Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008676.1

Orthogroup ID

OG0013869

Physical Location & Seq

Genomic Coordinates Forward (+)

8317 .. 10132

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008676.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

atgtgcctaacctctccgaactccgattcacaactccataaggttgtagcttcaacagagctacgcttcagttttcttgctggtgtaaattacagtaggtttggtcttgatacccaacagcaggatgatcccacaagtaggtatgccatgccggttgtgttgatgcacgaccattgtgaagacgggagacagctgggtaaaggcacctttgccaaggtttattatgcaaggagcttgataactaatcaggctgtggctatcaaggttattgacaaagagaagattatgaaggtagggctgatggatcagataaagcgagagatatctgttatgcgactagttagacaccccaatatcatacacctttatgaggtcttggcgaccaaaactaagatatactttgtcattgagtatgcaaaaggcggtgagctatttaacaaggtggctaaaggaaagctgaaggaggatgttgcacggaaatatttccagcagctgataaatgcacttgatttctgtcatagcaggggagtttatcaccgggatattaaaccagagaacttattgctagatgagaatgataatctgaagatctctgattttgggttaagtgcccttgcggaaagcaagcgccaagatggtctgcttcataccacttgtggtactcctgcctatgttgctccagaagttattaatcggaaaggctatgatggtgtgaaagctgatgtttggtcttgtggggtggtcttgtatgtcttattggctggttatctcccatttcatgattcaaatttgatggagatgtacaggaaaattggtaaagcagagttcagatgtccaaattggttctcaccagaagcacgtaggcttttgtgcaagatgttggatccaaatcccaatactagaatttccttagccaaagttagggacagttcttggttcagaagaggaccaaaatccaaagagaaagaggtggctccggcaggaacagaagcttcaagccccagtgagaataatatggctgctgaggaaaacgaggagtcagggagaccttcaaacttgaatgcttttgatattatatccctttctgatgggtttgatctgtctggcttgttcgaaaaaaatcctctaaatagggaagcaagattcacttcaagagagcctgcccgagtcatcatctccaagatagaagaaatggctaagcatctgaagctaaaagtgaaaaagaaggatcatggattgttgaaaatggatcgattggaggaaggcagaaaggggtttttgtccattgatgcagagatatttgagatcactccaacttttcatttggtagaggtcaagaaatcaaatggagatacattggagtaccagaagatgttggaggacatgaggcctgctctgcaagatattgtctgggtttggcaaggtgagcaagaacagacatcgcaggagcagcagcaacatgaacaagaagaactgccacagaatcagccacaattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

499

Amino Acids

56.93

Weight (kDa)

7.21

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07070 AT5G58380
fragaria_vesca	FvH4_3g40220 FvH4_3g40220
malus_domestica	MD03G1059600.v1.1 MD11G1061700.v1.1
prunus_persica	Prupe.6G043700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072431
rosa_laevigata	RLG00000036298
rosa_multiflora	Rmu_sc0008676.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008780
rosa_rugosa	Rorug05G0418100 Rorug05G0418200
rosa_samantha	Rh5AG474600 Rh5BG494700 Rh5CG518700
rosa_wichuraiana	Rw5G044070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AciI	CCGC	2 cut(s)	423, 617
AclWI	GGATC	6 cut(s)	122, 312, 878, 891, 1236, 1257
AcsI	RAATTY	2 cut(s)	787, 903
AcuI	CTGAAG	4 cut(s)	52, 479, 605, 1226
AfaI	GTAC	3 cut(s)	661, 803, 1364
AfiI	CCNNNNNNNGG	4 cut(s)	121, 138, 370, 921
AgsI	TTSAA	7 cut(s)	54, 786, 996, 1053, 1060, 1152, 1243
AhlI	ACTAGT	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	181, 1039
AlwI	GGATC	6 cut(s)	122, 312, 878, 891, 1236, 1257
AlwNI	CAGNNNCTG	1 cut(s)	493
Ama87I	CYCGRG	1 cut(s)	1164
AoxI	GGCC	1 cut(s)	1388
ApeKI	GCWGC	4 cut(s)	490, 1019, 1450, 1453
ApoI	RAATTY	2 cut(s)	787, 903
AseI	ATTAAT	1 cut(s)	690
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	947
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	4 cut(s)	437, 527, 840, 1436
AsuII	TTCGAA	1 cut(s)	1113
AvaI	CYCGRG	1 cut(s)	1164
AvaII	GGWCC	1 cut(s)	947
BaeGI	GKGCMC	1 cut(s)	613
BamHI	GGATCC	1 cut(s)	883
BanI	GGYRCC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	1023
BbvI	GCAGC	4 cut(s)	502, 1006, 1462, 1465
BccI	CCATC	5 cut(s)	295, 629, 701, 787, 1082
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	181, 1039
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	3 cut(s)	338, 566, 900
BfoI	RGCGCY	1 cut(s)	631
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	4 cut(s)	491, 1020, 1451, 1454
BlpI	GCTNAGC	1 cut(s)	1197
BlsI	GCNGC	4 cut(s)	492, 1021, 1452, 1455
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	947
BmeT110I	CYCGRG	1 cut(s)	1164
BmgT120I	GGNCC	1 cut(s)	947
BmiI	GGNNCC	3 cut(s)	205, 885, 975
BmrFI	CCNGG	1 cut(s)	539
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	3 cut(s)	153, 1210, 1279
BmuI	ACTGGG	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	1378, 1410
BpmI	CTGGAG	1 cut(s)	663
Bpu10I	CCTNAGC	2 cut(s)	910, 1023
Bpu1102I	GCTNAGC	1 cut(s)	1197
Bpu14I	TTCGAA	1 cut(s)	1113
BpuMI	CCSGG	1 cut(s)	539
Bsa29I	ATCGAT	1 cut(s)	1252
BsaAI	YACGTR	1 cut(s)	860
BsaBI	GATNNNNATC	1 cut(s)	888
BsaI	GGTCTC	1 cut(s)	1039
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 138, 370, 921
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	1002
Bse8I	GATNNNNATC	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	1252
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	130, 472
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	4 cut(s)	121, 138, 370, 921
BseMII	CTCAG	1 cut(s)	1014
BseNI	ACTGG	1 cut(s)	1002
BseRI	GAGGAG	1 cut(s)	1049
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	4 cut(s)	502, 1006, 1462, 1465
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	1390
BshNI	GGYRCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	1252
BsiHKCI	CYCGRG	1 cut(s)	1164
BsiSI	CCGG	3 cut(s)	152, 538, 977
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	4 cut(s)	121, 138, 370, 921
BsmAI	GTCTC	2 cut(s)	181, 1039
BsmFI	GGGAC	1 cut(s)	938
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	1 cut(s)	1390
Bso31I	GGTCTC	1 cut(s)	1039
BsoBI	CYCGRG	1 cut(s)	1164
Bsp119I	TTCGAA	1 cut(s)	1113
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	8 cut(s)	127, 304, 588, 883, 1096, 1228, 1249, 1305
Bsp1720I	GCTNAGC	1 cut(s)	1197
BspACI	CCGC	2 cut(s)	423, 617
BspANI	GGCC	1 cut(s)	1390
BspCNI	CTCAG	1 cut(s)	1015
BspDI	ATCGAT	1 cut(s)	1252
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	3 cut(s)	205, 885, 975
BspPI	GGATC	6 cut(s)	122, 312, 878, 891, 1236, 1257
BspT104I	TTCGAA	1 cut(s)	1113
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	1039
BsrFI	RCCGGY	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	1 cut(s)	1002
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	8 cut(s)	127, 304, 588, 883, 1096, 1228, 1249, 1305
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	95, 929
Bst6I	CTCTTC	1 cut(s)	937
BstAUI	TGTACA	1 cut(s)	801
BstBAI	YACGTR	1 cut(s)	860
BstBI	TTCGAA	1 cut(s)	1113
BstC8I	GCNNGC	3 cut(s)	626, 1161, 1392
BstDEI	CTNAG	4 cut(s)	390, 910, 1023, 1197
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	130, 472
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	8 cut(s)	130, 307, 591, 886, 1099, 1231, 1252, 1308
BstMAI	GTCTC	2 cut(s)	181, 1039
BstMBI	GATC	8 cut(s)	127, 304, 588, 883, 1096, 1228, 1249, 1305
BstMWI	GCNNNNNNNGC	5 cut(s)	674, 1207, 1396, 1426, 1450
BstSCI	CCNGG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	613
BstV1I	GCAGC	4 cut(s)	502, 1006, 1462, 1465
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	588, 883
BstYI	RGATCY	2 cut(s)	588, 883
Bsu15I	ATCGAT	1 cut(s)	1252
BsuRI	GGCC	1 cut(s)	1390
BsuTUI	ATCGAT	1 cut(s)	1252
BtgZI	GCGATG	1 cut(s)	1425
BtsCI	GGATG	2 cut(s)	130, 472
BtsIMutI	CAGTG	1 cut(s)	1009
Cac8I	GCNNGC	3 cut(s)	626, 1161, 1392
CaiI	CAGNNNCTG	1 cut(s)	493
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	947
ClaI	ATCGAT	1 cut(s)	1252
Csp6I	GTAC	3 cut(s)	660, 802, 1363
CviAII	CATG	5 cut(s)	148, 779, 1232, 1384, 1460
CviQI	GTAC	3 cut(s)	660, 802, 1363
DdeI	CTNAG	4 cut(s)	390, 910, 1023, 1197
DpnI	GATC	8 cut(s)	129, 306, 590, 885, 1098, 1230, 1251, 1307
DpnII	GATC	8 cut(s)	127, 304, 588, 883, 1096, 1228, 1249, 1305
Eam1104I	CTCTTC	1 cut(s)	937
EarI	CTCTTC	1 cut(s)	937
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	1390
Eco31I	GGTCTC	1 cut(s)	1039
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	947
Eco57I	CTGAAG	4 cut(s)	52, 479, 605, 1226
Eco88I	CYCGRG	1 cut(s)	1164
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	5 cut(s)	151, 782, 1235, 1387, 1463
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 1132, 1164
FaqI	GGGAC	1 cut(s)	938
FatI	CATG	5 cut(s)	147, 778, 1231, 1383, 1459
Fnu4HI	GCNGC	4 cut(s)	491, 1020, 1451, 1454
FokI	GGATG	2 cut(s)	137, 479
Fsp4HI	GCNGC	4 cut(s)	491, 1020, 1451, 1454
FspBI	CTAG	3 cut(s)	338, 566, 900
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	4 cut(s)	491, 1020, 1451, 1454
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	663
HaeII	RGCGCY	1 cut(s)	631
HaeIII	GGCC	1 cut(s)	1390
HapII	CCGG	3 cut(s)	152, 538, 977
HhaI	GCGC	1 cut(s)	630
Hin1II	CATG	5 cut(s)	151, 782, 1235, 1387, 1463
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	990
HinfI	GANTC	6 cut(s)	26, 782, 1037, 1143, 1167, 1483
HpaII	CCGG	3 cut(s)	152, 538, 977
HphI	GGTGA	4 cut(s)	437, 527, 840, 1436
Hpy188III	TCNNGA	5 cut(s)	107, 680, 779, 1152, 1336
HpyAV	CCTTC	5 cut(s)	283, 454, 1059, 1219, 1256
HpyCH4III	ACNGT	2 cut(s)	95, 929
HpyCH4IV	ACGT	1 cut(s)	859
HpyCH4V	TGCA	8 cut(s)	166, 227, 416, 473, 503, 873, 1292, 1399
HpyF10VI	GCNNNNNNNGC	5 cut(s)	674, 1207, 1396, 1426, 1450
HpyF3I	CTNAG	4 cut(s)	390, 910, 1023, 1197
HpySE526I	ACGT	1 cut(s)	859
Hsp92II	CATG	5 cut(s)	151, 782, 1235, 1387, 1463
HspAI	GCGC	1 cut(s)	628
Kzo9I	GATC	8 cut(s)	127, 304, 588, 883, 1096, 1228, 1249, 1305
LmnI	GCTCC	4 cut(s)	231, 682, 979, 1447
Lsp1109I	GCAGC	4 cut(s)	502, 1006, 1462, 1465
LweI	GCATC	3 cut(s)	153, 1210, 1279
MaeI	CTAG	3 cut(s)	338, 566, 900
MaeII	ACGT	1 cut(s)	859
MalI	GATC	8 cut(s)	129, 306, 590, 885, 1098, 1230, 1251, 1307
MboI	GATC	8 cut(s)	127, 304, 588, 883, 1096, 1228, 1249, 1305
MboII	GAAGA	7 cut(s)	191, 292, 598, 954, 1199, 1381, 1481
MflI	RGATCY	2 cut(s)	588, 883
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	6 cut(s)	88, 787, 810, 838, 903, 1493
MlyI	GAGTC	2 cut(s)	1046, 1176
MmeI	TCCRAC	3 cut(s)	861, 1337, 1356
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	4 cut(s)	435, 546, 605, 690
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	193, 493
MspI	CCGG	3 cut(s)	152, 538, 977
MspR9I	CCNGG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	1066
MwoI	GCNNNNNNNGC	5 cut(s)	674, 1207, 1396, 1426, 1450
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	8 cut(s)	127, 304, 588, 883, 1096, 1228, 1249, 1305
NlaIII	CATG	5 cut(s)	151, 782, 1235, 1387, 1463
NlaIV	GGNNCC	3 cut(s)	205, 885, 975
NspV	TTCGAA	1 cut(s)	1113
PagI	TCATGA	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	1390
PctI	GAATGC	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	4 cut(s)	26, 782, 1143, 1483
PkrI	GCNGC	4 cut(s)	492, 1021, 1452, 1455
PleI	GAGTC	2 cut(s)	1045, 1175
PpsI	GAGTC	2 cut(s)	1045, 1175
Ppu21I	YACGTR	1 cut(s)	860
PshBI	ATTAAT	1 cut(s)	690
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	205, 885, 975
PspPI	GGNCC	1 cut(s)	947
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	588, 883
PvuII	CAGCTG	2 cut(s)	193, 493
RsaI	GTAC	3 cut(s)	661, 803, 1364
RsaNI	GTAC	3 cut(s)	660, 802, 1363
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	435, 546, 605, 690
SatI	GCNGC	4 cut(s)	491, 1020, 1451, 1454
Sau3AI	GATC	8 cut(s)	127, 304, 588, 883, 1096, 1228, 1249, 1305
Sau96I	GGNCC	1 cut(s)	947
SchI	GAGTC	2 cut(s)	1046, 1176
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	3 cut(s)	153, 1210, 1279
SfuI	TTCGAA	1 cut(s)	1113
SinI	GGWCC	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	366
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	6 cut(s)	88, 787, 810, 838, 903, 1493
SseBI	AGGCCT	1 cut(s)	1390
SsiI	CCGC	2 cut(s)	423, 617
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	3 cut(s)	338, 566, 900
StuI	AGGCCT	1 cut(s)	1390
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	95, 929
TaiI	ACGT	1 cut(s)	862
TaqI	TCGA	2 cut(s)	1113, 1252
TasI	AATT	6 cut(s)	88, 787, 810, 838, 903, 1493
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	4 cut(s)	26, 782, 1143, 1483
Tru1I	TTAA	4 cut(s)	435, 546, 605, 690
Tru9I	TTAA	4 cut(s)	435, 546, 605, 690
TscAI	CASTG	1 cut(s)	1009
TseI	GCWGC	4 cut(s)	490, 1019, 1450, 1453
TspDTI	ATGAA	5 cut(s)	302, 635, 767, 1310, 1476
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	1 cut(s)	1009
VpaK11BI	GGWCC	1 cut(s)	947
VspI	ATTAAT	1 cut(s)	690
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	2 cut(s)	787, 903
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	3 cut(s)	338, 566, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.