Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010510

Physical Location & Seq

Genomic Coordinates Reverse (-)

78277317 .. 78280069

Gene Structure 2753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG499300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCTTCGCTTTGTCTCAACTCGTTGCCTCTGCCTCCACCTTCTCAGCCTCGCAAGCTCTTAGAGACTCCTCCTTCTTTTTCTTCTTCAACTCCTTCTTCACTGAACAGTTATGGCAAAACAGAGGCCTCCAAGCCCATAGTCGTCAGTGGAAACCCACCCACTTTTGTTTCTGCTCCCGGTCGCCGAATTGTCGCCGTTGGGGATCTGCATGGAGACCTTGATCAAACAAGATGTGCACTTGAGATGGCTGGTGTGTTGAGTTCTGATGGTGAAGACTTGTGGACAGGCGGGGAAACGGTCAATGGAAATCATGAAAGCATGAATGTGGAGGGGGATTTTCGATTTGTGGATGCTGGAGGATTTGATGAGTGTATTGATTTCTTGGAATACTTGGATGACTGTAGAGATGACTGGGAAGAAGCTTTTGTTGACTGGATTGGTGTCTCTCAAAAGTTGAAAGAAGATAGGAAAATGCCCCAAAGTTATTGGGATCCATGGAATCTAGTGAGGAGGCAAAAGGGTGTGATTGCCAGATCAATCCTTCTAAGACCAGGCGGTCCATTGGCGTGTGAGTTAGCGCGTCATGCTGTTGTTCTTAAGGTCAATGACTGGCTCTTCTGTCATGGTGGTCTTGTTCCTCACCACATTGCATATGGCATAGAGAGAATGAATAAGGAAGTATCTCATTGGATGAGAGGACTCAGTGAGAGTGAGGACGATCCTGACATCCCTTTCATAGCCACAAGGGGATATGACAGTGTAGTTTGGAATCGTTTGTACTCGAGAGATAACTCAGATTTCGATGACTACCAGAGTAACCAGGCAATAAATACAATTGTAGCATATGGCGGATTGACGTTGGGATGTCAAGTGGAGTTCTTAATTCAAGACCAGAGGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030145 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

302

Amino Acids

33.75

Weight (kDa)

4.75

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07010 AT1G07010 AT1G07010
fragaria_vesca	FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710
malus_domestica	MD11G1056900.v1.1
prunus_persica	Prupe.6G048800_v2.0.a1
pyrus_communis	pycom11g04790
rosa_chinensis	RchiOBHm_Chr5g0071581
rosa_laevigata	RLG00000036227
rosa_multiflora	Rmu_sc0005745.1_g000010
rosa_roxburghii	Rroxscaffold_1G00009590
rosa_rugosa	Rorug05G0413400
rosa_samantha	Rh5AG469300 Rh5BG488500 Rh5CG512500 Rh5DG499300
rosa_wichuraiana	Rw5G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	558
AccII	CGCG	1 cut(s)	583
AciI	CCGC	3 cut(s)	291, 558, 852
AclWI	GGATC	4 cut(s)	213, 488, 501, 716
AfaI	GTAC	1 cut(s)	782
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	3 cut(s)	90, 460, 890
AjnI	CCWGG	2 cut(s)	553, 822
AluBI	AGCT	2 cut(s)	58, 425
AluI	AGCT	2 cut(s)	58, 425
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	4 cut(s)	20, 59, 210, 451
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	4 cut(s)	213, 488, 501, 716
Ama87I	CYCGRG	1 cut(s)	784
AoxI	GGCC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	284, 635
AvaI	CYCGRG	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	241
BccI	CCATC	2 cut(s)	241, 263
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	555, 824
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	4 cut(s)	20, 59, 210, 451
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	403
BfrI	CTTAAG	1 cut(s)	599
Bme1390I	CCNGG	3 cut(s)	180, 555, 824
Bme18I	GGWCC	1 cut(s)	560
BmeT110I	CYCGRG	1 cut(s)	784
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	3 cut(s)	180, 555, 824
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	497
Bse1I	ACTGG	3 cut(s)	419, 440, 617
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	555, 824
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	5 cut(s)	358, 403, 699, 729, 872
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	3 cut(s)	59, 718, 810
BseNI	ACTGG	3 cut(s)	419, 440, 617
BseRI	GAGGAG	2 cut(s)	60, 526
BseSI	GKGCMC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	583
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	784
BsiSI	CCGG	1 cut(s)	180
BsmAI	GTCTC	4 cut(s)	20, 59, 210, 451
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	205, 223, 493, 536, 721
Bsp19I	CCATGG	1 cut(s)	497
BspACI	CCGC	3 cut(s)	291, 558, 852
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	3 cut(s)	58, 717, 809
BspFNI	CGCG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	4 cut(s)	213, 488, 501, 716
BspQI	GCTCTTC	1 cut(s)	623
BspTI	CTTAAG	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	419, 440, 617
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	5 cut(s)	205, 223, 493, 536, 721
BssT1I	CCWWGG	1 cut(s)	497
Bst2UI	CCWGG	2 cut(s)	555, 824
Bst4CI	ACNGT	4 cut(s)	110, 301, 404, 761
Bst6I	CTCTTC	1 cut(s)	623
BstAFI	CTTAAG	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	5 cut(s)	45, 61, 548, 704, 796
BstDSI	CCRYGG	1 cut(s)	497
BstF5I	GGATG	5 cut(s)	358, 403, 699, 729, 872
BstFNI	CGCG	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	5 cut(s)	208, 226, 496, 539, 724
BstMAI	GTCTC	4 cut(s)	20, 59, 210, 451
BstMBI	GATC	5 cut(s)	205, 223, 493, 536, 721
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 587
BstNI	CCWGG	2 cut(s)	555, 824
BstSCI	CCNGG	3 cut(s)	178, 553, 822
BstSFI	CTRYAG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	205, 493
BstYI	RGATCY	2 cut(s)	205, 493
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	497
BtsCI	GGATG	5 cut(s)	358, 403, 699, 729, 872
BtsIMutI	CAGTG	4 cut(s)	101, 154, 712, 766
Cac8I	GCNNGC	1 cut(s)	56
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	6 cut(s)	212, 314, 322, 498, 587, 626
CviJI	RGCY	9 cut(s)	5, 49, 58, 128, 136, 251, 425, 616, 743
CviKI_1	RGCY	9 cut(s)	5, 49, 58, 128, 136, 251, 425, 616, 743
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	5 cut(s)	45, 61, 548, 704, 796
DpnI	GATC	5 cut(s)	207, 225, 495, 538, 723
DpnII	GATC	5 cut(s)	205, 223, 493, 536, 721
DrdI	GACNNNNNNGTC	1 cut(s)	558
DseDI	GACNNNNNNGTC	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
EciI	GGCGGA	1 cut(s)	867
Eco130I	CCWWGG	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	784
EcoRII	CCWGG	2 cut(s)	553, 822
EcoT14I	CCWWGG	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	6 cut(s)	215, 317, 325, 501, 590, 629
FatI	CATG	6 cut(s)	211, 313, 321, 497, 586, 625
FauI	CCCGC	1 cut(s)	284
FauNDI	CATATG	2 cut(s)	655, 847
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	5 cut(s)	365, 410, 706, 716, 879
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	6 cut(s)	215, 317, 325, 501, 590, 629
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	4 cut(s)	67, 502, 702, 772
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	2 cut(s)	284, 635
Hpy166II	GTNNAC	3 cut(s)	239, 285, 433
Hpy188I	TCNGA	2 cut(s)	268, 799
Hpy188III	TCNNGA	4 cut(s)	314, 725, 786, 890
Hpy8I	GTNNAC	3 cut(s)	239, 285, 433
HpyAV	CCTTC	4 cut(s)	51, 84, 105, 554
HpyCH4III	ACNGT	4 cut(s)	110, 301, 404, 761
HpyCH4IV	ACGT	1 cut(s)	860
HpyCH4V	TGCA	3 cut(s)	211, 239, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 587
HpyF3I	CTNAG	5 cut(s)	45, 61, 548, 704, 796
HpySE526I	ACGT	1 cut(s)	860
Hsp92II	CATG	6 cut(s)	215, 317, 325, 501, 590, 629
HspAI	GCGC	1 cut(s)	581
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	205, 223, 493, 536, 721
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	1 cut(s)	181
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	860
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	5 cut(s)	207, 225, 495, 538, 723
MboI	GATC	5 cut(s)	205, 223, 493, 536, 721
MboII	GAAGA	7 cut(s)	75, 78, 90, 287, 431, 476, 610
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	2 cut(s)	205, 493
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	189, 837, 885
MlyI	GAGTC	2 cut(s)	61, 696
MseI	TTAA	2 cut(s)	600, 884
MslI	CAYNNNNRTG	2 cut(s)	326, 568
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	3 cut(s)	180, 555, 824
MunI	CAATTG	1 cut(s)	837
MvaI	CCWGG	2 cut(s)	555, 824
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	55, 587
NciI	CCSGG	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	497
NdeI	CATATG	2 cut(s)	655, 847
NdeII	GATC	5 cut(s)	205, 223, 493, 536, 721
NlaIII	CATG	6 cut(s)	215, 317, 325, 501, 590, 629
NlaIV	GGNNCC	1 cut(s)	495
PaeR7I	CTCGAG	1 cut(s)	784
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	502, 772
PleI	GAGTC	2 cut(s)	61, 696
PpsI	GAGTC	2 cut(s)	61, 696
Psp6I	CCWGG	2 cut(s)	553, 822
PspGI	CCWGG	2 cut(s)	553, 822
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	205, 493
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	2 cut(s)	326, 568
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	2 cut(s)	600, 884
Sau3AI	GATC	5 cut(s)	205, 223, 493, 536, 721
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	2 cut(s)	61, 696
ScrFI	CCNGG	3 cut(s)	180, 555, 824
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	7 cut(s)	43, 60, 222, 427, 606, 863, 902
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	784
SinI	GGWCC	1 cut(s)	560
SlaI	CTCGAG	1 cut(s)	784
SmiMI	CAYNNNNRTG	2 cut(s)	326, 568
SmlI	CTYRAG	3 cut(s)	242, 599, 784
SmoI	CTYRAG	3 cut(s)	242, 599, 784
Sse9I	AATT	3 cut(s)	189, 837, 885
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	3 cut(s)	291, 558, 852
SspMI	CTAG	1 cut(s)	506
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	178, 553, 822
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	4 cut(s)	110, 301, 404, 761
TaiI	ACGT	1 cut(s)	863
TaqI	TCGA	3 cut(s)	343, 785, 804
TasI	AATT	3 cut(s)	189, 837, 885
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	502, 772
Tru1I	TTAA	2 cut(s)	600, 884
Tru9I	TTAA	2 cut(s)	600, 884
TscAI	CASTG	4 cut(s)	108, 154, 712, 766
TspDTI	ATGAA	4 cut(s)	330, 338, 686, 727
TspRI	CASTG	4 cut(s)	108, 154, 712, 766
Vha464I	CTTAAG	1 cut(s)	599
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XhoI	CTCGAG	1 cut(s)	784
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.