Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008667.1

Orthogroup ID

OG0012600

Physical Location & Seq

Genomic Coordinates Forward (+)

61338 .. 62587

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008667.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggtatccaaacaggtgccgaagagagatccagtatacaagaaacttcaatcccttcgttcaatctccaactcccctgcgcacagtaaaagctcaattatattggatgcagtaacatatatacaagaactgaagcgaaaagtggaggaaatgaatcaagagatcgttgctgccagagctcaagtctcagcacccgcccaaaacccgttccctatgcaactgaaagttgaacctcgagaggaggatcaagcaggttttcaaataaagatgttcactgaaaagagttgcagtgggttgcttgttttcgtattggaagcgtttgaagagttaggcctagatgttcatcaagctagggtttcttgctccaacaattttcttttagaagcagtggccacaattaacaatgacgaccaaaatggtgatgatcataacaaagatgccgaggtagtaagaaaagcgatgctgcaagccattcaaagctggagtgaagtttcccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.62

Weight (kDa)

5.43

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012600)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40050 FvH4_3g40050
malus_domestica	MD03G1058700.v1.1 MD11G1060700.v1.1
prunus_persica	Prupe.6G045200_v2.0.a1 Prupe.6G045200_v2.0.a1
pyrus_communis	pycom03g04690 pycom11g05020
rosa_chinensis	RchiOBHm_Chr5g0072201
rosa_laevigata	RLG00000036287
rosa_multiflora	Rmu_sc0008667.1_g000019
rosa_roxburghii	Rroxscaffold_1G00009030
rosa_rugosa	Rorug05G0416800 Rorug05G0416900
rosa_samantha	Rh5AG472900 Rh5BG492800 Rh5CG516800 Rh5DG505100
rosa_wichuraiana	Rw5G043940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	23, 252
AcoI	YGGCCR	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	152
AgsI	TTSAA	6 cut(s)	50, 63, 230, 260, 323, 476
AluBI	AGCT	4 cut(s)	93, 179, 350, 480
AluI	AGCT	4 cut(s)	93, 179, 350, 480
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	23, 252
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	2 cut(s)	331, 390
ApeKI	GCWGC	2 cut(s)	170, 463
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	157, 450
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	335, 351
BfuAI	ACCTGC	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	171, 464
BlsI	GCNGC	2 cut(s)	172, 465
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	3 cut(s)	97, 427, 450
BpuEI	CTTGAG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	157, 450
BshFI	GGCC	2 cut(s)	333, 392
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	333, 392
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	4 cut(s)	28, 162, 244, 424
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	333, 392
BspCNI	CTCAG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	23, 252
BspT107I	GGYRCC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	4 cut(s)	28, 162, 244, 424
BssNAI	GTATAC	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	2 cut(s)	17, 318
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	4 cut(s)	31, 165, 247, 427
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	4 cut(s)	28, 162, 244, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	157, 450
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BstZ17I	GTATAC	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	333, 392
BtgZI	GCGATG	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	2 cut(s)	295, 393
BtsIMutI	CAGTG	3 cut(s)	273, 295, 393
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	1 cut(s)	82
CviJI	RGCY	7 cut(s)	93, 179, 333, 350, 392, 470, 480
CviKI_1	RGCY	7 cut(s)	93, 179, 333, 350, 392, 470, 480
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	4 cut(s)	30, 164, 246, 426
DpnII	GATC	4 cut(s)	28, 162, 244, 424
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	2 cut(s)	17, 318
EarI	CTCTTC	2 cut(s)	17, 318
Ecl136II	GAGCTC	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	181
FaiI	YATR	7 cut(s)	37, 101, 118, 120, 122, 215, 429
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	171, 464
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	2 cut(s)	171, 464
FspBI	CTAG	2 cut(s)	335, 351
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	171, 464
HaeIII	GGCC	2 cut(s)	333, 392
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	37, 273
Hpy188III	TCNNGA	2 cut(s)	158, 236
Hpy8I	GTNNAC	2 cut(s)	37, 273
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	4 cut(s)	110, 217, 288, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	28, 162, 244, 424
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	5 cut(s)	45, 90, 187, 237, 466
Lsp1109I	GCAGC	2 cut(s)	157, 450
LweI	GCATC	3 cut(s)	97, 427, 450
MaeI	CTAG	2 cut(s)	335, 351
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	4 cut(s)	30, 164, 246, 426
MboI	GATC	4 cut(s)	28, 162, 244, 424
MboII	GAAGA	2 cut(s)	34, 335
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	3 cut(s)	96, 370, 396
MluNI	TGGCCA	1 cut(s)	392
MmeI	TCCRAC	2 cut(s)	93, 390
MnlI	CCTC	5 cut(s)	139, 232, 235, 243, 436
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	1 cut(s)	399
Msp20I	TGGCCA	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	4 cut(s)	28, 162, 244, 424
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	466
NsbI	TGCGCA	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	172, 465
Psp124BI	GAGCTC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	171, 464
Sau3AI	GATC	4 cut(s)	28, 162, 244, 424
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	8 cut(s)	18, 95, 181, 235, 256, 352, 447, 482
SfaNI	GCATC	3 cut(s)	97, 427, 450
Sfr274I	CTCGAG	1 cut(s)	234
SlaI	CTCGAG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	180, 234
SmoI	CTYRAG	2 cut(s)	180, 234
Sse9I	AATT	3 cut(s)	96, 370, 396
SseBI	AGGCCT	1 cut(s)	333
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	2 cut(s)	335, 351
SstI	GAGCTC	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	235
TasI	AATT	3 cut(s)	96, 370, 396
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	280, 295, 393
TseI	GCWGC	2 cut(s)	170, 463
TspDTI	ATGAA	2 cut(s)	167, 332
TspRI	CASTG	3 cut(s)	280, 295, 393
XhoI	CTCGAG	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	2 cut(s)	335, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.