RLG00000036287

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012600
Physical Location & Seq
Forward (+)
78474167 .. 78475406
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036287

Sequence Viewer

Length: 501 bp
ATGGTATCCAAACAGGTGCAGAAGAGAGATCCAGTATACAAGAAACTTCAATCCCTTCGTTCAATCTCCAACTCCCCTGCGCACAGTAAAAGCTCAATTATATTGGATGCAGTAACATATATACAAGGACTGAAGCAAAAAGTGGAGGAAATGAATCAAGAGATCATTGATGCCAGAGCTCAAGTCTCAACACCCGCCCAAAACCCGTTCCCTATGCAACTGAAAGTTGAACCTCGAGAGGAGGATCAAGCAGGTTTTCAAATAAAGATGTTCACTGAAAAGAGTTGCAGTGGGTTGCTTGTTTTCGTATTGGAAGCGTTTGAAGAGTTAGGCCTAGATGTTCTTCAAGCTAGGGTTTCTTGCTCCAACAATTTTCTTTTAGAAGCAGTGGCCACAATTAACAATGACGACCAAAATGGTGATGATCTTAACAAAGATGCCGAGGTAGTAAGAAATGCGATGCTGCAAGCCATTCAAAGCTGGAGTGAAGTTTCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.57

Weight (kDa)

4.85

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 75 - 159 5.4e-18 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 36
AciI CCGC 1 cut(s) 195
AclWI GGATC 2 cut(s) 23, 252
AcoI YGGCCR 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 152
AgsI TTSAA 7 cut(s) 50, 63, 230, 260, 323, 347, 476
AluBI AGCT 4 cut(s) 93, 179, 350, 480
AluI AGCT 4 cut(s) 93, 179, 350, 480
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 23, 252
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 2 cut(s) 331, 390
ApeKI GCWGC 1 cut(s) 463
AspLEI GCGC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 234
BalI TGGCCA 1 cut(s) 392
BanII GRGCYC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 450
BciVI GTATCC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 2 cut(s) 335, 351
BfuAI ACCTGC 1 cut(s) 242
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 1 cut(s) 464
BlsI GCNGC 1 cut(s) 465
BmeT110I CYCGRG 1 cut(s) 234
BmsI GCATC 4 cut(s) 97, 160, 427, 450
BpuEI CTTGAG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 441
Bse1I ACTGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 38
BshFI GGCC 2 cut(s) 333, 392
BsiHKAI GWGCWC 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 2 cut(s) 333, 392
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 4 cut(s) 28, 162, 244, 424
BspACI CCGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 333, 392
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 2 cut(s) 23, 252
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 4 cut(s) 28, 162, 244, 424
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 17, 318
BstC8I GCNNGC 1 cut(s) 468
BstF5I GGATG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 4 cut(s) 31, 165, 247, 427
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 4 cut(s) 28, 162, 244, 424
BstV1I GCAGC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BstZ17I GTATAC 1 cut(s) 37
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 333, 392
BtgZI GCGATG 1 cut(s) 473
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 2 cut(s) 295, 393
BtsIMutI CAGTG 3 cut(s) 273, 295, 393
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 468
CfoI GCGC 1 cut(s) 82
CviJI RGCY 7 cut(s) 93, 179, 333, 350, 392, 470, 480
CviKI_1 RGCY 7 cut(s) 93, 179, 333, 350, 392, 470, 480
DpnI GATC 4 cut(s) 30, 164, 246, 426
DpnII GATC 4 cut(s) 28, 162, 244, 424
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 17, 318
EarI CTCTTC 2 cut(s) 17, 318
Ecl136II GAGCTC 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 181
FaiI YATR 6 cut(s) 37, 101, 118, 120, 122, 215
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 464
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 464
FspBI CTAG 2 cut(s) 335, 351
FspI TGCGCA 1 cut(s) 81
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 464
HaeIII GGCC 2 cut(s) 333, 392
HhaI GCGC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 154
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 37, 273
Hpy188III TCNNGA 2 cut(s) 158, 236
Hpy8I GTNNAC 2 cut(s) 37, 273
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 5 cut(s) 19, 110, 217, 288, 466
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 4 cut(s) 28, 162, 244, 424
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 5 cut(s) 45, 90, 187, 237, 466
Lsp1109I GCAGC 1 cut(s) 450
LweI GCATC 4 cut(s) 97, 160, 427, 450
MaeI CTAG 2 cut(s) 335, 351
MaeIII GTNAC 1 cut(s) 112
MalI GATC 4 cut(s) 30, 164, 246, 426
MboI GATC 4 cut(s) 28, 162, 244, 424
MboII GAAGA 3 cut(s) 34, 335, 335
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 3 cut(s) 96, 370, 396
MluNI TGGCCA 1 cut(s) 392
MmeI TCCRAC 2 cut(s) 93, 390
MnlI CCTC 5 cut(s) 139, 232, 235, 243, 436
Mox20I TGGCCA 1 cut(s) 392
MscI TGGCCA 1 cut(s) 392
MseI TTAA 2 cut(s) 399, 429
Msp20I TGGCCA 1 cut(s) 392
NdeII GATC 4 cut(s) 28, 162, 244, 424
NmeAIII GCCGAG 1 cut(s) 466
NsbI TGCGCA 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 234
PceI AGGCCT 1 cut(s) 333
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 28
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 399, 429
SatI GCNGC 1 cut(s) 464
Sau3AI GATC 4 cut(s) 28, 162, 244, 424
SduI GDGCHC 1 cut(s) 181
SetI ASST 8 cut(s) 18, 95, 181, 235, 256, 352, 447, 482
SfaNI GCATC 4 cut(s) 97, 160, 427, 450
Sfr274I CTCGAG 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 180, 234
SmoI CTYRAG 2 cut(s) 180, 234
Sse9I AATT 3 cut(s) 96, 370, 396
SseBI AGGCCT 1 cut(s) 333
SsiI CCGC 1 cut(s) 195
SspMI CTAG 2 cut(s) 335, 351
SstI GAGCTC 1 cut(s) 181
StuI AGGCCT 1 cut(s) 333
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 235
TasI AATT 3 cut(s) 96, 370, 396
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 399, 429
Tru9I TTAA 2 cut(s) 399, 429
TscAI CASTG 3 cut(s) 280, 295, 393
TseI GCWGC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 3 cut(s) 280, 295, 393
XhoI CTCGAG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 2 cut(s) 335, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.