58, 295, 374, 521, 956, 1134
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	4 cut(s)	20, 59, 133, 547
Alw44I	GTGCAC	1 cut(s)	219
AlwI	GGATC	4 cut(s)	345, 584, 597, 812
Ama87I	CYCGRG	1 cut(s)	880
AoxI	GGCC	1 cut(s)	796
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	346, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	3 cut(s)	266, 329, 731
AvaI	CYCGRG	1 cut(s)	880
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	333, 965
BccI	CCATC	2 cut(s)	223, 245
BciT130I	CCWGG	2 cut(s)	365, 651
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	4 cut(s)	20, 59, 133, 547
BfaI	CTAG	2 cut(s)	602, 1085
BfmI	CTRYAG	2 cut(s)	499, 996
BfrI	CTTAAG	1 cut(s)	695
BisI	GCNGC	2 cut(s)	347, 954
BlsI	GCNGC	2 cut(s)	348, 955
Bme1390I	CCNGG	3 cut(s)	180, 365, 651
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	880
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	3 cut(s)	180, 365, 651
BmrI	ACTGGG	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	354, 593
BsaWI	WCCGGW	1 cut(s)	1075
Bse1I	ACTGG	2 cut(s)	515, 536
Bse3DI	GCAATG	2 cut(s)	341, 975
BseBI	CCWGG	2 cut(s)	365, 651
BseDI	CCNNGG	2 cut(s)	354, 593
BseGI	GGATG	5 cut(s)	328, 499, 795, 825, 1053
BseMI	GCAATG	2 cut(s)	341, 975
BseMII	CTCAG	3 cut(s)	59, 814, 906
BseNI	ACTGG	2 cut(s)	515, 536
BseRI	GAGGAG	3 cut(s)	60, 622, 978
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	333, 965
Bsh1236I	CGCG	1 cut(s)	679
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	798
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	880
BsiSI	CCGG	2 cut(s)	180, 1076
BsmAI	GTCTC	4 cut(s)	20, 59, 133, 547
BsnI	GGCC	1 cut(s)	798
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	880
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	6 cut(s)	205, 310, 350, 589, 632, 817
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	3 cut(s)	273, 654, 1033
BspANI	GGCC	1 cut(s)	798
BspCNI	CTCAG	3 cut(s)	58, 813, 905
BspFNI	CGCG	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	1000
BspPI	GGATC	4 cut(s)	345, 584, 597, 812
BspQI	GCTCTTC	1 cut(s)	719
BspTI	CTTAAG	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	341, 975
BsrI	ACTGG	2 cut(s)	515, 536
BssECI	CCNNGG	2 cut(s)	354, 593
BssMI	GATC	6 cut(s)	205, 310, 350, 589, 632, 817
BssT1I	CCWWGG	2 cut(s)	354, 593
Bst2UI	CCWGG	2 cut(s)	365, 651
Bst4CI	ACNGT	5 cut(s)	110, 283, 500, 857, 1010
Bst6I	CTCTTC	1 cut(s)	719
BstAFI	CTTAAG	1 cut(s)	695
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	6 cut(s)	45, 61, 644, 800, 892, 963
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	5 cut(s)	328, 499, 795, 825, 1053
BstFNI	CGCG	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	6 cut(s)	208, 313, 353, 592, 635, 820
BstMAI	GTCTC	4 cut(s)	20, 59, 133, 547
BstMBI	GATC	6 cut(s)	205, 310, 350, 589, 632, 817
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 683, 959
BstNI	CCWGG	2 cut(s)	365, 651
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	3 cut(s)	178, 363, 649
BstSFI	CTRYAG	2 cut(s)	499, 996
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	333, 965
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	798
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	5 cut(s)	328, 499, 795, 825, 1053
BtsIMutI	CAGTG	5 cut(s)	101, 154, 808, 862, 1144
Cac8I	GCNNGC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	877
CviAII	CATG	4 cut(s)	418, 594, 683, 722
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	6 cut(s)	45, 61, 644, 800, 892, 963
DpnI	GATC	6 cut(s)	207, 312, 352, 591, 634, 819
DpnII	GATC	6 cut(s)	205, 310, 350, 589, 632, 817
DrdI	GACNNNNNNGTC	1 cut(s)	654
DseDI	GACNNNNNNGTC	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
EciI	GGCGGA	1 cut(s)	1048
Eco130I	CCWWGG	2 cut(s)	354, 593
Eco147I	AGGCCT	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	396, 1120
Eco88I	CYCGRG	1 cut(s)	880
EcoRII	CCWGG	2 cut(s)	363, 649
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	354, 593
ErhI	CCWWGG	2 cut(s)	354, 593
FaeI	CATG	4 cut(s)	421, 597, 686, 725
FatI	CATG	4 cut(s)	417, 593, 682, 721
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	2 cut(s)	751, 1028
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	347, 954
FokI	GGATG	5 cut(s)	335, 506, 802, 812, 1060
Fsp4HI	GCNGC	2 cut(s)	347, 954
FspBI	CTAG	2 cut(s)	602, 1085
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	2 cut(s)	347, 954
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	798
HapII	CCGG	2 cut(s)	180, 1076
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	4 cut(s)	421, 597, 686, 725
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	3 cut(s)	67, 598, 868
HpaII	CCGG	2 cut(s)	180, 1076
HphI	GGTGA	3 cut(s)	266, 329, 731
Hpy166II	GTNNAC	6 cut(s)	221, 267, 448, 529, 1006, 1142
Hpy188I	TCNGA	4 cut(s)	250, 895, 1118, 1125
Hpy188III	TCNNGA	6 cut(s)	410, 821, 882, 935, 1071, 1085
Hpy8I	GTNNAC	6 cut(s)	221, 267, 448, 529, 1006, 1142
HpyAV	CCTTC	5 cut(s)	51, 84, 105, 371, 650
HpyCH4III	ACNGT	5 cut(s)	110, 283, 500, 857, 1010
HpyCH4IV	ACGT	2 cut(s)	744, 1041
HpyCH4V	TGCA	3 cut(s)	221, 749, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 683, 959
HpyF3I	CTNAG	6 cut(s)	45, 61, 644, 800, 892, 963
HpySE526I	ACGT	2 cut(s)	744, 1041
Hsp92II	CATG	4 cut(s)	421, 597, 686, 725
HspAI	GCGC	1 cut(s)	677
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	205, 310, 350, 589, 632, 817
LguI	GCTCTTC	1 cut(s)	719
LmnI	GCTCC	2 cut(s)	181, 383
Lsp1109I	GCAGC	2 cut(s)	333, 965
MaeI	CTAG	2 cut(s)	602, 1085
MaeII	ACGT	2 cut(s)	744, 1041
MaeIII	GTNAC	1 cut(s)	914
MalI	GATC	6 cut(s)	207, 312, 352, 591, 634, 819
MboI	GATC	6 cut(s)	205, 310, 350, 589, 632, 817
MboII	GAAGA	7 cut(s)	75, 78, 90, 269, 527, 572, 706
MfeI	CAATTG	1 cut(s)	1018
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	189, 327, 1018, 1066
MlyI	GAGTC	1 cut(s)	61
MseI	TTAA	2 cut(s)	696, 1065
MslI	CAYNNNNRTG	2 cut(s)	422, 664
MspA1I	CMGCKG	1 cut(s)	956
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	2 cut(s)	180, 1076
MspR9I	CCNGG	3 cut(s)	180, 365, 651
MunI	CAATTG	1 cut(s)	1018
MvaI	CCWGG	2 cut(s)	365, 651
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	3 cut(s)	55, 683, 959
NciI	CCSGG	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	593
NdeI	CATATG	2 cut(s)	751, 1028
NdeII	GATC	6 cut(s)	205, 310, 350, 589, 632, 817
NlaIII	CATG	4 cut(s)	421, 597, 686, 725
NlaIV	GGNNCC	1 cut(s)	591
NspI	RCATGY	1 cut(s)	686
PaeR7I	CTCGAG	1 cut(s)	880
PceI	AGGCCT	1 cut(s)	798
PciSI	GCTCTTC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	598, 868
PkrI	GCNGC	2 cut(s)	348, 955
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	363, 649
PspGI	CCWGG	2 cut(s)	363, 649
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	1000
PsuI	RGATCY	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	2 cut(s)	422, 664
SapI	GCTCTTC	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	696, 1065
SatI	GCNGC	2 cut(s)	347, 954
Sau3AI	GATC	6 cut(s)	205, 310, 350, 589, 632, 817
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	180, 365, 651
SduI	GDGCHC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	499, 996
Sfr274I	CTCGAG	1 cut(s)	880
SinI	GGWCC	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	880
SmiMI	CAYNNNNRTG	2 cut(s)	422, 664
SmlI	CTYRAG	3 cut(s)	224, 695, 880
SmoI	CTYRAG	3 cut(s)	224, 695, 880
Sse9I	AATT	4 cut(s)	189, 327, 1018, 1066
SseBI	AGGCCT	1 cut(s)	798
SsiI	CCGC	3 cut(s)	273, 654, 1033
SspMI	CTAG	2 cut(s)	602, 1085
StuI	AGGCCT	1 cut(s)	798
StyD4I	CCNGG	3 cut(s)	178, 363, 649
StyI	CCWWGG	2 cut(s)	354, 593
TaaI	ACNGT	5 cut(s)	110, 283, 500, 857, 1010
TaiI	ACGT	2 cut(s)	747, 1044
TaqI	TCGA	4 cut(s)	313, 439, 881, 900
TasI	AATT	4 cut(s)	189, 327, 1018, 1066
TatI	WGTACW	1 cut(s)	876
TfiI	GAWTC	2 cut(s)	598, 868
Tru1I	TTAA	2 cut(s)	696, 1065
Tru9I	TTAA	2 cut(s)	696, 1065
TscAI	CASTG	5 cut(s)	108, 154, 808, 862, 1144
TseI	GCWGC	2 cut(s)	346, 953
TspDTI	ATGAA	5 cut(s)	78, 339, 434, 782, 823
TspRI	CASTG	5 cut(s)	108, 154, 808, 862, 1144
Vha464I	CTTAAG	1 cut(s)	695
VneI	GTGCAC	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	656
XbaI	TCTAGA	1 cut(s)	1084
XceI	RCATGY	1 cut(s)	686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XhoI	CTCGAG	1 cut(s)	880
XspI	CTAG	2 cut(s)	602, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.