Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013869

Physical Location & Seq

Genomic Coordinates Forward (+)

58133646 .. 58134587

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0418200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGCCCAAGTTCGATCCCTCCCAGGTCGTCGAGGTCTACGTCCGCGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCGCTGGCTCCCAAGATCGGTCCTCTCGGTCTCTCCCCAAAGAAGATCGGAGAAGACATCGCAAAAGAGACCGCCAAGGACTGGAAGGGTCTGCGCGTAACTGTCAAGCTTACCGTCCAGAACCGTCAGGCGAAGGTCTCGGTGGTCCCCTCCGCCGCCGCCCTGGTCATCAAGGCCCTCAAGGAGCCGGAGCGCGACCGCAAGAAGGTCAAGAACATCAAGCACAGCGGCAACATCAGCCTCGACGATGTGATCGAAATCGCCAAGATCATGAAGAACCGCTCGATGGCGAAGGATCTCAGTGGTACCGTGAAAGAGATCCTGGGTACCTGCGTCTCCGTGGGCTGCACCGTCGACGGCAAGGATCCGAAGGACCTGCAGCAGGAGATCACAGATGGCGATGTCGAGGTCCCACTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

166

Amino Acids

17.78

Weight (kDa)

9.0

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	8.4e-20	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	6.7e-21	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07070 AT5G58380
fragaria_vesca	FvH4_3g40220 FvH4_3g40220
malus_domestica	MD03G1059600.v1.1 MD11G1061700.v1.1
prunus_persica	Prupe.6G043700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072431
rosa_laevigata	RLG00000036298
rosa_multiflora	Rmu_sc0008676.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008780
rosa_rugosa	Rorug05G0418100 Rorug05G0418200
rosa_samantha	Rh5AG474600 Rh5BG494700 Rh5CG518700
rosa_wichuraiana	Rw5G044070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	416, 462
Acc65I	GGTACC	2 cut(s)	383, 404
AccB1I	GGYRCC	3 cut(s)	68, 383, 404
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	360
AccI	GTMKAC	2 cut(s)	39, 432
AccII	CGCG	3 cut(s)	48, 174, 273
AclWI	GGATC	5 cut(s)	11, 381, 391, 437, 450
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	385, 406
AfiI	CCNNNNNNNGG	5 cut(s)	95, 159, 283, 364, 460
AjnI	CCWGG	3 cut(s)	24, 240, 399
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	4 cut(s)	113, 140, 220, 418
AlwI	GGATC	5 cut(s)	11, 381, 391, 437, 450
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	423, 457
Asp718I	GGTACC	2 cut(s)	383, 404
AspLEI	GCGC	3 cut(s)	71, 174, 273
AspS9I	GGNCC	5 cut(s)	98, 223, 253, 451, 487
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	4 cut(s)	98, 223, 451, 487
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	3 cut(s)	68, 383, 404
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	410, 469
BccI	CCATC	2 cut(s)	358, 467
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BciT130I	CCWGG	3 cut(s)	26, 242, 401
BcoDI	GTCTC	4 cut(s)	113, 140, 220, 418
BfmI	CTRYAG	1 cut(s)	455
BfoI	RGCGCY	1 cut(s)	72
BfuAI	ACCTGC	2 cut(s)	416, 462
BisI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
BlsI	GCNGC	7 cut(s)	6, 73, 235, 238, 308, 425, 459
Bme1390I	CCNGG	3 cut(s)	26, 242, 401
Bme18I	GGWCC	4 cut(s)	98, 223, 451, 487
BmgT120I	GGNCC	5 cut(s)	98, 223, 253, 451, 487
BmiI	GGNNCC	8 cut(s)	70, 87, 225, 264, 385, 406, 444, 489
BmrFI	CCNGG	3 cut(s)	26, 242, 401
BpiI	GAAGAC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	3 cut(s)	113, 140, 220
BsaJI	CCNNGG	5 cut(s)	24, 153, 240, 400, 417
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 159, 283, 364, 460
Bse1I	ACTGG	2 cut(s)	75, 164
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	3 cut(s)	26, 242, 401
BseDI	CCNNGG	5 cut(s)	24, 153, 240, 400, 417
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	5 cut(s)	95, 159, 283, 364, 460
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	75, 164
BseXI	GCAGC	2 cut(s)	410, 469
BsgI	GTGCAG	1 cut(s)	409
Bsh1236I	CGCG	3 cut(s)	48, 174, 273
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	3 cut(s)	68, 383, 404
BsiEI	CGRYCG	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	54, 266
BslFI	GGGAC	2 cut(s)	209, 473
BslI	CCNNNNNNNGG	5 cut(s)	95, 159, 283, 364, 460
BsmAI	GTCTC	4 cut(s)	113, 140, 220, 418
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	2 cut(s)	209, 473
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	3 cut(s)	113, 140, 220
Bsp143I	GATC	9 cut(s)	16, 93, 123, 330, 345, 373, 396, 442, 465
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	390
BspFNI	CGCG	3 cut(s)	48, 174, 273
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	8 cut(s)	70, 87, 225, 264, 385, 406, 444, 489
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	2 cut(s)	416, 462
BspPI	GGATC	5 cut(s)	11, 381, 391, 437, 450
BspT107I	GGYRCC	3 cut(s)	68, 383, 404
BspTNI	GGTCTC	3 cut(s)	113, 140, 220
BsrBI	CCGCTC	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	75, 164
BssECI	CCNNGG	5 cut(s)	24, 153, 240, 400, 417
BssMI	GATC	9 cut(s)	16, 93, 123, 330, 345, 373, 396, 442, 465
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	26, 242, 401
Bst4CI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	377
BstDSI	CCRYGG	1 cut(s)	417
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstFNI	CGCG	3 cut(s)	48, 174, 273
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	71, 174, 273
BstKTI	GATC	9 cut(s)	19, 96, 126, 333, 348, 376, 399, 445, 468
BstMAI	GTCTC	4 cut(s)	113, 140, 220, 418
BstMBI	GATC	9 cut(s)	16, 93, 123, 330, 345, 373, 396, 442, 465
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 315
BstNI	CCWGG	3 cut(s)	26, 242, 401
BstSCI	CCNGG	3 cut(s)	24, 240, 399
BstSFI	CTRYAG	1 cut(s)	455
BstUI	CGCG	3 cut(s)	48, 174, 273
BstV1I	GCAGC	2 cut(s)	410, 469
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	3 cut(s)	373, 396, 442
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	3 cut(s)	373, 396, 442
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	417
BtgZI	GCGATG	2 cut(s)	121, 492
BtsIMutI	CAGTG	1 cut(s)	385
BveI	ACCTGC	2 cut(s)	416, 462
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	3 cut(s)	71, 174, 273
Cfr13I	GGNCC	5 cut(s)	98, 223, 253, 451, 487
CseI	GACGC	2 cut(s)	37, 400
Csp6I	GTAC	2 cut(s)	384, 405
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	6 cut(s)	86, 187, 254, 265, 318, 423
CviKI_1	RGCY	6 cut(s)	86, 187, 254, 265, 318, 423
CviQI	GTAC	2 cut(s)	384, 405
DdeI	CTNAG	1 cut(s)	377
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	9 cut(s)	18, 95, 125, 332, 347, 375, 398, 444, 467
DpnII	GATC	9 cut(s)	16, 93, 123, 330, 345, 373, 396, 442, 465
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	3 cut(s)	113, 140, 220
Eco47I	GGWCC	4 cut(s)	98, 223, 451, 487
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoO109I	RGGNCCY	3 cut(s)	253, 451, 487
EcoRII	CCWGG	3 cut(s)	24, 240, 399
EcoT14I	CCWWGG	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	1 cut(s)	352
FaiI	YATR	1 cut(s)	350
FaqI	GGGAC	2 cut(s)	209, 473
FatI	CATG	1 cut(s)	348
FblI	GTMKAC	2 cut(s)	39, 432
Fnu4HI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
Fsp4HI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
GlaI	GCGC	3 cut(s)	70, 173, 272
GluI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	2 cut(s)	54, 266
HgaI	GACGC	2 cut(s)	37, 400
HhaI	GCGC	3 cut(s)	71, 174, 273
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	3 cut(s)	69, 172, 271
HinP1I	GCGC	3 cut(s)	69, 172, 271
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	185
HpaII	CCGG	2 cut(s)	54, 266
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	40, 433
Hpy188I	TCNGA	2 cut(s)	128, 447
Hpy188III	TCNNGA	3 cut(s)	196, 289, 349
Hpy8I	GTNNAC	2 cut(s)	40, 433
Hpy99I	CGWCG	4 cut(s)	35, 326, 434, 437
HpyAV	CCTTC	5 cut(s)	157, 205, 277, 364, 442
HpyCH4III	ACNGT	5 cut(s)	181, 193, 203, 388, 430
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	426, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 315
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	3 cut(s)	69, 172, 271
KasI	GGCGCC	1 cut(s)	68
KpnI	GGTACC	2 cut(s)	387, 408
Kzo9I	GATC	9 cut(s)	16, 93, 123, 330, 345, 373, 396, 442, 465
LmnI	GCTCC	3 cut(s)	91, 262, 268
Lsp1109I	GCAGC	2 cut(s)	410, 469
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	49, 175
MalI	GATC	9 cut(s)	18, 95, 125, 332, 347, 375, 398, 444, 467
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	9 cut(s)	16, 93, 123, 330, 345, 373, 396, 442, 465
MboII	GAAGA	3 cut(s)	133, 143, 364
MflI	RGATCY	3 cut(s)	373, 396, 442
Mly113I	GGCGCC	1 cut(s)	69
MnlI	CCTC	9 cut(s)	28, 31, 50, 55, 111, 238, 266, 329, 478
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	2 cut(s)	54, 266
MspR9I	CCNGG	3 cut(s)	26, 242, 401
MvaI	CCWGG	3 cut(s)	26, 242, 401
MvnI	CGCG	3 cut(s)	48, 174, 273
MwoI	GCNNNNNNNGC	2 cut(s)	66, 315
NarI	GGCGCC	1 cut(s)	69
NdeII	GATC	9 cut(s)	16, 93, 123, 330, 345, 373, 396, 442, 465
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	8 cut(s)	70, 87, 225, 264, 385, 406, 444, 489
NmuCI	GTSAC	1 cut(s)	49
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 330
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	7 cut(s)	6, 73, 235, 238, 308, 425, 459
PluTI	GGCGCC	1 cut(s)	72
PpuMI	RGGWCCY	2 cut(s)	451, 487
Psp5II	RGGWCCY	2 cut(s)	451, 487
Psp6I	CCWGG	3 cut(s)	24, 240, 399
PspGI	CCWGG	3 cut(s)	24, 240, 399
PspN4I	GGNNCC	8 cut(s)	70, 87, 225, 264, 385, 406, 444, 489
PspPI	GGNCC	5 cut(s)	98, 223, 253, 451, 487
PspPPI	RGGWCCY	2 cut(s)	451, 487
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	3 cut(s)	373, 396, 442
RsaI	GTAC	2 cut(s)	385, 406
RsaNI	GTAC	2 cut(s)	384, 405
SalI	GTCGAC	1 cut(s)	431
SatI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
Sau3AI	GATC	9 cut(s)	16, 93, 123, 330, 345, 373, 396, 442, 465
Sau96I	GGNCC	5 cut(s)	98, 223, 253, 451, 487
ScrFI	CCNGG	3 cut(s)	26, 242, 401
SfcI	CTRYAG	1 cut(s)	455
SfoI	GGCGCC	1 cut(s)	70
SgrDI	CGTCGACG	1 cut(s)	431
SinI	GGWCC	4 cut(s)	98, 223, 451, 487
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SspDI	GGCGCC	1 cut(s)	68
StyD4I	CCNGG	3 cut(s)	24, 240, 399
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	8 cut(s)	15, 33, 321, 333, 362, 432, 483, 495
TaqII	GACCGA	2 cut(s)	86, 95
TauI	GCSGC	5 cut(s)	7, 74, 236, 239, 309
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	423, 457
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	385
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	4 cut(s)	98, 223, 451, 487
XagI	CCTNNNNNAGG	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	39, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.