Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013869

Physical Location & Seq

Genomic Coordinates Reverse (-)

58124744 .. 58127218

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0418100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGACTAGTAAAACCTACTACGCTAGGCCGAACTACCGGTACCTCCCGACCGATCACCACCACCAGACACTGGGCGCCGACTCGGCATTCGAACTCGACGAGTCCGACATCTACAACTTCGCCCGGTCCAGCTCGCCGGAGTACCGCAAGCCGGCGATGAGCTCCCGCGTCGTCTCCTCGGCGGCGTCCAAGAAGTCCGCCTCGTCCAAGCGCTCCGACGCCGGCGACCGGAACGGCGGGACCGCGGCGTCGCTGCCGGTGGGCATTCCGGACTGGTCCAAGATCCTGAGGGACGAGTACCGAGAAAACCGGCGGAGCGGCGACGACGACGACGACTTGGACGACGGGAGCGTGCGGGTCCCGCCGCACGAGTTTTTGGCGAGGCAGATGGCGAGGACGAGAATCGCGTCGTTCTCGGTTCACGAAGGCGTGGGGAGGACGCTGAAGGGGAGGGATCTCAGCCGGGTCAGAAATGCAATTTGGGAAAAAACCGGGTTCGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

169

Amino Acids

18.93

Weight (kDa)

7.99

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Senescence_reg	PF04520	20 - 169	3e-41	Senescence regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07070 AT5G58380
fragaria_vesca	FvH4_3g40220 FvH4_3g40220
malus_domestica	MD03G1059600.v1.1 MD11G1061700.v1.1
prunus_persica	Prupe.6G043700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072431
rosa_laevigata	RLG00000036298
rosa_multiflora	Rmu_sc0008676.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008780
rosa_rugosa	Rorug05G0418100 Rorug05G0418200
rosa_samantha	Rh5AG474600 Rh5BG494700 Rh5CG518700
rosa_wichuraiana	Rw5G044070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
Acc65I	GGTACC	1 cut(s)	42
AccB1I	GGYRCC	2 cut(s)	42, 77
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	321
AccII	CGCG	3 cut(s)	171, 248, 410
AccIII	TCCGGA	1 cut(s)	271
AclWI	GGATC	2 cut(s)	280, 465
AcuI	CTGAAG	1 cut(s)	467
AcyI	GRCGYC	4 cut(s)	78, 188, 222, 251
AfaI	GTAC	3 cut(s)	44, 146, 302
AfeI	AGCGCT	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	73, 154, 231
AgeI	ACCGGT	1 cut(s)	39
AhlI	ACTAGT	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	2 cut(s)	466, 498
AluBI	AGCT	2 cut(s)	135, 165
AluI	AGCT	2 cut(s)	135, 165
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	280, 465
AlwNI	CAGNNNCTG	1 cut(s)	73
Aor13HI	TCCGGA	1 cut(s)	271
Aor51HI	AGCGCT	1 cut(s)	215
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	256
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AsiGI	ACCGGT	1 cut(s)	39
Asp718I	GGTACC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	80, 216
AspS9I	GGNCC	4 cut(s)	129, 243, 279, 361
AsuC2I	CCSGG	3 cut(s)	127, 467, 496
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	2 cut(s)	93, 501
AvaII	GGWCC	4 cut(s)	129, 243, 279, 361
AxyI	CCTNAGG	1 cut(s)	290
BanI	GGYRCC	2 cut(s)	42, 77
BanII	GRGCYC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	3 cut(s)	127, 467, 496
BcoDI	GTCTC	1 cut(s)	181
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 27
BfoI	RGCGCY	2 cut(s)	81, 217
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	5 cut(s)	186, 249, 257, 322, 368
BlsI	GCNGC	5 cut(s)	187, 250, 258, 323, 369
Bme1390I	CCNGG	3 cut(s)	127, 467, 496
Bme18I	GGWCC	4 cut(s)	129, 243, 279, 361
BmgT120I	GGNCC	4 cut(s)	129, 243, 279, 361
BmiI	GGNNCC	5 cut(s)	44, 79, 244, 362, 363
BmrFI	CCNGG	3 cut(s)	127, 467, 496
BmrI	ACTGGG	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	83
Bpu14I	TTCGAA	2 cut(s)	93, 501
BpuMI	CCSGG	3 cut(s)	127, 467, 496
BsaHI	GRCGYC	4 cut(s)	78, 188, 222, 251
BsaJI	CCNNGG	2 cut(s)	180, 246
BsaWI	WCCGGW	3 cut(s)	39, 231, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 154, 231
Bse118I	RCCGGY	5 cut(s)	39, 154, 224, 259, 312
Bse1I	ACTGG	2 cut(s)	78, 281
Bse21I	CCTNAGG	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	180, 246
BseLI	CCNNNNNNNGG	3 cut(s)	73, 154, 231
BseMII	CTCAG	2 cut(s)	281, 475
BseNI	ACTGG	2 cut(s)	78, 281
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	243
Bsh1236I	CGCG	3 cut(s)	171, 248, 410
Bsh1285I	CGRYCG	2 cut(s)	54, 232
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	2 cut(s)	42, 77
BshTI	ACCGGT	1 cut(s)	39
BsiEI	CGRYCG	2 cut(s)	54, 232
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	3 cut(s)	256, 308, 347
BslI	CCNNNNNNNGG	3 cut(s)	73, 154, 231
BsmAI	GTCTC	1 cut(s)	181
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	3 cut(s)	256, 308, 347
BsmI	GAATGC	2 cut(s)	89, 267
BsnI	GGCC	1 cut(s)	31
Bsp119I	TTCGAA	2 cut(s)	93, 501
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	55, 285, 457
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	282, 474
BspEI	TCCGGA	1 cut(s)	271
BspFNI	CGCG	3 cut(s)	171, 248, 410
BspLI	GGNNCC	5 cut(s)	44, 79, 244, 362, 363
BspPI	GGATC	2 cut(s)	280, 465
BspT104I	TTCGAA	2 cut(s)	93, 501
BspT107I	GGYRCC	2 cut(s)	42, 77
BsrBI	CCGCTC	1 cut(s)	321
BsrFI	RCCGGY	5 cut(s)	39, 154, 224, 259, 312
BsrI	ACTGG	2 cut(s)	78, 281
BssAI	RCCGGY	5 cut(s)	39, 154, 224, 259, 312
BssECI	CCNNGG	2 cut(s)	180, 246
BssMI	GATC	3 cut(s)	55, 285, 457
BssNI	GRCGYC	4 cut(s)	78, 188, 222, 251
BssSI	CACGAG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	371
BstACI	GRCGYC	4 cut(s)	78, 188, 222, 251
BstBI	TTCGAA	2 cut(s)	93, 501
BstC8I	GCNNGC	5 cut(s)	137, 152, 156, 226, 356
BstDEI	CTNAG	2 cut(s)	290, 461
BstDSI	CCRYGG	1 cut(s)	246
BstFNI	CGCG	3 cut(s)	171, 248, 410
BstH2I	RGCGCY	2 cut(s)	81, 217
BstHHI	GCGC	2 cut(s)	80, 216
BstKTI	GATC	3 cut(s)	58, 288, 460
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	3 cut(s)	55, 285, 457
BstMCI	CGRYCG	2 cut(s)	54, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 364
BstSCI	CCNGG	3 cut(s)	125, 465, 494
BstUI	CGCG	3 cut(s)	171, 248, 410
BstV1I	GCAGC	1 cut(s)	243
BstX2I	RGATCY	2 cut(s)	285, 457
BstYI	RGATCY	2 cut(s)	285, 457
Bsu36I	CCTNAGG	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	5 cut(s)	137, 152, 156, 226, 356
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	2 cut(s)	80, 216
Cfr10I	RCCGGY	5 cut(s)	39, 154, 224, 259, 312
Cfr13I	GGNCC	4 cut(s)	129, 243, 279, 361
Cfr42I	CCGCGG	1 cut(s)	249
CseI	GACGC	6 cut(s)	160, 177, 230, 240, 399, 451
Csp6I	GTAC	3 cut(s)	43, 145, 301
CspAI	ACCGGT	1 cut(s)	39
CviJI	RGCY	5 cut(s)	31, 135, 154, 165, 465
CviKI_1	RGCY	5 cut(s)	31, 135, 154, 165, 465
CviQI	GTAC	3 cut(s)	43, 145, 301
DdeI	CTNAG	2 cut(s)	290, 461
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	3 cut(s)	57, 287, 459
DpnII	GATC	3 cut(s)	55, 285, 457
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
EciI	GGCGGA	2 cut(s)	190, 331
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	4 cut(s)	129, 243, 279, 361
Eco47III	AGCGCT	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	467
Eco81I	CCTNAGG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	167
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	181
FaqI	GGGAC	3 cut(s)	256, 308, 347
FauI	CCCGC	4 cut(s)	176, 233, 351, 372
Fnu4HI	GCNGC	5 cut(s)	186, 249, 257, 322, 368
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	5 cut(s)	186, 249, 257, 322, 368
FspBI	CTAG	2 cut(s)	9, 27
GlaI	GCGC	2 cut(s)	79, 215
GluI	GCNGC	5 cut(s)	186, 249, 257, 322, 368
HaeII	RGCGCY	2 cut(s)	81, 217
HaeIII	GGCC	1 cut(s)	31
HgaI	GACGC	6 cut(s)	160, 177, 230, 240, 399, 451
HhaI	GCGC	2 cut(s)	80, 216
Hin1I	GRCGYC	4 cut(s)	78, 188, 222, 251
Hin6I	GCGC	2 cut(s)	78, 214
HinP1I	GCGC	2 cut(s)	78, 214
HinfI	GANTC	3 cut(s)	83, 104, 405
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	3 cut(s)	109, 220, 473
Hpy188III	TCNNGA	4 cut(s)	49, 272, 289, 425
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	422, 442
HpyCH4V	TGCA	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 364
HpyF3I	CTNAG	2 cut(s)	290, 461
Hsp92I	GRCGYC	4 cut(s)	78, 188, 222, 251
HspAI	GCGC	2 cut(s)	78, 214
KasI	GGCGCC	1 cut(s)	77
KflI	GGGWCCC	1 cut(s)	361
Kpn2I	TCCGGA	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	46
KroI	GCCGGC	2 cut(s)	154, 224
KroNI	GCCGGC	2 cut(s)	156, 226
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	55, 285, 457
LmnI	GCTCC	4 cut(s)	170, 221, 318, 351
Lsp1109I	GCAGC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	9, 27
MalI	GATC	3 cut(s)	57, 287, 459
MbiI	CCGCTC	1 cut(s)	321
MboI	GATC	3 cut(s)	55, 285, 457
MflI	RGATCY	2 cut(s)	285, 457
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	480
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	77, 113
MmeI	TCCRAC	2 cut(s)	132, 243
MnlI	CCTC	8 cut(s)	56, 190, 214, 285, 378, 390, 432, 447
MreI	CGCCGGCG	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	271
MroNI	GCCGGC	2 cut(s)	154, 224
MseI	TTAA	1 cut(s)	508
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	3 cut(s)	127, 467, 496
Mva1269I	GAATGC	2 cut(s)	89, 267
MvnI	CGCG	3 cut(s)	171, 248, 410
MwoI	GCNNNNNNNGC	2 cut(s)	86, 364
NaeI	GCCGGC	2 cut(s)	156, 226
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	3 cut(s)	127, 467, 496
NdeII	GATC	3 cut(s)	55, 285, 457
NgoMIV	GCCGGC	2 cut(s)	154, 224
NlaIV	GGNNCC	5 cut(s)	44, 79, 244, 362, 363
NmeAIII	GCCGAG	2 cut(s)	65, 161
NspV	TTCGAA	2 cut(s)	93, 501
PcsI	WCGNNNNNNNCGW	6 cut(s)	99, 105, 333, 342, 351, 407
PctI	GAATGC	2 cut(s)	89, 267
PdiI	GCCGGC	2 cut(s)	156, 226
PfeI	GAWTC	1 cut(s)	405
PflMI	CCANNNNNTGG	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	187, 250, 258, 323, 369
PleI	GAGTC	2 cut(s)	77, 112
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	2 cut(s)	77, 112
PpuMI	RGGWCCY	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	361
PspN4I	GGNNCC	5 cut(s)	44, 79, 244, 362, 363
PspPI	GGNCC	4 cut(s)	129, 243, 279, 361
PspPPI	RGGWCCY	1 cut(s)	361
PsrI	GAACNNNNNNTAC	2 cut(s)	26, 58
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	285, 457
RsaI	GTAC	3 cut(s)	44, 146, 302
RsaNI	GTAC	3 cut(s)	43, 145, 301
SacI	GAGCTC	1 cut(s)	167
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	508
SatI	GCNGC	5 cut(s)	186, 249, 257, 322, 368
Sau3AI	GATC	3 cut(s)	55, 285, 457
Sau96I	GGNCC	4 cut(s)	129, 243, 279, 361
SchI	GAGTC	2 cut(s)	77, 113
ScrFI	CCNGG	3 cut(s)	127, 467, 496
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	4 cut(s)	20, 48, 137, 167
SfoI	GGCGCC	1 cut(s)	79
Sfr303I	CCGCGG	1 cut(s)	249
SfuI	TTCGAA	2 cut(s)	93, 501
SgrAI	CRCCGGYG	1 cut(s)	224
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	4 cut(s)	129, 243, 279, 361
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	1 cut(s)	480
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	9, 27
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	125, 465, 494
TaqI	TCGA	3 cut(s)	93, 99, 501
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	480
TauI	GCSGC	4 cut(s)	188, 251, 324, 370
TfiI	GAWTC	1 cut(s)	405
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	1 cut(s)	256
TspRI	CASTG	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	4 cut(s)	129, 243, 279, 361
XspI	CTAG	2 cut(s)	9, 27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.