Rorug05G0416900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012600
Physical Location & Seq
Forward (+)
57857659 .. 57858786
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0416900.1

Sequence Viewer

Length: 351 bp
ATGTCGCGGGACCCATCTACGAGGTCGTTGCTTATGCTTGGCAGTTGTACAAGATCCTCCAAACCCTCTTCTTCCTTTTTGCGTTTGTTTACCAGCTTTGATTCCATTGTTTTGATGCGCTTTCATGTTTCTGATCAGTTCTGGATTGTTCTGTATGTCGAGCATTTTTTATGCCAAGGCTGGAATTCGTTGAATGACAACTTTGTGAAGCTTGTCTCTTGGTATGATAATGAATGGGCTTATAGGAGGGTGCAGAGAGATGCCTCTTACTCAAGAAATGAGATTCTAGGCCTGACTTTGCAGATTACTATTGATTTCAAGCAGCAAAAATGGAAGGAAGATGAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.83

Weight (kDa)

7.79

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 7
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 1 cut(s) 49
AgsI TTSAA 2 cut(s) 193, 319
AluBI AGCT 2 cut(s) 96, 211
AluI AGCT 2 cut(s) 96, 211
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 1 cut(s) 48
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 184
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 10
AvaII GGWCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 334
BccI CCATC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 2 cut(s) 11, 12
BmsI GCATC 2 cut(s) 105, 250
BpuEI CTTGAG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 291
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 47
Bsp143I GATC 2 cut(s) 53, 133
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 291
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 11, 12
BspPI GGATC 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 53, 133
BssT1I CCWWGG 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 73
BstAUI TGTACA 1 cut(s) 47
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 2 cut(s) 56, 136
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 2 cut(s) 53, 133
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 1 cut(s) 291
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 48
CviAII CATG 1 cut(s) 125
CviJI RGCY 5 cut(s) 96, 180, 211, 239, 291
CviKI_1 RGCY 5 cut(s) 96, 180, 211, 239, 291
CviQI GTAC 1 cut(s) 48
DpnI GATC 2 cut(s) 55, 135
DpnII GATC 2 cut(s) 53, 133
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 128
FaiI YATR 6 cut(s) 35, 126, 156, 172, 225, 243
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 124
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 291
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 101, 283
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 142, 273
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 253, 301
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 1 cut(s) 118
KflI GGGWCCC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 53, 133
LpnPI CCDG 4 cut(s) 106, 127, 166, 305
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 105, 250
MaeI CTAG 1 cut(s) 287
MalI GATC 2 cut(s) 55, 135
MboI GATC 2 cut(s) 53, 133
MboII GAAGA 3 cut(s) 60, 63, 350
MflI RGATCY 1 cut(s) 53
MluCI AATT 1 cut(s) 184
MnlI CCTC 5 cut(s) 15, 67, 76, 240, 274
MvnI CGCG 1 cut(s) 7
NdeII GATC 2 cut(s) 53, 133
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 2 cut(s) 11, 12
PceI AGGCCT 1 cut(s) 291
PfeI GAWTC 2 cut(s) 101, 283
PkrI GCNGC 1 cut(s) 324
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 11, 12
PspPI GGNCC 1 cut(s) 10
PspPPI RGGWCCY 1 cut(s) 10
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 2 cut(s) 53, 133
Sau96I GGNCC 1 cut(s) 10
SetI ASST 3 cut(s) 26, 98, 213
SfaNI GCATC 2 cut(s) 105, 250
SinI GGWCC 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 1 cut(s) 184
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 1 cut(s) 7
SspMI CTAG 1 cut(s) 287
StuI AGGCCT 1 cut(s) 291
StyI CCWWGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 184
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 2 cut(s) 101, 283
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 113, 246
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 1 cut(s) 184
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.