Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010510

Physical Location & Seq

Genomic Coordinates Forward (+)

3488483 .. 3492054

Gene Structure 3572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCTTCGCTCTGTCTGAACTCGTTGCCCCTGTCTCCACCTTCCCAACCCCCCAAACTCTCAGAGGCTCCTTCTCCTTCTTCTAGTTCTCTCAACATTAATAGTTATTATGGCAGCAAAGGAGAAGCCTCAAAGCCCATAGTTGTTAGTGGAAACCCACCCACCTTTGTTTCTGCTCCTGGTCGCCGAATTGTCGCTGTTGGGGATCTGCACGGAGACCTTGACCAAACAAGATGTGCACTTGAGATGGCTGGTGTGCTGAGTCCTGATGGTCAGGACTTATGGACTGGTGGAGAAACGGTATTGATTCAGCTTGGGGATATACTTGATCGAGGTGAAGATGAAATAGCCATTTTGTCCTTGCTCCGATCCTTGGACATACAGGCAAAAGATGAAGGTGGAGCAGTTTTTCAGGTCAATGGGAATCATGAGACTATGAATGTGGAAGGGGATTTTAGATACGTGGAAACTGGAGGATTTGATGAGTGTATTGATTTCCTGGAATACTTGGATGACAATAGAGATGACTGGGAAGAAGCTTTTGTTGGCTGGACTGGTGTCTCTAAACAGCTGAAGGAAGACAGGAAAATGCCCCAAAATTATTGGGATCCATGGAATCTAGTGAGGAGGCAAAAGGGTGTGATTGCCAGATCAATCCTTCTAAGACCAGGTGGTCCATTGGCATGCGAGTTAGCACGGCATGCTGTTGTTCTGAAGGTTAATGACTGGGTCTTCTGTCATGGTGGTCTTATTCCTAACCATGTTGCATATGGCGTAGAGAGGATGAACAGGGAAGTATCTCACTGGATGAGAGGCCTCAGTGACAGTGATGAGTCTGACAACCCTCACTTCCCTTTCATAGCCACCAGGGGCTATGACAGTGTAGTCTGGAACCGCTTATACTCGAGAGATACTTCAGAATTAGATGACTATCAGAACAACCAGATACATTCTATTCTTGAAGAGACGCTACACGCAGTTGGTGCTAAGGCAATGGTGGTGGGGCATACTCCTCAAACTACAGGAGCAAATTGTAAATACAATTGCAGCATATGGCGGATTGATGTAGGTATGTCCAGTGGAGTTCTTAATTCAAGACCAGAGGTTCTTGAAATCAAAGACAATAAAGCAAGAGTTATAAGAAGCAAAAAGGATACGTCCAGTGAATCTCAGGTTGTCGATTTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030145 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

397

Amino Acids

43.84

Weight (kDa)

4.98

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07010 AT1G07010 AT1G07010
fragaria_vesca	FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710 FvH4_3g39710
malus_domestica	MD11G1056900.v1.1
prunus_persica	Prupe.6G048800_v2.0.a1
pyrus_communis	pycom11g04790
rosa_chinensis	RchiOBHm_Chr5g0071581
rosa_laevigata	RLG00000036227
rosa_multiflora	Rmu_sc0005745.1_g000010
rosa_roxburghii	Rroxscaffold_1G00009590
rosa_rugosa	Rorug05G0413400
rosa_samantha	Rh5AG469300 Rh5BG488500 Rh5CG512500 Rh5DG499300
rosa_wichuraiana	Rw5G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1139
AasI	GACNNNNNNGTC	2 cut(s)	672, 884
AciI	CCGC	2 cut(s)	895, 1057
AclWI	GGATC	4 cut(s)	213, 363, 602, 615
AcuI	CTGAAG	3 cut(s)	593, 734, 900
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	3 cut(s)	962, 1095, 1112
AjnI	CCWGG	4 cut(s)	178, 498, 667, 866
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	3 cut(s)	313, 539, 571
AluI	AGCT	3 cut(s)	313, 539, 571
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	5 cut(s)	39, 210, 425, 565, 959
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	4 cut(s)	213, 363, 602, 615
Ama87I	CYCGRG	1 cut(s)	904
AoxI	GGCC	1 cut(s)	814
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	114, 1047
AseI	ATTAAT	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	904
AvaII	GGWCC	1 cut(s)	674
BaeGI	GKGCMC	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	607
BarI	GAAGNNNNNNTAC	2 cut(s)	954, 986
BbsI	GAAGAC	2 cut(s)	585, 724
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	126, 1059
BccI	CCATC	2 cut(s)	241, 263
BceAI	ACGGC	1 cut(s)	713
BciT130I	CCWGG	4 cut(s)	180, 500, 669, 868
BciVI	GTATCC	1 cut(s)	1147
BcoDI	GTCTC	5 cut(s)	39, 210, 425, 565, 959
BfaI	CTAG	2 cut(s)	84, 620
BfmI	CTRYAG	1 cut(s)	1020
BfuI	GTATCC	1 cut(s)	1147
BisI	GCNGC	2 cut(s)	115, 1048
BlsI	GCNGC	2 cut(s)	116, 1049
Bme1390I	CCNGG	4 cut(s)	180, 500, 669, 868
Bme18I	GGWCC	1 cut(s)	674
BmeT110I	CYCGRG	1 cut(s)	904
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	3 cut(s)	69, 609, 893
BmrFI	CCNGG	4 cut(s)	180, 500, 669, 868
BmrI	ACTGGG	2 cut(s)	538, 736
BmuI	ACTGGG	2 cut(s)	538, 736
BoxI	GACNNNNGTC	1 cut(s)	557
BpiI	GAAGAC	2 cut(s)	585, 724
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	930
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	372, 611, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	8 cut(s)	292, 475, 533, 559, 731, 809, 1077, 1161
Bse3DI	GCAATG	1 cut(s)	999
Bse8I	GATNNNNATC	1 cut(s)	930
BseBI	CCWGG	4 cut(s)	180, 500, 669, 868
BseDI	CCNNGG	3 cut(s)	372, 611, 867
BseGI	GGATG	3 cut(s)	517, 789, 813
BseJI	GATNNNNATC	1 cut(s)	930
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	999
BseMII	CTCAG	4 cut(s)	75, 251, 832, 1184
BseNI	ACTGG	8 cut(s)	292, 475, 533, 559, 731, 809, 1077, 1161
BseRI	GAGGAG	2 cut(s)	640, 1002
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	126, 1059
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	904
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	5 cut(s)	39, 210, 425, 565, 959
BsmBI	CGTCTC	1 cut(s)	959
BsnI	GGCC	1 cut(s)	816
Bso31I	GGTCTC	1 cut(s)	210
BsoBI	CYCGRG	1 cut(s)	904
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	205, 328, 368, 607, 650
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	2 cut(s)	895, 1057
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	4 cut(s)	74, 252, 831, 1183
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	69, 609, 893
BspPI	GGATC	4 cut(s)	213, 363, 602, 615
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	999
BsrI	ACTGG	8 cut(s)	292, 475, 533, 559, 731, 809, 1077, 1161
BssECI	CCNNGG	3 cut(s)	372, 611, 867
BssMI	GATC	5 cut(s)	205, 328, 368, 607, 650
BssT1I	CCWWGG	2 cut(s)	372, 611
Bst2UI	CCWGG	4 cut(s)	180, 500, 669, 868
Bst4CI	ACNGT	3 cut(s)	301, 827, 881
Bst6I	CTCTTC	1 cut(s)	957
BstAPI	GCANNNNNTGC	2 cut(s)	701, 983
BstBAI	YACGTR	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	685, 702
BstDEI	CTNAG	6 cut(s)	61, 260, 662, 818, 987, 1170
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	3 cut(s)	517, 789, 813
BstKTI	GATC	5 cut(s)	208, 331, 371, 610, 653
BstMAI	GTCTC	5 cut(s)	39, 210, 425, 565, 959
BstMBI	GATC	5 cut(s)	205, 328, 368, 607, 650
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 983
BstNI	CCWGG	4 cut(s)	180, 500, 669, 868
BstNSI	RCATGY	2 cut(s)	687, 704
BstPAI	GACNNNNGTC	1 cut(s)	557
BstSCI	CCNGG	4 cut(s)	178, 498, 667, 866
BstSFI	CTRYAG	1 cut(s)	1020
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	126, 1059
BstV2I	GAAGAC	2 cut(s)	585, 724
BstX2I	RGATCY	2 cut(s)	205, 607
BstYI	RGATCY	2 cut(s)	205, 607
BsuI	GTATCC	1 cut(s)	1147
BsuRI	GGCC	1 cut(s)	816
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	3 cut(s)	517, 789, 813
BtsIMutI	CAGTG	6 cut(s)	802, 826, 832, 886, 1084, 1168
Cac8I	GCNNGC	2 cut(s)	685, 702
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	674
CseI	GACGC	1 cut(s)	976
CsiI	ACCWGGT	1 cut(s)	667
CspCI	CAANNNNNGTGG	2 cut(s)	981, 1016
CviAII	CATG	6 cut(s)	428, 612, 684, 701, 740, 761
DdeI	CTNAG	6 cut(s)	61, 260, 662, 818, 987, 1170
DpnI	GATC	5 cut(s)	207, 330, 370, 609, 652
DpnII	GATC	5 cut(s)	205, 328, 368, 607, 650
DrdI	GACNNNNNNGTC	2 cut(s)	672, 884
DseDI	GACNNNNNNGTC	2 cut(s)	672, 884
Eam1104I	CTCTTC	1 cut(s)	957
EarI	CTCTTC	1 cut(s)	957
EciI	GGCGGA	1 cut(s)	1072
Eco130I	CCWWGG	2 cut(s)	372, 611
Eco147I	AGGCCT	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	674
Eco57I	CTGAAG	3 cut(s)	593, 734, 900
Eco88I	CYCGRG	1 cut(s)	904
EcoRII	CCWGG	4 cut(s)	178, 498, 667, 866
EcoT14I	CCWWGG	2 cut(s)	372, 611
ErhI	CCWWGG	2 cut(s)	372, 611
Esp3I	CGTCTC	1 cut(s)	959
FaeI	CATG	6 cut(s)	431, 615, 687, 704, 743, 764
FatI	CATG	6 cut(s)	427, 611, 683, 700, 739, 760
FauNDI	CATATG	2 cut(s)	769, 1052
Fnu4HI	GCNGC	2 cut(s)	115, 1048
FokI	GGATG	3 cut(s)	524, 796, 820
Fsp4HI	GCNGC	2 cut(s)	115, 1048
FspBI	CTAG	2 cut(s)	84, 620
GluI	GCNGC	2 cut(s)	115, 1048
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	816
HgaI	GACGC	1 cut(s)	976
Hin1II	CATG	6 cut(s)	431, 615, 687, 704, 743, 764
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	6 cut(s)	262, 307, 424, 616, 833, 1166
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	7 cut(s)	18, 64, 368, 714, 838, 919, 936
Hpy188III	TCNNGA	8 cut(s)	266, 275, 428, 889, 906, 959, 1095, 1109
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	8 cut(s)	51, 81, 87, 389, 440, 568, 668, 709
HpyCH4III	ACNGT	3 cut(s)	301, 827, 881
HpyCH4IV	ACGT	2 cut(s)	462, 1157
HpyCH4V	TGCA	4 cut(s)	211, 239, 767, 1047
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 983
HpyF3I	CTNAG	6 cut(s)	61, 260, 662, 818, 987, 1170
HpySE526I	ACGT	2 cut(s)	462, 1157
Hsp92II	CATG	6 cut(s)	431, 615, 687, 704, 743, 764
Kzo9I	GATC	5 cut(s)	205, 328, 368, 607, 650
LmnI	GCTCC	5 cut(s)	73, 181, 369, 401, 1025
Lsp1109I	GCAGC	2 cut(s)	126, 1059
MabI	ACCWGGT	1 cut(s)	667
MaeI	CTAG	2 cut(s)	84, 620
MaeII	ACGT	2 cut(s)	462, 1157
MaeIII	GTNAC	1 cut(s)	821
MalI	GATC	5 cut(s)	207, 330, 370, 609, 652
MboI	GATC	5 cut(s)	205, 328, 368, 607, 650
MboII	GAAGA	6 cut(s)	72, 350, 545, 590, 724, 974
MfeI	CAATTG	1 cut(s)	1042
MflI	RGATCY	2 cut(s)	205, 607
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	6 cut(s)	189, 598, 920, 1030, 1042, 1090
MlyI	GAGTC	2 cut(s)	271, 842
MseI	TTAA	3 cut(s)	99, 720, 1089
MslI	CAYNNNNRTG	1 cut(s)	682
MspA1I	CMGCKG	1 cut(s)	571
MspR9I	CCNGG	4 cut(s)	180, 500, 669, 868
MunI	CAATTG	1 cut(s)	1042
MvaI	CCWGG	4 cut(s)	180, 500, 669, 868
MwoI	GCNNNNNNNGC	2 cut(s)	701, 983
NcoI	CCATGG	1 cut(s)	611
NdeI	CATATG	2 cut(s)	769, 1052
NdeII	GATC	5 cut(s)	205, 328, 368, 607, 650
NlaIII	CATG	6 cut(s)	431, 615, 687, 704, 743, 764
NlaIV	GGNNCC	3 cut(s)	69, 609, 893
NmuCI	GTSAC	1 cut(s)	821
NspI	RCATGY	2 cut(s)	687, 704
PaeI	GCATGC	2 cut(s)	687, 704
PaeR7I	CTCGAG	1 cut(s)	904
PagI	TCATGA	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	816
PfeI	GAWTC	4 cut(s)	307, 424, 616, 1166
PflFI	GACNNNGTC	1 cut(s)	728
PfoI	TCCNGGA	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	116, 1049
PleI	GAGTC	2 cut(s)	270, 841
PpsI	GAGTC	2 cut(s)	270, 841
Ppu21I	YACGTR	1 cut(s)	463
PshAI	GACNNNNGTC	1 cut(s)	557
PshBI	ATTAAT	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	1139
Psp6I	CCWGG	4 cut(s)	178, 498, 667, 866
PspGI	CCWGG	4 cut(s)	178, 498, 667, 866
PspN4I	GGNNCC	3 cut(s)	69, 609, 893
PspPI	GGNCC	1 cut(s)	674
PsrI	GAACNNNNNNTAC	2 cut(s)	884, 916
PsuI	RGATCY	2 cut(s)	205, 607
PsyI	GACNNNGTC	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	571
RseI	CAYNNNNRTG	1 cut(s)	682
SaqAI	TTAA	3 cut(s)	99, 720, 1089
SatI	GCNGC	2 cut(s)	115, 1048
Sau3AI	GATC	5 cut(s)	205, 328, 368, 607, 650
Sau96I	GGNCC	1 cut(s)	674
SchI	GAGTC	2 cut(s)	271, 842
ScrFI	CCNGG	4 cut(s)	180, 500, 669, 868
SduI	GDGCHC	1 cut(s)	241
SexAI	ACCWGGT	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	1020
Sfr274I	CTCGAG	1 cut(s)	904
SinI	GGWCC	1 cut(s)	674
SlaI	CTCGAG	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	682
SmlI	CTYRAG	2 cut(s)	242, 904
SmoI	CTYRAG	2 cut(s)	242, 904
SphI	GCATGC	2 cut(s)	687, 704
Sse9I	AATT	6 cut(s)	189, 598, 920, 1030, 1042, 1090
SseBI	AGGCCT	1 cut(s)	816
SsiI	CCGC	2 cut(s)	895, 1057
SspMI	CTAG	2 cut(s)	84, 620
StuI	AGGCCT	1 cut(s)	816
StyD4I	CCNGG	4 cut(s)	178, 498, 667, 866
StyI	CCWWGG	2 cut(s)	372, 611
TaaI	ACNGT	3 cut(s)	301, 827, 881
TaiI	ACGT	2 cut(s)	465, 1160
TaqI	TCGA	3 cut(s)	331, 905, 1179
TasI	AATT	6 cut(s)	189, 598, 920, 1030, 1042, 1090
TfiI	GAWTC	4 cut(s)	307, 424, 616, 1166
Tru1I	TTAA	3 cut(s)	99, 720, 1089
Tru9I	TTAA	3 cut(s)	99, 720, 1089
TscAI	CASTG	6 cut(s)	809, 826, 832, 886, 1084, 1168
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	2 cut(s)	114, 1047
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	5 cut(s)	357, 408, 452, 800, 847
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	6 cut(s)	809, 826, 832, 886, 1084, 1168
Tth111I	GACNNNGTC	1 cut(s)	728
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	674
VspI	ATTAAT	1 cut(s)	99
XceI	RCATGY	2 cut(s)	687, 704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XhoI	CTCGAG	1 cut(s)	904
XspI	CTAG	2 cut(s)	84, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.