Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013869

Physical Location & Seq

Genomic Coordinates Forward (+)

33993280 .. 33996140

Gene Structure 2861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGTGTTGAAGCTTGAAATGGATAATAAGTCTTATATATTGATGCAAAGGTACGAGTTAGGGAGACAACTGGGTAAAGGCACTTTTGCCAAGGTTTACTATGCAAGGAGCTTGATAACAAATCAGGCTGTGGCGATCAAGGTTGTTGACAAAGAGAAGATTATGAAGGTAGGGCTGATGGATCAGATAAAGCGTGAGATATCTGTTATGAGACTGGTTAGACATCCCAATATTATACACCTTTATGAGGTCTTGGCAACCAAAACTAAGATATACTTTGTCATTGAGTATGCTAAAGGTGGTGAGCTATTTAACAAGGTTGCTAAAGGAAAGCTGAAGGAGGATGTCGCACGGAAGTATTTCCAGCAGCTGATCAATGCTCTTGATTTCTGTCATAGCAGGGGAGTTTATCACCGGGATATTAAGCCAGAGAACTTGTTGCTAGATGAGAATGATAATTTGAAGATATCTGATTTTGGGTTAAGTGCCCTTGCAGAAAGCAAGCGCCAAGATGGTCTGCTTCATACCACTTGTGGTACTCCTGCCTATGTTGCTCCAGAAGTCATTAATCGGAAAGGCTATGATGGTGTGAAAGCTGATGTTTGGTCTTGTGGGGTGGTCTTGTATGTCTTATTGGCTGGTTATCTCCCGTTTCATGATTCAAATTTGATGGAGATGTACAGGAAAATCGGTAAAGCAGAGTTCAGATGCCCTAATTGGTTCTCACCAGAAGCACGTAGGCTATTGTGCAAGATGTTGGATCCAAATCCCAACACTAGAATTACCTTGGCGAAAGTTAGGGAAAGTTCTTGGTTCAGAAGAGGACCAAAATCCAAAGAGAAAGAGGTGGCTCCGGCGGCAACAGAAGCTTCCAGTCCCAGTGAGAATGAGAATAATTTGGCTGTTGAGGCAAACCAAGAGTCAGGGAGACCTTCAAACTTGAATGCTTTTGATATTATATCCCTATCTGATGGGTTTGATCTGTCCGGCTTGTTCGAGAAAAATTCTCTAAGTAGGGAAGCAAGATTCACTTCAAGAAAGCCTGCCACAGTCATCATCTCCAAGCTAGAAGAAATGGCCAAGTATCTGAAGCTAAAAGTGAATAAGAAGGATCATGGATTGTTGAAAATGGATAGACTGCAGGAAGGCAGAAAGGGTTTTTTGTCCATTGATGCAGAGATATTTGAGATCACTCCGAATTTTCATTTAGTAGAGGTCAAGAAATCAAATGGAGATACAATGGAATACCAGCAGATGTTGGAAGACATAAGGCCTGCTCTGCGAGATATTGTCTGGGTTTGGCAAGGGGAGCAAGAACAGACATCGCAGGTGCAGCAGCTACAAGAACAAGAAGAAGTGCAACAGCAACAACAAGAACAATTGCCTCAGAATCCGCCACAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

469

Amino Acids

53.65

Weight (kDa)

8.77

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	18 - 272	5.3e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 268	1.2e-40	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	111 - 260	1.3e-06	Kinase-like
NAF	PF03822	311 - 369	4.3e-24	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07070 AT5G58380
fragaria_vesca	FvH4_3g40220 FvH4_3g40220
malus_domestica	MD03G1059600.v1.1 MD11G1061700.v1.1
prunus_persica	Prupe.6G043700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072431
rosa_laevigata	RLG00000036298
rosa_multiflora	Rmu_sc0008676.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008780
rosa_rugosa	Rorug05G0418100 Rorug05G0418200
rosa_samantha	Rh5AG474600 Rh5BG494700 Rh5CG518700
rosa_wichuraiana	Rw5G044070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1318
Acc36I	ACCTGC	1 cut(s)	1318
AciI	CCGC	2 cut(s)	857, 1394
AclWI	GGATC	4 cut(s)	189, 755, 768, 1119
AcoI	YGGCCR	1 cut(s)	1077
AcsI	RAATTY	3 cut(s)	664, 1003, 1198
AcuI	CTGAAG	2 cut(s)	356, 1109
AfaI	GTAC	3 cut(s)	53, 538, 680
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	8 cut(s)	10, 17, 463, 663, 936, 943, 1035, 1126
Alw26I	GTCTC	3 cut(s)	58, 205, 922
AlwI	GGATC	4 cut(s)	189, 755, 768, 1119
AlwNI	CAGNNNCTG	1 cut(s)	370
AoxI	GGCC	2 cut(s)	1077, 1271
ApeKI	GCWGC	3 cut(s)	367, 1333, 1336
ApoI	RAATTY	3 cut(s)	664, 1003, 1198
ArsI	GACNNNNNNTTYG	2 cut(s)	905, 937
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	314, 404, 717
AvaII	GGWCC	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	1079
BamHI	GGATCC	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	1269
BbvI	GCAGC	3 cut(s)	379, 1345, 1348
BccI	CCATC	5 cut(s)	172, 506, 578, 664, 965
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	3 cut(s)	58, 205, 922
BfaI	CTAG	3 cut(s)	443, 777, 1067
BfmI	CTRYAG	1 cut(s)	1139
BfoI	RGCGCY	1 cut(s)	508
BfuAI	ACCTGC	1 cut(s)	1318
BisI	GCNGC	4 cut(s)	368, 858, 1334, 1337
BlsI	GCNGC	4 cut(s)	369, 859, 1335, 1338
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	2 cut(s)	762, 852
BmrFI	CCNGG	1 cut(s)	416
BmrI	ACTGGG	2 cut(s)	80, 873
BmsI	GCATC	3 cut(s)	33, 698, 1162
BmuI	ACTGGG	2 cut(s)	80, 873
BpiI	GAAGAC	1 cut(s)	1269
BpmI	CTGGAG	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	737
BsaBI	GATNNNNATC	1 cut(s)	765
BsaI	GGTCTC	1 cut(s)	922
BsaJI	CCNNGG	2 cut(s)	90, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	4 cut(s)	75, 219, 873, 879
Bse8I	GATNNNNATC	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	90, 786
BseGI	GGATG	2 cut(s)	223, 349
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	1400
BseNI	ACTGG	4 cut(s)	75, 219, 873, 879
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	379, 1345, 1348
BsgI	GTGCAG	1 cut(s)	1352
BshFI	GGCC	2 cut(s)	1079, 1273
BsiSI	CCGG	3 cut(s)	415, 854, 987
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	3 cut(s)	58, 205, 922
BsmFI	GGGAC	1 cut(s)	861
BsmI	GAATGC	1 cut(s)	949
BsnI	GGCC	2 cut(s)	1079, 1273
Bso31I	GGTCTC	1 cut(s)	922
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	7 cut(s)	135, 181, 372, 760, 979, 1111, 1188
BspACI	CCGC	2 cut(s)	857, 1394
BspANI	GGCC	2 cut(s)	1079, 1273
BspCNI	CTCAG	1 cut(s)	1399
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	762, 852
BspMAI	CTGCAG	1 cut(s)	1143
BspMI	ACCTGC	1 cut(s)	1318
BspPI	GGATC	4 cut(s)	189, 755, 768, 1119
BspTNI	GGTCTC	1 cut(s)	922
BsrGI	TGTACA	1 cut(s)	678
BsrI	ACTGG	4 cut(s)	75, 219, 873, 879
BssECI	CCNNGG	2 cut(s)	90, 786
BssMI	GATC	7 cut(s)	135, 181, 372, 760, 979, 1111, 1188
BssT1I	CCWWGG	2 cut(s)	90, 786
Bst4CI	ACNGT	1 cut(s)	1051
Bst6I	CTCTTC	1 cut(s)	814
BstAUI	TGTACA	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	503, 1044, 1275
BstDEI	CTNAG	3 cut(s)	267, 1010, 1386
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	223, 349
BstH2I	RGCGCY	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	7 cut(s)	138, 184, 375, 763, 982, 1114, 1191
BstMAI	GTCTC	3 cut(s)	58, 205, 922
BstMBI	GATC	7 cut(s)	135, 181, 372, 760, 979, 1111, 1188
BstMWI	GCNNNNNNNGC	7 cut(s)	551, 857, 866, 908, 1279, 1309, 1333
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	1139
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	379, 1345, 1348
BstV2I	GAAGAC	1 cut(s)	1269
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	1079, 1273
BtgZI	GCGATG	1 cut(s)	1308
BtsCI	GGATG	2 cut(s)	223, 349
BtsIMutI	CAGTG	1 cut(s)	886
BveI	ACCTGC	1 cut(s)	1318
Cac8I	GCNNGC	3 cut(s)	503, 1044, 1275
CaiI	CAGNNNCTG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	655
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	824
Csp6I	GTAC	3 cut(s)	52, 537, 679
CviAII	CATG	2 cut(s)	656, 1115
CviQI	GTAC	3 cut(s)	52, 537, 679
DdeI	CTNAG	3 cut(s)	267, 1010, 1386
DpnI	GATC	7 cut(s)	137, 183, 374, 762, 981, 1113, 1190
DpnII	GATC	7 cut(s)	135, 181, 372, 760, 979, 1111, 1188
EaeI	YGGCCR	1 cut(s)	1077
Eam1104I	CTCTTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	814
EciI	GGCGGA	1 cut(s)	1383
Eco130I	CCWWGG	2 cut(s)	90, 786
Eco147I	AGGCCT	1 cut(s)	1273
Eco31I	GGTCTC	1 cut(s)	922
Eco32I	GATATC	2 cut(s)	201, 468
Eco47I	GGWCC	1 cut(s)	824
Eco57I	CTGAAG	2 cut(s)	356, 1109
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRV	GATATC	2 cut(s)	201, 468
EcoT14I	CCWWGG	2 cut(s)	90, 786
ErhI	CCWWGG	2 cut(s)	90, 786
FaeI	CATG	2 cut(s)	659, 1118
FalI	AAGNNNNNCTT	4 cut(s)	260, 292, 1015, 1047
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	2 cut(s)	655, 1114
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	368, 858, 1334, 1337
FokI	GGATG	2 cut(s)	210, 356
Fsp4HI	GCNGC	4 cut(s)	368, 858, 1334, 1337
FspBI	CTAG	3 cut(s)	443, 777, 1067
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	4 cut(s)	368, 858, 1334, 1337
GsuI	CTGGAG	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	1079, 1273
HapII	CCGG	3 cut(s)	415, 854, 987
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	659, 1118
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	11, 867
HinfI	GANTC	4 cut(s)	659, 920, 1026, 1390
HpaII	CCGG	3 cut(s)	415, 854, 987
HphI	GGTGA	3 cut(s)	314, 404, 717
Hpy166II	GTNNAC	2 cut(s)	97, 148
Hpy188I	TCNGA	9 cut(s)	186, 472, 573, 707, 818, 970, 1089, 1197, 1389
Hpy188III	TCNNGA	6 cut(s)	383, 557, 656, 997, 1035, 1219
Hpy8I	GTNNAC	2 cut(s)	97, 148
HpyAV	CCTTC	5 cut(s)	160, 331, 942, 1102, 1139
HpyCH4III	ACNGT	1 cut(s)	1051
HpyCH4IV	ACGT	1 cut(s)	736
HpyCH4V	TGCA	8 cut(s)	46, 104, 494, 750, 1141, 1175, 1333, 1360
HpyF10VI	GCNNNNNNNGC	7 cut(s)	551, 857, 866, 908, 1279, 1309, 1333
HpyF3I	CTNAG	3 cut(s)	267, 1010, 1386
HpySE526I	ACGT	1 cut(s)	736
Hsp92II	CATG	2 cut(s)	659, 1118
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	7 cut(s)	135, 181, 372, 760, 979, 1111, 1188
LmnI	GCTCC	4 cut(s)	108, 559, 856, 1309
Lsp1109I	GCAGC	3 cut(s)	379, 1345, 1348
LweI	GCATC	3 cut(s)	33, 698, 1162
MaeI	CTAG	3 cut(s)	443, 777, 1067
MaeII	ACGT	1 cut(s)	736
MalI	GATC	7 cut(s)	137, 183, 374, 762, 981, 1113, 1190
MboI	GATC	7 cut(s)	135, 181, 372, 760, 979, 1111, 1188
MboII	GAAGA	6 cut(s)	169, 475, 831, 1082, 1274, 1364
MfeI	CAATTG	1 cut(s)	1379
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	1079
MluCI	AATT	8 cut(s)	457, 664, 715, 780, 895, 1003, 1198, 1379
MluNI	TGGCCA	1 cut(s)	1079
MlyI	GAGTC	1 cut(s)	929
MmeI	TCCRAC	2 cut(s)	738, 1239
MnlI	CCTC	7 cut(s)	241, 334, 815, 838, 901, 1207, 1395
Mox20I	TGGCCA	1 cut(s)	1079
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	1079
MseI	TTAA	4 cut(s)	312, 423, 482, 567
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	1079
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	3 cut(s)	415, 854, 987
MspR9I	CCNGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	1379
Mva1269I	GAATGC	1 cut(s)	949
MwoI	GCNNNNNNNGC	7 cut(s)	551, 857, 866, 908, 1279, 1309, 1333
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	7 cut(s)	135, 181, 372, 760, 979, 1111, 1188
NlaIII	CATG	2 cut(s)	659, 1118
NlaIV	GGNNCC	2 cut(s)	762, 852
PagI	TCATGA	1 cut(s)	655
PaqCI	CACCTGC	1 cut(s)	1318
PceI	AGGCCT	1 cut(s)	1273
PctI	GAATGC	1 cut(s)	949
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	659, 1026, 1390
PkrI	GCNGC	4 cut(s)	369, 859, 1335, 1338
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
Ppu21I	YACGTR	1 cut(s)	737
PshBI	ATTAAT	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	762, 852
PspPI	GGNCC	1 cut(s)	824
PstI	CTGCAG	1 cut(s)	1143
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	760
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	3 cut(s)	53, 538, 680
RsaNI	GTAC	3 cut(s)	52, 537, 679
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	312, 423, 482, 567
SatI	GCNGC	4 cut(s)	368, 858, 1334, 1337
Sau3AI	GATC	7 cut(s)	135, 181, 372, 760, 979, 1111, 1188
Sau96I	GGNCC	1 cut(s)	824
SchI	GAGTC	1 cut(s)	929
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	3 cut(s)	33, 698, 1162
SfcI	CTRYAG	1 cut(s)	1139
SinI	GGWCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	8 cut(s)	457, 664, 715, 780, 895, 1003, 1198, 1379
SseBI	AGGCCT	1 cut(s)	1273
SsiI	CCGC	2 cut(s)	857, 1394
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	3 cut(s)	443, 777, 1067
StuI	AGGCCT	1 cut(s)	1273
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	90, 786
TaaI	ACNGT	1 cut(s)	1051
TaiI	ACGT	1 cut(s)	739
TaqI	TCGA	1 cut(s)	996
TasI	AATT	8 cut(s)	457, 664, 715, 780, 895, 1003, 1198, 1379
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	3 cut(s)	659, 1026, 1390
Tru1I	TTAA	4 cut(s)	312, 423, 482, 567
Tru9I	TTAA	4 cut(s)	312, 423, 482, 567
TscAI	CASTG	1 cut(s)	886
TseI	GCWGC	3 cut(s)	367, 1333, 1336
TspDTI	ATGAA	4 cut(s)	179, 512, 644, 1193
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	824
VspI	ATTAAT	1 cut(s)	567
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	3 cut(s)	664, 1003, 1198
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	3 cut(s)	443, 777, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.