FvH4_3g40050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012600
Physical Location & Seq
Forward (+)
33884852 .. 33886991
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40050.t1

Sequence Viewer

Length: 501 bp
ATGGTATCCAAACAGGTGCAGAAGAGAGCGCCAGTATACAAGAAACTTCAATCCCTTCGTTCCATCTCTAACTCTCCTGCGCACAGTAAAAGCTCAATTATATTGGATGCAGTAAAATATATACAAGAACTGAAGCGAAAAATAGAGGAAATGAATCAAGAGATCGTTGCTGCCGCAGCTCAAAACTCAACAACCGCCCAAAACCCGTTCCCTGTGCAACTGGAGGTTGAACCTCGAGAGGGGGACCAAGCAGGTTTTCAAATAAAGATGTTCACAGAAAAGAGTTGTAGTGGGTTGCTTGTTTTCGTATTGGAAGCTTTTGAAGAGCTAGGCCTTGATGTTCTTCAAGCTAGGGTTTCTTGCTCTGGCAATTTTCTTTTGGAAGCAGTGACCACGATTAACAATGATAACCAAAATGGTGATGATCATCACAAAGATGCCGAGGTAGTAAGAGAAGCGATGTTGCAAGCCATTCAAAGCTGGAATGAAGTTTCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.5

Weight (kDa)

5.25

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 84 - 159 1e-17 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 36
AciI CCGC 2 cut(s) 174, 195
AcuI CTGAAG 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 6 cut(s) 50, 230, 260, 323, 347, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 6 cut(s) 93, 179, 317, 328, 350, 480
AluI AGCT 6 cut(s) 93, 179, 317, 328, 350, 480
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 170, 176
AspLEI GCGC 2 cut(s) 31, 82
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 234
AvaII GGWCC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 157, 188
BccI CCATC 1 cut(s) 71
BciVI GTATCC 1 cut(s) 16
BclI TGATCA 1 cut(s) 424
BfaI CTAG 2 cut(s) 329, 351
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 242
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 3 cut(s) 171, 174, 177
BlsI GCNGC 3 cut(s) 172, 175, 178
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 245
BmsI GCATC 2 cut(s) 97, 427
BpmI CTGGAG 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 32, 225
Bse8I GATNNNNATC 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 2 cut(s) 32, 225
BseXI GCAGC 2 cut(s) 157, 188
BsgI GTGCAG 1 cut(s) 38
BshFI GGCC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 234
Bsp143I GATC 2 cut(s) 162, 424
BspACI CCGC 2 cut(s) 174, 195
BspANI GGCC 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 242
BspQI GCTCTTC 1 cut(s) 318
BsrI ACTGG 2 cut(s) 32, 225
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 2 cut(s) 162, 424
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 17, 318
BstC8I GCNNGC 1 cut(s) 468
BstF5I GGATG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 2 cut(s) 31, 82
BstKTI GATC 2 cut(s) 165, 427
BstMBI GATC 2 cut(s) 162, 424
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 157, 188
BstZ17I GTATAC 1 cut(s) 37
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 473
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 468
CfoI GCGC 2 cut(s) 31, 82
Cfr13I GGNCC 1 cut(s) 244
CviJI RGCY 8 cut(s) 93, 179, 317, 328, 333, 350, 470, 480
CviKI_1 RGCY 8 cut(s) 93, 179, 317, 328, 333, 350, 470, 480
DpnI GATC 2 cut(s) 164, 426
DpnII GATC 2 cut(s) 162, 424
Eam1104I CTCTTC 2 cut(s) 17, 318
EarI CTCTTC 2 cut(s) 17, 318
Eco147I AGGCCT 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 234
FaiI YATR 4 cut(s) 37, 101, 120, 122
FaqI GGGAC 1 cut(s) 257
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 171, 174, 177
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 3 cut(s) 171, 174, 177
FspBI CTAG 2 cut(s) 329, 351
FspI TGCGCA 1 cut(s) 81
GlaI GCGC 2 cut(s) 30, 81
GluI GCNGC 3 cut(s) 171, 174, 177
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 333
HhaI GCGC 2 cut(s) 31, 82
Hin6I GCGC 2 cut(s) 29, 80
HinP1I GCGC 2 cut(s) 29, 80
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 1 cut(s) 154
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 37, 273
Hpy188III TCNNGA 2 cut(s) 158, 236
Hpy8I GTNNAC 2 cut(s) 37, 273
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 19, 110, 217, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HspAI GCGC 2 cut(s) 29, 80
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 2 cut(s) 162, 424
LguI GCTCTTC 1 cut(s) 318
LpnPI CCDG 7 cut(s) 45, 90, 206, 225, 237, 351, 466
Lsp1109I GCAGC 2 cut(s) 157, 188
LweI GCATC 2 cut(s) 97, 427
MaeI CTAG 2 cut(s) 329, 351
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 164, 426
MboI GATC 2 cut(s) 162, 424
MboII GAAGA 3 cut(s) 34, 335, 335
MluCI AATT 2 cut(s) 96, 370
MnlI CCTC 5 cut(s) 139, 217, 232, 243, 436
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 2 cut(s) 162, 424
NlaIV GGNNCC 1 cut(s) 245
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 388
NsbI TGCGCA 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 234
PceI AGGCCT 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 3 cut(s) 172, 175, 178
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 435
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 3 cut(s) 171, 174, 177
Sau3AI GATC 2 cut(s) 162, 424
Sau96I GGNCC 1 cut(s) 244
SfaNI GCATC 2 cut(s) 97, 427
Sfr274I CTCGAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 2 cut(s) 96, 370
SseBI AGGCCT 1 cut(s) 333
SsiI CCGC 2 cut(s) 174, 195
SspMI CTAG 2 cut(s) 329, 351
StuI AGGCCT 1 cut(s) 333
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 235
TasI AATT 2 cut(s) 96, 370
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 170, 176
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 167, 501
TspRI CASTG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 2 cut(s) 329, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.