Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013869

Physical Location & Seq

Genomic Coordinates Forward (+)

72500871 .. 72503915

Gene Structure 3045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG518700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAGAATAACTCTTATATATTGATGCAAAGGTACGAGTTAGGGAGACAGCTGGGTAAAGGCACCTTTGCCAAGGTTTACTATGCAAGGAGCTTGATAACTAATCAGGCTGTGGCTATCAAGGTTATTGACAAAGAGAAGATTATGAAGGTAGGACTGATGGATCAGATAAAGCGAGAGATATCTGTTATGCGACTGGTTAGACACCCCAATATTATACACCTTTATGAGGTCTTGGCGACCAAAACTAAGATATACTTTGTCATTGAGTATGCCAAAGGCGGTGAGCTATTTAACAAGGTGGCTAAAGGAAAGCTGAAGGAGGATGTTGCACGGAAATATTTCCAGCAGCTGATAAATGCACTTGATTTCTGTCATAGCAGGGGAGTTTATCACCGGGATATTAAACCAGAGAACTTATTGCTAGATGAGAATGATAATCTGAAGATCTCTGATTTTGGGTTAAGTGCCCTTGCGGAAAGCAAGCGCCAAGATGGTCTGCTTCATACCACTTGTGGTACTCCTGCCTATGTTGCTCCAGAAGTTATTAATCGGAAAGGCTATGATGGTGTGAAAGCTGATGTTTGGTCTTGTGGGGTGGTCTTATATGTCTTATTGGCTGGTTATCTCCCATTTCATGATTCAAATTTGATGGAGATGTACAGGAAAATTGGTAAAGCAGAGTTCAGATGTCCAAATTGGTTCTCACCAGAAGCACGTAGGCTTTTGTGCAAGATGTTGGATCCAAATCCCAATACTAGAATTTCCTTAGCCAAAGTTAGGGACAGTTCTTGGTTCAGAAGAGGACCAAAATCCAAAGAGAAAGAGGTGGCTCCGGCAGGAACAGAAGCTTCAAGCCCCAGTGAGAATAATATGGCTGCTGAGGAAAACGAAGAGTCAGGGAGACCTTCAAACTTGAATGCTTTTGATATTATATCCCTTTCTGATGGGTTTGATCTGTCTGGCTTGTTCGAAAAAAATCCTCTAAATAGGGAAGCAAGATTCACTTCAAGAGAGCCTGCCGGAGTCATCATCTCCAAGATAGAAGAAATGGCTAATCATCTGAAGCTAAAAGTGAAAAAGAAGGATCATGGATTGTTGAAAATGGATCGATTGGAGGAAGGCAGAAAGGGGTTTTTGTCCATTGATGCAGAGATATTTGAGATCACTCCAACTTTTCATTTGGTAGAGGTCAAGAAATCAAATGGAGATACATTGGAGTACCAGAAGATGTTGGAGGACATGAGGCCTGCTCTGCAAGATATTGTCTGGGTTTGGCAAGGTGAGCAAGAACCGCAGGAGCAGCAGCAACATGAACAAGAAGAACTGCCACAGAATCAGCCACAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

450

Amino Acids

51.51

Weight (kDa)

7.63

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 266	9.1e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 261	1.8e-40	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	104 - 254	9.6e-07	Kinase-like
NAF	PF03822	303 - 361	5.2e-24	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07070 AT5G58380
fragaria_vesca	FvH4_3g40220 FvH4_3g40220
malus_domestica	MD03G1059600.v1.1 MD11G1061700.v1.1
prunus_persica	Prupe.6G043700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072431
rosa_laevigata	RLG00000036298
rosa_multiflora	Rmu_sc0008676.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008780
rosa_rugosa	Rorug05G0418100 Rorug05G0418200
rosa_samantha	Rh5AG474600 Rh5BG494700 Rh5CG518700
rosa_wichuraiana	Rw5G044070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AciI	CCGC	3 cut(s)	282, 476, 1295
AclWI	GGATC	5 cut(s)	171, 737, 750, 1095, 1116
AcsI	RAATTY	2 cut(s)	646, 762
AcuI	CTGAAG	3 cut(s)	338, 464, 1085
AfaI	GTAC	4 cut(s)	35, 520, 662, 1223
AfiI	CCNNNNNNNGG	2 cut(s)	229, 780
AgsI	TTSAA	6 cut(s)	645, 855, 912, 919, 1011, 1102
AluBI	AGCT	8 cut(s)	52, 93, 289, 316, 352, 578, 851, 1069
AluI	AGCT	8 cut(s)	52, 93, 289, 316, 352, 578, 851, 1069
Alw26I	GTCTC	2 cut(s)	40, 898
AlwI	GGATC	5 cut(s)	171, 737, 750, 1095, 1116
AlwNI	CAGNNNCTG	1 cut(s)	352
AoxI	GGCC	1 cut(s)	1247
ApeKI	GCWGC	4 cut(s)	349, 878, 1303, 1306
ApoI	RAATTY	2 cut(s)	646, 762
AseI	ATTAAT	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	806
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	4 cut(s)	296, 386, 699, 1295
AsuII	TTCGAA	1 cut(s)	972
AvaII	GGWCC	1 cut(s)	806
BaeGI	GKGCMC	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	742
BanI	GGYRCC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	4 cut(s)	361, 865, 1315, 1318
BccI	CCATC	5 cut(s)	154, 488, 560, 646, 941
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	40, 898
BfaI	CTAG	2 cut(s)	425, 759
BfoI	RGCGCY	1 cut(s)	490
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	4 cut(s)	350, 879, 1304, 1307
BlsI	GCNGC	4 cut(s)	351, 880, 1305, 1308
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	3 cut(s)	64, 744, 834
BmrFI	CCNGG	1 cut(s)	398
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	2 cut(s)	15, 1138
BmuI	ACTGGG	1 cut(s)	855
BplI	GAGNNNNNCTC	3 cut(s)	28, 1237, 1269
BpmI	CTGGAG	1 cut(s)	522
Bpu10I	CCTNAGC	2 cut(s)	769, 882
Bpu14I	TTCGAA	1 cut(s)	972
BpuMI	CCSGG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	1111
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	898
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 780
Bse1I	ACTGG	2 cut(s)	201, 861
Bse8I	GATNNNNATC	1 cut(s)	747
BseCI	ATCGAT	1 cut(s)	1111
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	2 cut(s)	229, 780
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	2 cut(s)	201, 861
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	361, 865, 1315, 1318
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	1 cut(s)	1249
BshNI	GGYRCC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	1111
BsiSI	CCGG	3 cut(s)	397, 836, 1023
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	2 cut(s)	229, 780
BsmAI	GTCTC	2 cut(s)	40, 898
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	1 cut(s)	1249
Bso31I	GGTCTC	1 cut(s)	898
Bsp119I	TTCGAA	1 cut(s)	972
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	7 cut(s)	163, 447, 742, 955, 1087, 1108, 1164
BspACI	CCGC	3 cut(s)	282, 476, 1295
BspANI	GGCC	1 cut(s)	1249
BspCNI	CTCAG	1 cut(s)	874
BspDI	ATCGAT	1 cut(s)	1111
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	3 cut(s)	64, 744, 834
BspPI	GGATC	5 cut(s)	171, 737, 750, 1095, 1116
BspT104I	TTCGAA	1 cut(s)	972
BspT107I	GGYRCC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	898
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	2 cut(s)	201, 861
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	7 cut(s)	163, 447, 742, 955, 1087, 1108, 1164
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	2 cut(s)	796, 888
BstAUI	TGTACA	1 cut(s)	660
BstBAI	YACGTR	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	972
BstC8I	GCNNGC	3 cut(s)	485, 1020, 1251
BstDEI	CTNAG	3 cut(s)	249, 769, 882
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	7 cut(s)	166, 450, 745, 958, 1090, 1111, 1167
BstMAI	GTCTC	2 cut(s)	40, 898
BstMBI	GATC	7 cut(s)	163, 447, 742, 955, 1087, 1108, 1164
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 1255, 1285, 1294, 1303
BstSCI	CCNGG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	361, 865, 1315, 1318
BstX2I	RGATCY	2 cut(s)	447, 742
BstYI	RGATCY	2 cut(s)	447, 742
Bsu15I	ATCGAT	1 cut(s)	1111
BsuRI	GGCC	1 cut(s)	1249
BsuTUI	ATCGAT	1 cut(s)	1111
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	3 cut(s)	485, 1020, 1251
CaiI	CAGNNNCTG	1 cut(s)	352
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	806
ClaI	ATCGAT	1 cut(s)	1111
Csp6I	GTAC	4 cut(s)	34, 519, 661, 1222
CviAII	CATG	4 cut(s)	638, 1091, 1243, 1313
CviQI	GTAC	4 cut(s)	34, 519, 661, 1222
DdeI	CTNAG	3 cut(s)	249, 769, 882
DpnI	GATC	7 cut(s)	165, 449, 744, 957, 1089, 1110, 1166
DpnII	GATC	7 cut(s)	163, 447, 742, 955, 1087, 1108, 1164
Eam1104I	CTCTTC	2 cut(s)	796, 888
EarI	CTCTTC	2 cut(s)	796, 888
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	1249
Eco31I	GGTCTC	1 cut(s)	898
Eco32I	GATATC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	806
Eco57I	CTGAAG	3 cut(s)	338, 464, 1085
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	4 cut(s)	641, 1094, 1246, 1316
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 991, 1023
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	4 cut(s)	637, 1090, 1242, 1312
Fnu4HI	GCNGC	4 cut(s)	350, 879, 1304, 1307
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	4 cut(s)	350, 879, 1304, 1307
FspBI	CTAG	2 cut(s)	425, 759
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	4 cut(s)	350, 879, 1304, 1307
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	1249
HapII	CCGG	3 cut(s)	397, 836, 1023
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	4 cut(s)	641, 1094, 1246, 1316
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	849
HinfI	GANTC	5 cut(s)	641, 896, 1002, 1026, 1336
HpaII	CCGG	3 cut(s)	397, 836, 1023
HphI	GGTGA	4 cut(s)	296, 386, 699, 1295
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	8 cut(s)	168, 444, 454, 555, 689, 800, 946, 1065
Hpy188III	TCNNGA	4 cut(s)	539, 638, 1011, 1195
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	142, 313, 918, 1078, 1115
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	7 cut(s)	28, 86, 332, 362, 732, 1151, 1258
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 1255, 1285, 1294, 1303
HpyF3I	CTNAG	3 cut(s)	249, 769, 882
HpySE526I	ACGT	1 cut(s)	718
Hsp92II	CATG	4 cut(s)	641, 1094, 1246, 1316
HspAI	GCGC	1 cut(s)	487
Kzo9I	GATC	7 cut(s)	163, 447, 742, 955, 1087, 1108, 1164
LmnI	GCTCC	4 cut(s)	90, 541, 838, 1300
Lsp1109I	GCAGC	4 cut(s)	361, 865, 1315, 1318
LweI	GCATC	2 cut(s)	15, 1138
MaeI	CTAG	2 cut(s)	425, 759
MaeII	ACGT	1 cut(s)	718
MalI	GATC	7 cut(s)	165, 449, 744, 957, 1089, 1110, 1166
MboI	GATC	7 cut(s)	163, 447, 742, 955, 1087, 1108, 1164
MboII	GAAGA	7 cut(s)	151, 457, 813, 905, 1058, 1240, 1334
MflI	RGATCY	2 cut(s)	447, 742
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	5 cut(s)	646, 669, 697, 762, 1346
MlyI	GAGTC	2 cut(s)	905, 1035
MmeI	TCCRAC	3 cut(s)	720, 1196, 1215
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	4 cut(s)	294, 405, 464, 549
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	2 cut(s)	52, 352
MspI	CCGG	3 cut(s)	397, 836, 1023
MspR9I	CCNGG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	925
MwoI	GCNNNNNNNGC	5 cut(s)	533, 1255, 1285, 1294, 1303
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	7 cut(s)	163, 447, 742, 955, 1087, 1108, 1164
NlaIII	CATG	4 cut(s)	641, 1094, 1246, 1316
NlaIV	GGNNCC	3 cut(s)	64, 744, 834
NspV	TTCGAA	1 cut(s)	972
PagI	TCATGA	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	1249
PctI	GAATGC	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	641, 1002, 1336
PkrI	GCNGC	4 cut(s)	351, 880, 1305, 1308
PleI	GAGTC	2 cut(s)	904, 1034
PpsI	GAGTC	2 cut(s)	904, 1034
Ppu21I	YACGTR	1 cut(s)	719
PshBI	ATTAAT	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	64, 744, 834
PspPI	GGNCC	1 cut(s)	806
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	447, 742
PvuII	CAGCTG	2 cut(s)	52, 352
RsaI	GTAC	4 cut(s)	35, 520, 662, 1223
RsaNI	GTAC	4 cut(s)	34, 519, 661, 1222
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	4 cut(s)	294, 405, 464, 549
SatI	GCNGC	4 cut(s)	350, 879, 1304, 1307
Sau3AI	GATC	7 cut(s)	163, 447, 742, 955, 1087, 1108, 1164
Sau96I	GGNCC	1 cut(s)	806
SchI	GAGTC	2 cut(s)	905, 1035
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	15, 1138
SfuI	TTCGAA	1 cut(s)	972
SinI	GGWCC	1 cut(s)	806
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	5 cut(s)	646, 669, 697, 762, 1346
SseBI	AGGCCT	1 cut(s)	1249
SsiI	CCGC	3 cut(s)	282, 476, 1295
SspI	AATATT	2 cut(s)	214, 341
SspMI	CTAG	2 cut(s)	425, 759
StuI	AGGCCT	1 cut(s)	1249
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	2 cut(s)	972, 1111
TasI	AATT	5 cut(s)	646, 669, 697, 762, 1346
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	3 cut(s)	641, 1002, 1336
Tru1I	TTAA	4 cut(s)	294, 405, 464, 549
Tru9I	TTAA	4 cut(s)	294, 405, 464, 549
TscAI	CASTG	1 cut(s)	868
TseI	GCWGC	4 cut(s)	349, 878, 1303, 1306
TspDTI	ATGAA	5 cut(s)	161, 494, 626, 1169, 1329
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	1 cut(s)	868
VpaK11BI	GGWCC	1 cut(s)	806
VspI	ATTAAT	1 cut(s)	549
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	646, 762
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	2 cut(s)	425, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.