RchiOBHm_Chr5g0072201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012600
Physical Location & Seq
Forward (+)
78136182 .. 78137839
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34717

Sequence Viewer

Length: 558 bp
ATGCATCAGCAAGAAAGAAGAGAGAGTCAGAGGGAGAGAGAGAGAGAGATCGAAGCCATGGTATCCAAACAGGTGCAGAAGAGAGATCCAATATACAAGAAACTTCAATCCCTTCGTTCAATCTCCAACTCCCCTGCGCACAGTAAAAGCTCAATTATATTGGATGCAGTAACATATATACAAGAACTGAAGCGAAAAGTGGAGGAAATGAATCAAGAGATCGTTGCTGCCAGAGCTCAAGTCTCAACACCCGCCCAAAACCCGTTCCCTATGCAACTGAAAGTTGAACCTCGAGAAGAGGATCAAGCAGGTTTTCAAATAAAGATGTTCACTGAAAAGAGTTGCAGTGGGTTGCTTGTTTTCGTATTGGAAGCGTTTGAAGAGTTAGGCCTAGATGTTCATCAAGCTAGGGTTTCTTGCTCCAACAATTTTCTTTTAGAAGCAGTGGCCACAATTAACAATGACGACCAAAATGGTGAGGATCATAACAAAGATGCCGAGGTAGTAAGAAAAGCGATGCTGCAAGCCATTCAAAGCTGGAGTGAAGTTTCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.18

Weight (kDa)

5.5

Isoelectric Point (pI)

62.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 94 - 178 1.6e-18 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 299
AciI CCGC 1 cut(s) 252
AclWI GGATC 3 cut(s) 80, 309, 489
AcoI YGGCCR 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 209
AgsI TTSAA 6 cut(s) 107, 120, 287, 317, 380, 533
AluBI AGCT 4 cut(s) 150, 236, 407, 537
AluI AGCT 4 cut(s) 150, 236, 407, 537
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 3 cut(s) 80, 309, 489
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 2 cut(s) 388, 447
ApeKI GCWGC 2 cut(s) 227, 520
AspLEI GCGC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 291
BalI TGGCCA 1 cut(s) 449
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 214, 507
BciVI GTATCC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 2 cut(s) 392, 408
BfuAI ACCTGC 1 cut(s) 299
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 2 cut(s) 228, 521
BlsI GCNGC 2 cut(s) 229, 522
BmeT110I CYCGRG 1 cut(s) 291
BmsI GCATC 4 cut(s) 13, 154, 484, 507
BpuEI CTTGAG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 57, 498
Bse8I GATNNNNATC 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 57, 498
BseGI GGATG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 399
BseXI GCAGC 2 cut(s) 214, 507
BsgI GTGCAG 1 cut(s) 95
BshFI GGCC 2 cut(s) 390, 449
BsiHKAI GWGCWC 1 cut(s) 238
BsiHKCI CYCGRG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 247
BsnI GGCC 2 cut(s) 390, 449
BsoBI CYCGRG 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 5 cut(s) 48, 85, 219, 301, 481
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 390, 449
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 3 cut(s) 80, 309, 489
BssECI CCNNGG 2 cut(s) 57, 498
BssMI GATC 5 cut(s) 48, 85, 219, 301, 481
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 4 cut(s) 13, 74, 291, 375
BstC8I GCNNGC 1 cut(s) 525
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 5 cut(s) 51, 88, 222, 304, 484
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 5 cut(s) 48, 85, 219, 301, 481
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 214, 507
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 390, 449
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 2 cut(s) 352, 450
BtsIMutI CAGTG 3 cut(s) 330, 352, 450
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 525
CfoI GCGC 1 cut(s) 139
CviAII CATG 1 cut(s) 58
CviJI RGCY 8 cut(s) 56, 150, 236, 390, 407, 449, 527, 537
CviKI_1 RGCY 8 cut(s) 56, 150, 236, 390, 407, 449, 527, 537
DpnI GATC 5 cut(s) 50, 87, 221, 303, 483
DpnII GATC 5 cut(s) 48, 85, 219, 301, 481
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 4 cut(s) 13, 74, 291, 375
EarI CTCTTC 4 cut(s) 13, 74, 291, 375
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 61
FaiI YATR 8 cut(s) 59, 94, 158, 175, 177, 179, 272, 486
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 228, 521
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 228, 521
FspBI CTAG 2 cut(s) 392, 408
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 228, 521
HaeIII GGCC 2 cut(s) 390, 449
HhaI GCGC 1 cut(s) 139
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 2 cut(s) 25, 211
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 215, 293
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 6 cut(s) 4, 76, 167, 274, 345, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 5 cut(s) 48, 85, 219, 301, 481
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 5 cut(s) 56, 147, 244, 294, 523
Lsp1109I GCAGC 2 cut(s) 214, 507
LweI GCATC 4 cut(s) 13, 154, 484, 507
MaeI CTAG 2 cut(s) 392, 408
MaeIII GTNAC 1 cut(s) 169
MalI GATC 5 cut(s) 50, 87, 221, 303, 483
MboI GATC 5 cut(s) 48, 85, 219, 301, 481
MboII GAAGA 4 cut(s) 30, 91, 308, 392
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 3 cut(s) 153, 427, 453
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 150, 447
MnlI CCTC 6 cut(s) 24, 196, 292, 300, 472, 493
Mox20I TGGCCA 1 cut(s) 449
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 449
MseI TTAA 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 449
MwoI GCNNNNNNNGC 1 cut(s) 233
NcoI CCATGG 1 cut(s) 57
NdeII GATC 5 cut(s) 48, 85, 219, 301, 481
NlaIII CATG 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 523
NsbI TGCGCA 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 291
PceI AGGCCT 1 cut(s) 390
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 2 cut(s) 229, 522
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 85
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 228, 521
Sau3AI GATC 5 cut(s) 48, 85, 219, 301, 481
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 238
SetI ASST 8 cut(s) 75, 152, 238, 292, 313, 409, 504, 539
SfaNI GCATC 4 cut(s) 13, 154, 484, 507
Sfr274I CTCGAG 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 237, 291
SmoI CTYRAG 2 cut(s) 237, 291
Sse9I AATT 3 cut(s) 153, 427, 453
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 1 cut(s) 252
SspMI CTAG 2 cut(s) 392, 408
SstI GAGCTC 1 cut(s) 238
StuI AGGCCT 1 cut(s) 390
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 51, 292
TasI AATT 3 cut(s) 153, 427, 453
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 3 cut(s) 337, 352, 450
TseI GCWGC 2 cut(s) 227, 520
TspDTI ATGAA 2 cut(s) 224, 389
TspRI CASTG 3 cut(s) 337, 352, 450
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 2 cut(s) 392, 408
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.