Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0013869

Physical Location & Seq

Genomic Coordinates Forward (+)

5378188 .. 5380687

Gene Structure 2500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1061700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGAGAATAAATCGCATGTGCTGATGCAAAGATATGAGCTAGGGAGATTGCTGGGTCAAGGCACATTTGCCAGGGTTTACTATGCAAGGAGCTTGATAACTAATCAGGGTGTGGCCATTAAGGTTATTGACAAAGAAAAGATTATGAAGGTCGGGCTGATGGATCAGATCAAGCGAGAAATCTCTGTTATGAGACTGGTTAGACACCCTAATATTATACACCTCTACGAGGTCATGGCAACCAAAACTAAGATATACTTTATCATTGAATATGCTAAAGGTGGTGAGCTGTTTAACAAGGTCGCTAAAGGAAAGCTGAAGGAGGAAGTTGCAAGGAAATATTTTGCGCAGTTAATCAATGCTCTTGATTTCTGTCATAGTAGGGGTGTATATCATCGGGATATAAAGCCAGAGAACTTGTTGCTCGATGAGAATGATAATTTGAAGATCTCTGATTTTGGGTTAAGTGCCCTCGCTGAATGCAAGCACCAAGATGGGCTACTCCATACCACGTGTGGTACTCCTGCCTATGTTGCTCCAGAAGTTATTAACAGGAAAGGCTATGATGGTGTGAAAGCTGATATTTGGTCTTGTGGGGTTGTTTTGTATGTATTATTGGCAGGCTATCTACCATTTCATGATTCAAATTTGATGGAGATGTACCGGAAGATTGGGAAGGCAGAATTTAAATGCCCAAATTTTTTCTCACCAGAGGCACGTAGGCTACTGTGCAAGATGTTTGATCCAAATCCCAATACTAGGATTTCCTTAGCCAAAGTTAGGGAAAGTCCTTGGTGCAGAAAGGGGCCATACTCAAAAAATATGAAATCTGAAATGGGAAACAAGGATGTGGCTCGTACGAGCGCAGAAGCTTCTACTTCCAGTGAGAATATTATGGCTTCTGAGGAAAAGCAAGAACCAGGAAGACCTCCGAACTTGAATGCTTTTGATATTATCTCCCTTTCTGCTGGATTTGATCTGTCTGGCTTGTTTAAAAAAGATCCTTTTTACAAAGAAGCAAGATTCACTTCCAGACAACCTGCGATGGTCATCATCTCCAAGTTAAAAGAAATGGCTAAGCAACTGAAGCTGAAAGTGAAGAAGAAGGATGACGGATTGTTGAAAATGGATGGATTAAAGGAAGGTAAAAAGGGGATTTTGTCCATAGATACAGAGATATTTGAAATCACTGCAACTTTCCATCTTGTCGAGGTGAAGAAATCAAGTGGGGATACTTTGGAATTCCAGAAGATGTTGGACGACATAAGACCTGCTCTCCGAGACATAGTCTGGGTTTGGCAAGGTGAGGAAGAGCAACAGCTGCAGGAGGAGCAGCAACAACAACAACAAGAAATCCAGCCACATCCACAAGAAGATCAACTGCCTCAGCATCCGCCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

468

Amino Acids

53.41

Weight (kDa)

8.85

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 265	3.7e-75	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 262	3.4e-39	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	104 - 215	3.7e-06	Kinase-like
NAF	PF03822	310 - 368	1.7e-23	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07070 AT5G58380
fragaria_vesca	FvH4_3g40220 FvH4_3g40220
malus_domestica	MD03G1059600.v1.1 MD11G1061700.v1.1
prunus_persica	Prupe.6G043700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072431
rosa_laevigata	RLG00000036298
rosa_multiflora	Rmu_sc0008676.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008780
rosa_rugosa	Rorug05G0418100 Rorug05G0418200
rosa_samantha	Rh5AG474600 Rh5BG494700 Rh5CG518700
rosa_wichuraiana	Rw5G044070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	348
Acc36I	ACCTGC	2 cut(s)	1048, 1279
AciI	CCGC	1 cut(s)	1394
AclWI	GGATC	3 cut(s)	171, 737, 995
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	4 cut(s)	646, 683, 697, 1241
AcuI	CTGAAG	2 cut(s)	338, 1106
AcvI	CACGTG	1 cut(s)	513
AfaI	GTAC	3 cut(s)	520, 662, 859
AfiI	CCNNNNNNNGG	3 cut(s)	229, 759, 780
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	6 cut(s)	269, 445, 645, 940, 1123, 1184
AjnI	CCWGG	2 cut(s)	71, 919
AluBI	AGCT	8 cut(s)	40, 93, 289, 316, 578, 872, 1090, 1321
AluI	AGCT	8 cut(s)	40, 93, 289, 316, 578, 872, 1090, 1321
Alw26I	GTCTC	2 cut(s)	187, 1275
AlwI	GGATC	3 cut(s)	171, 737, 995
AoxI	GGCC	2 cut(s)	114, 806
ApeKI	GCWGC	2 cut(s)	1321, 1333
ApoI	RAATTY	4 cut(s)	646, 683, 697, 1241
AspLEI	GCGC	2 cut(s)	349, 866
AspS9I	GGNCC	1 cut(s)	806
AsuHPI	GGTGA	4 cut(s)	296, 699, 1225, 1316
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	931
BbvCI	CCTCAGC	1 cut(s)	1386
BbvI	GCAGC	2 cut(s)	1308, 1345
BccI	CCATC	7 cut(s)	154, 488, 560, 646, 1039, 1124, 1209
BciT130I	CCWGG	2 cut(s)	73, 921
BciVI	GTATCC	1 cut(s)	1225
BcoDI	GTCTC	2 cut(s)	187, 1275
BfaI	CTAG	2 cut(s)	41, 759
BfmI	CTRYAG	1 cut(s)	1322
BfuAI	ACCTGC	2 cut(s)	1048, 1279
BfuI	GTATCC	1 cut(s)	1225
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	2 cut(s)	1322, 1334
BlpI	GCTNAGC	1 cut(s)	1077
BlsI	GCNGC	2 cut(s)	1323, 1335
Bme1390I	CCNGG	2 cut(s)	73, 921
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	1 cut(s)	807
BmrFI	CCNGG	2 cut(s)	73, 921
BmsI	GCATC	2 cut(s)	15, 1399
BpiI	GAAGAC	1 cut(s)	931
BpmI	CTGGAG	1 cut(s)	522
Bpu10I	CCTNAGC	2 cut(s)	769, 1386
Bpu1102I	GCTNAGC	1 cut(s)	1077
BsaAI	YACGTR	2 cut(s)	513, 719
BsaBI	GATNNNNATC	2 cut(s)	747, 1049
BsaJI	CCNNGG	2 cut(s)	72, 791
BsaWI	WCCGGW	1 cut(s)	663
BsaXI	ACNNNNNCTCC	2 cut(s)	1260, 1290
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 759, 780
Bse1I	ACTGG	2 cut(s)	201, 882
Bse8I	GATNNNNATC	2 cut(s)	747, 1049
BseBI	CCWGG	2 cut(s)	73, 921
BseDI	CCNNGG	2 cut(s)	72, 791
BseGI	GGATG	5 cut(s)	853, 1114, 1135, 1363, 1390
BseJI	GATNNNNATC	2 cut(s)	747, 1049
BseLI	CCNNNNNNNGG	3 cut(s)	229, 759, 780
BseMII	CTCAG	2 cut(s)	894, 1400
BseNI	ACTGG	2 cut(s)	201, 882
BseRI	GAGGAG	1 cut(s)	1343
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	2 cut(s)	1308, 1345
BseYI	CCCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	817
BshFI	GGCC	2 cut(s)	116, 808
BsiSI	CCGG	1 cut(s)	664
BsiWI	CGTACG	1 cut(s)	857
BslI	CCNNNNNNNGG	3 cut(s)	229, 759, 780
BsmAI	GTCTC	2 cut(s)	187, 1275
BsmI	GAATGC	2 cut(s)	485, 946
BsnI	GGCC	2 cut(s)	116, 808
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	7 cut(s)	163, 168, 447, 742, 976, 1000, 1375
Bsp1720I	GCTNAGC	1 cut(s)	1077
BspACI	CCGC	1 cut(s)	1394
BspANI	GGCC	2 cut(s)	116, 808
BspCNI	CTCAG	2 cut(s)	895, 1399
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	807
BspMAI	CTGCAG	1 cut(s)	1326
BspMI	ACCTGC	2 cut(s)	1048, 1279
BspPI	GGATC	3 cut(s)	171, 737, 995
BspQI	GCTCTTC	1 cut(s)	1305
BsrI	ACTGG	2 cut(s)	201, 882
BssECI	CCNNGG	2 cut(s)	72, 791
BssMI	GATC	7 cut(s)	163, 168, 447, 742, 976, 1000, 1375
BssT1I	CCWWGG	1 cut(s)	791
Bst2UI	CCWGG	2 cut(s)	73, 921
Bst4CI	ACNGT	1 cut(s)	729
Bst6I	CTCTTC	1 cut(s)	1305
BstAPI	GCANNNNNTGC	1 cut(s)	1321
BstBAI	YACGTR	2 cut(s)	513, 719
BstC8I	GCNNGC	2 cut(s)	485, 622
BstDEI	CTNAG	5 cut(s)	249, 769, 903, 1077, 1386
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	5 cut(s)	853, 1114, 1135, 1363, 1390
BstHHI	GCGC	2 cut(s)	349, 866
BstKTI	GATC	7 cut(s)	166, 171, 450, 745, 979, 1003, 1378
BstMAI	GTCTC	2 cut(s)	187, 1275
BstMBI	GATC	7 cut(s)	163, 168, 447, 742, 976, 1000, 1375
BstMWI	GCNNNNNNNGC	4 cut(s)	533, 1087, 1321, 1330
BstNI	CCWGG	2 cut(s)	73, 921
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	71, 919
BstSFI	CTRYAG	1 cut(s)	1322
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	2 cut(s)	1308, 1345
BstV2I	GAAGAC	1 cut(s)	931
BstX2I	RGATCY	2 cut(s)	447, 1000
BstYI	RGATCY	2 cut(s)	447, 1000
BsuI	GTATCC	1 cut(s)	1225
BsuRI	GGCC	2 cut(s)	116, 808
BtgZI	GCGATG	1 cut(s)	1058
BtsCI	GGATG	5 cut(s)	853, 1114, 1135, 1363, 1390
BtsI	GCAGTG	1 cut(s)	1188
BtsIMutI	CAGTG	2 cut(s)	889, 1188
BveI	ACCTGC	2 cut(s)	1048, 1279
Cac8I	GCNNGC	2 cut(s)	485, 622
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	349, 866
Cfr13I	GGNCC	1 cut(s)	806
Csp6I	GTAC	3 cut(s)	519, 661, 858
CviAII	CATG	3 cut(s)	17, 235, 638
CviQI	GTAC	3 cut(s)	519, 661, 858
DdeI	CTNAG	5 cut(s)	249, 769, 903, 1077, 1386
DpnI	GATC	7 cut(s)	165, 170, 449, 744, 978, 1002, 1377
DpnII	GATC	7 cut(s)	163, 168, 447, 742, 976, 1000, 1375
DraI	TTTAAA	2 cut(s)	688, 994
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	1305
EarI	CTCTTC	1 cut(s)	1305
EciI	GGCGGA	1 cut(s)	1383
Eco130I	CCWWGG	1 cut(s)	791
Eco57I	CTGAAG	2 cut(s)	338, 1106
Eco72I	CACGTG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	1241
EcoRII	CCWGG	2 cut(s)	71, 919
EcoT14I	CCWWGG	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	3 cut(s)	20, 238, 641
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 1012, 1044
FatI	CATG	3 cut(s)	16, 234, 637
Fnu4HI	GCNGC	2 cut(s)	1322, 1334
FokI	GGATG	5 cut(s)	860, 1121, 1142, 1350, 1377
Fsp4HI	GCNGC	2 cut(s)	1322, 1334
FspBI	CTAG	2 cut(s)	41, 759
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	2 cut(s)	348, 865
GluI	GCNGC	2 cut(s)	1322, 1334
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	116, 808
HapII	CCGG	1 cut(s)	664
HhaI	GCGC	2 cut(s)	349, 866
Hin1II	CATG	3 cut(s)	20, 238, 641
Hin6I	GCGC	2 cut(s)	347, 864
HinP1I	GCGC	2 cut(s)	347, 864
HindIII	AAGCTT	1 cut(s)	870
HinfI	GANTC	2 cut(s)	641, 1023
HpaII	CCGG	1 cut(s)	664
HphI	GGTGA	4 cut(s)	296, 699, 1225, 1316
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	6 cut(s)	168, 454, 832, 904, 933, 1280
Hpy188III	TCNNGA	6 cut(s)	365, 398, 539, 638, 1032, 1246
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	142, 313, 670, 1099, 1136
HpyCH4III	ACNGT	1 cut(s)	729
HpyCH4IV	ACGT	2 cut(s)	512, 718
HpyCH4V	TGCA	8 cut(s)	28, 86, 332, 483, 732, 798, 1193, 1324
HpyF10VI	GCNNNNNNNGC	4 cut(s)	533, 1087, 1321, 1330
HpyF3I	CTNAG	5 cut(s)	249, 769, 903, 1077, 1386
HpySE526I	ACGT	2 cut(s)	512, 718
Hsp92II	CATG	3 cut(s)	20, 238, 641
HspAI	GCGC	2 cut(s)	347, 864
Kzo9I	GATC	7 cut(s)	163, 168, 447, 742, 976, 1000, 1375
LguI	GCTCTTC	1 cut(s)	1305
LmnI	GCTCC	3 cut(s)	90, 541, 1330
Lsp1109I	GCAGC	2 cut(s)	1308, 1345
LweI	GCATC	2 cut(s)	15, 1399
MaeI	CTAG	2 cut(s)	41, 759
MaeII	ACGT	2 cut(s)	512, 718
MalI	GATC	7 cut(s)	165, 170, 449, 744, 978, 1002, 1377
MboI	GATC	7 cut(s)	163, 168, 447, 742, 976, 1000, 1375
MboII	GAAGA	9 cut(s)	457, 679, 936, 1111, 1114, 1228, 1261, 1322, 1385
MflI	RGATCY	2 cut(s)	447, 1000
MhlI	GDGCHC	1 cut(s)	472
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	5 cut(s)	439, 646, 683, 697, 1241
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	1236
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	9 cut(s)	120, 294, 353, 464, 549, 687, 993, 1064, 1136
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	1321
MspI	CCGG	1 cut(s)	664
MspR9I	CCNGG	2 cut(s)	73, 921
Mva1269I	GAATGC	2 cut(s)	485, 946
MvaI	CCWGG	2 cut(s)	73, 921
MwoI	GCNNNNNNNGC	4 cut(s)	533, 1087, 1321, 1330
NdeII	GATC	7 cut(s)	163, 168, 447, 742, 976, 1000, 1375
NlaIII	CATG	3 cut(s)	20, 238, 641
NlaIV	GGNNCC	1 cut(s)	807
NsbI	TGCGCA	1 cut(s)	348
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	1305
PctI	GAATGC	2 cut(s)	485, 946
PfeI	GAWTC	2 cut(s)	641, 1023
Pfl23II	CGTACG	1 cut(s)	857
PflFI	GACNNNGTC	1 cut(s)	1286
PkrI	GCNGC	2 cut(s)	1323, 1335
PmaCI	CACGTG	1 cut(s)	513
PmlI	CACGTG	1 cut(s)	513
Ppu21I	YACGTR	2 cut(s)	513, 719
Psp6I	CCWGG	2 cut(s)	71, 919
PspCI	CACGTG	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	71, 919
PspLI	CGTACG	1 cut(s)	857
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	1 cut(s)	806
PstI	CTGCAG	1 cut(s)	1326
PsuI	RGATCY	2 cut(s)	447, 1000
PsyI	GACNNNGTC	1 cut(s)	1286
PvuII	CAGCTG	1 cut(s)	1321
RsaI	GTAC	3 cut(s)	520, 662, 859
RsaNI	GTAC	3 cut(s)	519, 661, 858
RseI	CAYNNNNRTG	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	1305
SaqAI	TTAA	9 cut(s)	120, 294, 353, 464, 549, 687, 993, 1064, 1136
SatI	GCNGC	2 cut(s)	1322, 1334
Sau3AI	GATC	7 cut(s)	163, 168, 447, 742, 976, 1000, 1375
Sau96I	GGNCC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	73, 921
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	15, 1399
SfcI	CTRYAG	1 cut(s)	1322
SmiI	ATTTAAAT	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	5 cut(s)	439, 646, 683, 697, 1241
SsiI	CCGC	1 cut(s)	1394
SspI	AATATT	3 cut(s)	214, 341, 892
SspMI	CTAG	2 cut(s)	41, 759
StyD4I	CCNGG	2 cut(s)	71, 919
StyI	CCWWGG	1 cut(s)	791
SwaI	ATTTAAAT	1 cut(s)	688
TaaI	ACNGT	1 cut(s)	729
TaiI	ACGT	2 cut(s)	515, 721
TaqI	TCGA	2 cut(s)	426, 1209
TasI	AATT	5 cut(s)	439, 646, 683, 697, 1241
TfiI	GAWTC	2 cut(s)	641, 1023
Tru1I	TTAA	9 cut(s)	120, 294, 353, 464, 549, 687, 993, 1064, 1136
Tru9I	TTAA	9 cut(s)	120, 294, 353, 464, 549, 687, 993, 1064, 1136
TscAI	CASTG	2 cut(s)	889, 1195
TseI	GCWGC	2 cut(s)	1321, 1333
TspDTI	ATGAA	3 cut(s)	161, 626, 839
TspGWI	ACGGA	1 cut(s)	1128
TspRI	CASTG	2 cut(s)	889, 1195
Tth111I	GACNNNGTC	1 cut(s)	1286
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	4 cut(s)	646, 683, 697, 1241
XceI	RCATGY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XspI	CTAG	2 cut(s)	41, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.