Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013869

Physical Location & Seq

Genomic Coordinates Reverse (-)

3184043 .. 3186693

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G043700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGAGAATAAATCGAATGTGCTGATGCAAAGATACGAGATAGGGAGAGTACTAGGTCAAGGCACTTTTGCCAAGGTTTACTATGCAAGGAGCTTGATAACTAATCAGGGTGTGGCCATTAAGGTTATTGACAAAGATAAGATTATGAAGGTTGGGCTGATGGATCAGATCAAGAGAGAAATATCTGTTATGAGACTGGTTAGGCACCCTAACATTATACACCTTTATGAGGTCATGGCCACCAAAACTAAGATATACTTTGTCATTGAATGTGCTAAAGGCGGTGAGCTGTTTAACAAGGTTGCTAAAGGAAAACTGAAGGAGGACGTTGCAAGGAAATATTTTCAGCAGCTAATCAATGCACTTGATTTCTGTCACAGTAGGGGTGTCTATCATCGGGATATAAAGCCAGAGAACTTATTGCTAGATGAGAATGATAACTTAAAAATCTCTGATTTCGGGTTAAGTGCCCTCGCTGAAAGCAAGCGCCAAGATGGTCTGCTTCATACCACCTGTGGTACTCCTGCCTATGTTGCTCCCGAAGTTATTAACAGGAGAGGCTATGATGGTGTGAAAGCTGATATTTGGTCTTGTGGGGTGGTCTTGTATGTCTTATTGGCAGGTTATCTCCCGTTTCATGATCCAAATTTGATGGAGATGTACAGGAAGATTGGCAAAGCAGAATTCAGATGCCCTAATTGGTTCTCACCAGAAGCACGTAGGCTACTGTATAAGATGTTGGATCCAAATCCCAATACTAGGGTTTCCTTAGCCAAAGTTAAGGAGAGTTCTTGGTTCAGAAAGGGAACAAACTCCAAAAATATGAAATCTGAAATAGAAAACAAGGATGTGGCTCCAATAAGTGCAGAAGCTTCTGGTCCCTCTGAGAATAGTAGTTTGGCTGCTGAGGCAAAGCAAGAACCAGTGAGACCTCCAAACTTGAATGCTTTTGATATTATCTCCCTTTCTGCTGGTTTTGATCTGTCTGGCTTGTTCGAAAAAGATTCTCTCAACAGAGAAGCAAGATTCACTTCCAGACAACCTGGCCCAGTCATCATCTCAAAGTTGGAAGAAATGGCTAAGCATCTGAAGCTCAAAGTGAAGAAGAAGGATGATGGATTGTTGAAAATGGATGCACTGAAGGAAGGTAGAATGGGGATTTTGTCCATAGATGCAGAGATATTTCAGATTACTCCAACTTTTCATCTGGTTGAGTTGAAGAAATCAAATGGAGATACATTGGAATACCAGAAGATGCTGGAGGACATAAGGCCTGCTCTGCAAGATATAGTCTGGGTTTGGCAAGGTGAGGAAGAGCAACAGCTGCAGGAGCAGCAGCAACAACTGCAACTGCAGCCACAAGAAGAACAACTAGAACAGCATCAGCCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

465

Amino Acids

52.91

Weight (kDa)

8.52

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07070 AT5G58380
fragaria_vesca	FvH4_3g40220 FvH4_3g40220
malus_domestica	MD03G1059600.v1.1 MD11G1061700.v1.1
prunus_persica	Prupe.6G043700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072431
rosa_laevigata	RLG00000036298
rosa_multiflora	Rmu_sc0008676.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008780
rosa_rugosa	Rorug05G0418100 Rorug05G0418200
rosa_samantha	Rh5AG474600 Rh5BG494700 Rh5CG518700
rosa_wichuraiana	Rw5G044070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	204
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	4 cut(s)	171, 635, 737, 750
AcoI	YGGCCR	2 cut(s)	114, 237
AcsI	RAATTY	2 cut(s)	646, 683
AcuI	CTGAAG	3 cut(s)	338, 1109, 1160
AfaI	GTAC	3 cut(s)	51, 520, 662
AfiI	CCNNNNNNNGG	2 cut(s)	229, 759
AgsI	TTSAA	4 cut(s)	269, 943, 1126, 1219
AjnI	CCWGG	1 cut(s)	1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	881, 913
AluBI	AGCT	7 cut(s)	93, 289, 352, 578, 872, 1093, 1324
AluI	AGCT	7 cut(s)	93, 289, 352, 578, 872, 1093, 1324
Alw26I	GTCTC	2 cut(s)	187, 922
AlwI	GGATC	4 cut(s)	171, 635, 737, 750
AoxI	GGCC	4 cut(s)	114, 237, 1045, 1271
ApeKI	GCWGC	6 cut(s)	349, 902, 1324, 1333, 1336, 1354
ApoI	RAATTY	2 cut(s)	646, 683
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	878, 1046
AsuHPI	GGTGA	3 cut(s)	296, 699, 1319
AsuII	TTCGAA	1 cut(s)	996
AvaII	GGWCC	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	2 cut(s)	116, 239
BamHI	GGATCC	1 cut(s)	742
BanI	GGYRCC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	906
BbvI	GCAGC	6 cut(s)	361, 889, 1311, 1345, 1348, 1366
BccI	CCATC	5 cut(s)	154, 488, 560, 646, 1109
BciT130I	CCWGG	1 cut(s)	1044
BcoDI	GTCTC	2 cut(s)	187, 922
BfaI	CTAG	4 cut(s)	53, 425, 759, 1373
BfmI	CTRYAG	2 cut(s)	1325, 1352
BfoI	RGCGCY	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	6 cut(s)	350, 903, 1325, 1334, 1337, 1355
BlpI	GCTNAGC	1 cut(s)	1080
BlsI	GCNGC	6 cut(s)	351, 904, 1326, 1335, 1338, 1356
BmcAI	AGTACT	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	1044
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	878, 1046
BmiI	GGNNCC	4 cut(s)	206, 744, 855, 880
BmrFI	CCNGG	1 cut(s)	1044
BmrI	ACTGGG	1 cut(s)	1043
BmsI	GCATC	7 cut(s)	15, 680, 1093, 1123, 1162, 1245, 1390
BmuI	ACTGGG	1 cut(s)	1043
BpmI	CTGGAG	1 cut(s)	1280
Bpu10I	CCTNAGC	2 cut(s)	769, 906
Bpu1102I	GCTNAGC	1 cut(s)	1080
Bpu14I	TTCGAA	1 cut(s)	996
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	922
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 759
Bse1I	ACTGG	3 cut(s)	201, 923, 1049
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	1044
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	3 cut(s)	853, 1117, 1138
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	2 cut(s)	229, 759
BseMII	CTCAG	2 cut(s)	876, 897
BseNI	ACTGG	3 cut(s)	201, 923, 1049
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	6 cut(s)	361, 889, 1311, 1345, 1348, 1366
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	4 cut(s)	116, 239, 1047, 1273
BshNI	GGYRCC	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	2 cut(s)	229, 759
BsmAI	GTCTC	2 cut(s)	187, 922
BsmFI	GGGAC	1 cut(s)	864
BsmI	GAATGC	1 cut(s)	949
BsnI	GGCC	4 cut(s)	116, 239, 1047, 1273
Bso31I	GGTCTC	1 cut(s)	922
Bsp119I	TTCGAA	1 cut(s)	996
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	5 cut(s)	163, 168, 640, 742, 979
Bsp1720I	GCTNAGC	1 cut(s)	1080
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	4 cut(s)	116, 239, 1047, 1273
BspCNI	CTCAG	2 cut(s)	877, 898
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	4 cut(s)	206, 744, 855, 880
BspMAI	CTGCAG	2 cut(s)	1329, 1356
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	4 cut(s)	171, 635, 737, 750
BspQI	GCTCTTC	1 cut(s)	1308
BspT104I	TTCGAA	1 cut(s)	996
BspT107I	GGYRCC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	922
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	201, 923, 1049
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	5 cut(s)	163, 168, 640, 742, 979
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	1044
Bst4CI	ACNGT	2 cut(s)	380, 729
Bst6I	CTCTTC	1 cut(s)	1308
BstAPI	GCANNNNNTGC	2 cut(s)	1324, 1345
BstAUI	TGTACA	1 cut(s)	660
BstBAI	YACGTR	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	996
BstC8I	GCNNGC	2 cut(s)	485, 1275
BstDEI	CTNAG	5 cut(s)	249, 769, 885, 906, 1080
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	3 cut(s)	853, 1117, 1138
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	5 cut(s)	166, 171, 643, 745, 982
BstMAI	GTCTC	2 cut(s)	187, 922
BstMBI	GATC	5 cut(s)	163, 168, 640, 742, 979
BstMWI	GCNNNNNNNGC	9 cut(s)	533, 908, 1090, 1279, 1324, 1330, 1333, 1345, 1354
BstNI	CCWGG	1 cut(s)	1044
BstSCI	CCNGG	1 cut(s)	1042
BstSFI	CTRYAG	2 cut(s)	1325, 1352
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	6 cut(s)	361, 889, 1311, 1345, 1348, 1366
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuRI	GGCC	4 cut(s)	116, 239, 1047, 1273
BtsCI	GGATG	3 cut(s)	853, 1117, 1138
BtsIMutI	CAGTG	2 cut(s)	930, 1136
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	2 cut(s)	485, 1275
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	2 cut(s)	878, 1046
Csp6I	GTAC	3 cut(s)	50, 519, 661
CviAII	CATG	2 cut(s)	235, 638
CviQI	GTAC	3 cut(s)	50, 519, 661
DdeI	CTNAG	5 cut(s)	249, 769, 885, 906, 1080
DpnI	GATC	5 cut(s)	165, 170, 642, 744, 981
DpnII	GATC	5 cut(s)	163, 168, 640, 742, 979
EaeI	YGGCCR	2 cut(s)	114, 237
Eam1104I	CTCTTC	1 cut(s)	1308
EarI	CTCTTC	1 cut(s)	1308
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	1273
Eco31I	GGTCTC	1 cut(s)	922
Eco47I	GGWCC	1 cut(s)	878
Eco57I	CTGAAG	3 cut(s)	338, 1109, 1160
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	1042
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	238, 641
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 1015, 1047
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	2 cut(s)	234, 637
Fnu4HI	GCNGC	6 cut(s)	350, 903, 1325, 1334, 1337, 1355
FokI	GGATG	3 cut(s)	860, 1124, 1145
Fsp4HI	GCNGC	6 cut(s)	350, 903, 1325, 1334, 1337, 1355
FspBI	CTAG	4 cut(s)	53, 425, 759, 1373
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	6 cut(s)	350, 903, 1325, 1334, 1337, 1355
GsuI	CTGGAG	1 cut(s)	1280
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	4 cut(s)	116, 239, 1047, 1273
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	2 cut(s)	238, 641
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	870
HinfI	GANTC	2 cut(s)	1004, 1026
HphI	GGTGA	3 cut(s)	296, 699, 1319
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	8 cut(s)	168, 454, 689, 800, 832, 886, 1089, 1188
Hpy188III	TCNNGA	5 cut(s)	172, 398, 539, 638, 1035
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	142, 313, 1102, 1135, 1139
HpyCH4III	ACNGT	2 cut(s)	380, 729
HpyCH4IV	ACGT	2 cut(s)	327, 718
HpyF10VI	GCNNNNNNNGC	9 cut(s)	533, 908, 1090, 1279, 1324, 1330, 1333, 1345, 1354
HpyF3I	CTNAG	5 cut(s)	249, 769, 885, 906, 1080
HpySE526I	ACGT	2 cut(s)	327, 718
Hsp92II	CATG	2 cut(s)	238, 641
HspAI	GCGC	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	163, 168, 640, 742, 979
LguI	GCTCTTC	1 cut(s)	1308
LmnI	GCTCC	4 cut(s)	90, 541, 859, 1330
Lsp1109I	GCAGC	6 cut(s)	361, 889, 1311, 1345, 1348, 1366
LweI	GCATC	7 cut(s)	15, 680, 1093, 1123, 1162, 1245, 1390
MaeI	CTAG	4 cut(s)	53, 425, 759, 1373
MaeII	ACGT	2 cut(s)	327, 718
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	5 cut(s)	165, 170, 642, 744, 981
MboI	GATC	5 cut(s)	163, 168, 640, 742, 979
MboII	GAAGA	8 cut(s)	679, 1082, 1114, 1117, 1231, 1264, 1325, 1376
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	472
MlsI	TGGCCA	2 cut(s)	116, 239
MluCI	AATT	3 cut(s)	646, 683, 697
MluNI	TGGCCA	2 cut(s)	116, 239
MmeI	TCCRAC	3 cut(s)	720, 1047, 1220
MnlI	CCTC	9 cut(s)	223, 316, 482, 551, 892, 901, 942, 1255, 1303
Mox20I	TGGCCA	2 cut(s)	116, 239
MscI	TGGCCA	2 cut(s)	116, 239
MseI	TTAA	6 cut(s)	120, 294, 443, 464, 549, 780
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	2 cut(s)	116, 239
MspA1I	CMGCKG	1 cut(s)	1324
MspR9I	CCNGG	1 cut(s)	1044
Mva1269I	GAATGC	1 cut(s)	949
MvaI	CCWGG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	9 cut(s)	533, 908, 1090, 1279, 1324, 1330, 1333, 1345, 1354
NdeII	GATC	5 cut(s)	163, 168, 640, 742, 979
NlaIII	CATG	2 cut(s)	238, 641
NlaIV	GGNNCC	4 cut(s)	206, 744, 855, 880
NmuCI	GTSAC	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	996
PagI	TCATGA	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	1273
PciSI	GCTCTTC	1 cut(s)	1308
PctI	GAATGC	1 cut(s)	949
PfeI	GAWTC	2 cut(s)	1004, 1026
PkrI	GCNGC	6 cut(s)	351, 904, 1326, 1335, 1338, 1356
Ppu21I	YACGTR	1 cut(s)	719
Psp6I	CCWGG	1 cut(s)	1042
PspGI	CCWGG	1 cut(s)	1042
PspN4I	GGNNCC	4 cut(s)	206, 744, 855, 880
PspPI	GGNCC	2 cut(s)	878, 1046
PstI	CTGCAG	2 cut(s)	1329, 1356
PsuI	RGATCY	1 cut(s)	742
PvuII	CAGCTG	1 cut(s)	1324
RsaI	GTAC	3 cut(s)	51, 520, 662
RsaNI	GTAC	3 cut(s)	50, 519, 661
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	1308
SaqAI	TTAA	6 cut(s)	120, 294, 443, 464, 549, 780
SatI	GCNGC	6 cut(s)	350, 903, 1325, 1334, 1337, 1355
Sau3AI	GATC	5 cut(s)	163, 168, 640, 742, 979
Sau96I	GGNCC	2 cut(s)	878, 1046
ScaI	AGTACT	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	1044
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	7 cut(s)	15, 680, 1093, 1123, 1162, 1245, 1390
SfcI	CTRYAG	2 cut(s)	1325, 1352
SfuI	TTCGAA	1 cut(s)	996
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	646, 683, 697
SseBI	AGGCCT	1 cut(s)	1273
SsiI	CCGC	1 cut(s)	282
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	4 cut(s)	53, 425, 759, 1373
StuI	AGGCCT	1 cut(s)	1273
StyD4I	CCNGG	1 cut(s)	1042
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	380, 729
TaiI	ACGT	2 cut(s)	330, 721
TaqI	TCGA	2 cut(s)	14, 996
TasI	AATT	3 cut(s)	646, 683, 697
TatI	WGTACW	2 cut(s)	49, 660
TfiI	GAWTC	2 cut(s)	1004, 1026
Tru1I	TTAA	6 cut(s)	120, 294, 443, 464, 549, 780
Tru9I	TTAA	6 cut(s)	120, 294, 443, 464, 549, 780
TscAI	CASTG	2 cut(s)	930, 1143
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	6 cut(s)	349, 902, 1324, 1333, 1336, 1354
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	5 cut(s)	161, 494, 626, 839, 1193
TspRI	CASTG	2 cut(s)	930, 1143
VpaK11BI	GGWCC	1 cut(s)	878
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	646, 683
XspI	CTAG	4 cut(s)	53, 425, 759, 1373
ZrmI	AGTACT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.