FvH4_3g41760

THO complex subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
35008566 .. 35011897
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41760.t1

Sequence Viewer

Length: 948 bp
ATGGCGGAGACGGGAGAGGCCGCACCGTTCAAGAACCTCACCAGCCGAGAGTACCACGGCCACGATAGGAAGGTCCATTCCGTGGCCTGGAACTGCACCGGCACCAAGCTCGCGTCGGGTTCCGTCGATCAGAAAGCTCGGATTTGGCACATTGAGCCTCACGGACAAAGTAAGGCGAAAGGTGTGGAGTTGAAGGGTCACACGGATAGTGTGGATCAGCTGTGCTGGGACCCAAAGCATGCTGATTTAGTTGCCACTGCCTCCGGAGACAAGACCGTTCGGCTTTGGGATGCTCGCACTGGGAAGTGTGCGCAGCTAGCGGAGCTTAGTGGGGAAAACATTAACATTACGTATAAGCCGGATGGGACGCACATTGCGGTTGGCAATAGGGATGATGAGCTGACGATTTTGGATGTTCGGAAGTTTAAGCCAATTCACAAGAGGAAGTTCAACTATGAGGTTAATGAAATTGCTTGGAACACAACAAGTGATATTTTCTTCTTGACGACTGGGAATGGTACTGTTGAAGTACTATCATACCCGTCTCTTAAGCCAGTTGACACTCTCATGGCTCATACAGCTGGATGCTATTGCATTGCAATTGATCCATGTGGAAGATATTTTGCTGTTGGGAGTGCCGATTCCCTGGTCAGCTTGTGGGATATCAAAGAGATGCTCTGTGTGCGAACATTTACAAAACTTGAATCGCCTGTGAGAACAATAAGCTTTAACCACACTGGAGAGTATCTTGCTTGTGCCAGTGAGGACTGGTTTATTGATATTGCAAATGTTCAAACTGCACGGACAGTGCATCAAATTCCATGTAGGGCTGCCATGAATAGTGTGGAATGGAATCCTAAAATCAATCTTCTTGCATATGCTGGGGATGACATCAAACCCCCTGGTGAAGGTATCTTTAGGATATTTGGCTTCAAAGGTTCGAGCTAG

Protein Analysis

316

Amino Acids

34.89

Weight (kDa)

6.46

Isoelectric Point (pI)

23.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 14 - 163 7.9e-15 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 15 - 169 4.5e-06 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 15 - 105 3.3e-15 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 15 - 142 2.1e-08 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 16 - 144 4.9e-18 Prp19 WD40 domain
WD40 PF00400 16 - 49 5.5e-07 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 16 - 105 1.2e-12 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st PF25173 17 - 137 2.4e-19 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 18 - 134 1.6e-06 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 19 - 143 3.8e-20 WDR5 beta-propeller domain
Beta-prop_Aladin PF25460 19 - 275 1.6e-11 Aladin seven-bladed propeller
EIF3I PF24805 19 - 127 4.7e-10 EIF3I
Beta-prop_THOC3 PF25174 21 - 294 1.8e-119 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 25 - 148 4.8e-08 TEP-1 second beta-propeller
WDR55 PF24796 60 - 179 4e-07 WDR55
WD40 PF00400 63 - 97 1.9e-06 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 74 - 149 1.6e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st PF23389 74 - 224 3.3e-09 WDR19 first beta-propeller
WD40_CDC20-Fz PF24807 115 - 291 3.7e-19 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 115 - 293 6.7e-20 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 116 - 287 5.7e-23 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 127 - 255 8e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 131 - 290 2.6e-17 Echinoderm microtubule-associated protein second beta-propeller
EIF3I PF24805 143 - 254 7.6e-09 EIF3I
Beta-prop_WDR3_1st PF25173 150 - 295 1.9e-12 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 151 - 299 4.4e-18 Prp19 WD40 domain
WD40 PF00400 184 - 221 8.5e-08 WD domain, G-beta repeat
WD40_Gbeta PF25391 187 - 261 1.6e-09 G protein beta WD-40 repeat protein
WDR55 PF24796 191 - 271 4.6e-06 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 209 - 294 8.9e-06 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 82
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 263
AciI CCGC 4 cut(s) 5, 21, 320, 377
AclWI GGATC 2 cut(s) 222, 599
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 816
AfaI GTAC 3 cut(s) 53, 520, 531
AfiI CCNNNNNNNGG 3 cut(s) 82, 87, 908
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 7 cut(s) 31, 193, 451, 527, 704, 794, 934
AjnI CCWGG 3 cut(s) 86, 645, 901
Alw26I GTCTC 3 cut(s) 2, 261, 549
AlwI GGATC 2 cut(s) 222, 599
Aor13HI TCCGGA 1 cut(s) 263
AoxI GGCC 3 cut(s) 18, 58, 84
ApeKI GCWGC 2 cut(s) 313, 830
ApoI RAATTY 1 cut(s) 816
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 73, 229
AsuHPI GGTGA 2 cut(s) 31, 917
AsuNHI GCTAGC 1 cut(s) 316
AvaII GGWCC 2 cut(s) 73, 229
BanI GGYRCC 1 cut(s) 101
BbvI GCAGC 2 cut(s) 325, 817
BccI CCATC 1 cut(s) 356
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BciT130I CCWGG 3 cut(s) 88, 647, 903
BcoDI GTCTC 3 cut(s) 2, 261, 549
BfaI CTAG 2 cut(s) 317, 946
BfrI CTTAAG 1 cut(s) 548
BisI GCNGC 3 cut(s) 21, 314, 831
BlsI GCNGC 3 cut(s) 22, 315, 832
BmcAI AGTACT 1 cut(s) 531
Bme1390I CCNGG 3 cut(s) 88, 647, 903
Bme18I GGWCC 2 cut(s) 73, 229
BmgT120I GGNCC 2 cut(s) 73, 229
BmiI GGNNCC 4 cut(s) 103, 121, 230, 231
BmrFI CCNGG 3 cut(s) 88, 647, 903
BmrI ACTGGG 2 cut(s) 309, 519
BmsI GCATC 4 cut(s) 280, 575, 663, 820
BmtI GCTAGC 1 cut(s) 320
BmuI ACTGGG 2 cut(s) 309, 519
BpmI CTGGAG 1 cut(s) 759
BsaAI YACGTR 1 cut(s) 351
BsaJI CCNNGG 4 cut(s) 55, 81, 645, 901
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 87, 908
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 6 cut(s) 304, 514, 554, 742, 759, 773
Bse3DI GCAATG 2 cut(s) 372, 594
BseAI TCCGGA 1 cut(s) 263
BseBI CCWGG 3 cut(s) 88, 647, 903
BseDI CCNNGG 4 cut(s) 55, 81, 645, 901
BseGI GGATG 6 cut(s) 295, 367, 397, 418, 590, 892
BseLI CCNNNNNNNGG 3 cut(s) 82, 87, 908
BseMI GCAATG 2 cut(s) 372, 594
BseNI ACTGG 6 cut(s) 304, 514, 554, 742, 759, 773
BseXI GCAGC 2 cut(s) 325, 817
BseYI CCCAGC 2 cut(s) 225, 881
BsgI GTGCAG 2 cut(s) 79, 783
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 20, 60, 86
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 3 cut(s) 99, 264, 359
BslFI GGGAC 2 cut(s) 242, 379
BslI CCNNNNNNNGG 3 cut(s) 82, 87, 908
BsmAI GTCTC 3 cut(s) 2, 261, 549
BsmBI CGTCTC 2 cut(s) 2, 549
BsmFI GGGAC 2 cut(s) 242, 379
BsnI GGCC 3 cut(s) 20, 60, 86
Bsp13I TCCGGA 1 cut(s) 263
Bsp143I GATC 3 cut(s) 127, 214, 604
BspACI CCGC 4 cut(s) 5, 21, 320, 377
BspANI GGCC 3 cut(s) 20, 60, 86
BspEI TCCGGA 1 cut(s) 263
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 4 cut(s) 103, 121, 230, 231
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 222, 599
BspT107I GGYRCC 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 372, 594
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 6 cut(s) 304, 514, 554, 742, 759, 773
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 4 cut(s) 55, 81, 645, 901
BssMI GATC 3 cut(s) 127, 214, 604
Bst2UI CCWGG 3 cut(s) 88, 647, 903
Bst4CI ACNGT 4 cut(s) 27, 277, 523, 808
BstAFI CTTAAG 1 cut(s) 548
BstBAI YACGTR 1 cut(s) 351
BstC8I GCNNGC 4 cut(s) 111, 240, 295, 318
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 2 cut(s) 55, 81
BstENI CCTNNNNNAGG 1 cut(s) 906
BstF5I GGATG 6 cut(s) 295, 367, 397, 418, 590, 892
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 3 cut(s) 130, 217, 607
BstMAI GTCTC 3 cut(s) 2, 261, 549
BstMBI GATC 3 cut(s) 127, 214, 604
BstMWI GCNNNNNNNGC 5 cut(s) 154, 317, 322, 578, 682
BstNI CCWGG 3 cut(s) 88, 647, 903
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 86, 645, 901
BstSNI TACGTA 1 cut(s) 351
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 325, 817
BsuRI GGCC 3 cut(s) 20, 60, 86
BtgI CCRYGG 2 cut(s) 55, 81
BtsCI GGATG 6 cut(s) 295, 367, 397, 418, 590, 892
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 5 cut(s) 255, 297, 735, 766, 813
Cac8I GCNNGC 4 cut(s) 111, 240, 295, 318
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 73, 229
CseI GACGC 2 cut(s) 102, 376
Csp6I GTAC 3 cut(s) 52, 519, 530
CviAII CATG 5 cut(s) 239, 568, 609, 822, 835
CviQI GTAC 3 cut(s) 52, 519, 530
DdeI CTNAG 1 cut(s) 326
DpnI GATC 3 cut(s) 129, 216, 606
DpnII GATC 3 cut(s) 127, 214, 604
EaeI YGGCCR 1 cut(s) 58
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 351
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 2 cut(s) 73, 229
EcoNI CCTNNNNNAGG 1 cut(s) 906
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 3 cut(s) 86, 645, 901
EcoRV GATATC 1 cut(s) 664
Esp3I CGTCTC 2 cut(s) 2, 549
FaeI CATG 5 cut(s) 242, 571, 612, 825, 838
FaqI GGGAC 2 cut(s) 242, 379
FatI CATG 5 cut(s) 238, 567, 608, 821, 834
FauNDI CATATG 1 cut(s) 877
Fnu4HI GCNGC 3 cut(s) 21, 314, 831
FokI GGATG 6 cut(s) 302, 374, 404, 425, 597, 899
Fsp4HI GCNGC 3 cut(s) 21, 314, 831
FspBI CTAG 2 cut(s) 317, 946
FspI TGCGCA 1 cut(s) 312
GlaI GCGC 1 cut(s) 312
GluI GCNGC 3 cut(s) 21, 314, 831
GsaI CCCAGC 2 cut(s) 229, 885
GsuI CTGGAG 1 cut(s) 759
HaeIII GGCC 3 cut(s) 20, 60, 86
HapII CCGG 3 cut(s) 99, 264, 359
HgaI GACGC 2 cut(s) 102, 376
HhaI GCGC 1 cut(s) 313
Hin1II CATG 5 cut(s) 242, 571, 612, 825, 838
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 1 cut(s) 724
HinfI GANTC 3 cut(s) 641, 704, 853
HpaII CCGG 3 cut(s) 99, 264, 359
HphI GGTGA 2 cut(s) 31, 917
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 3 cut(s) 132, 141, 420
Hpy188III TCNNGA 3 cut(s) 31, 264, 502
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 2 cut(s) 118, 128
HpyAV CCTTC 3 cut(s) 64, 187, 902
HpyCH4III ACNGT 4 cut(s) 27, 277, 523, 808
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 7 cut(s) 96, 594, 599, 785, 800, 811, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 154, 317, 322, 578, 682
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 5 cut(s) 242, 571, 612, 825, 838
HspAI GCGC 1 cut(s) 311
KflI GGGWCCC 1 cut(s) 229
Kpn2I TCCGGA 1 cut(s) 263
Kzo9I GATC 3 cut(s) 127, 214, 604
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 2 cut(s) 325, 817
LweI GCATC 4 cut(s) 280, 575, 663, 820
MaeI CTAG 2 cut(s) 317, 946
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 197
MalI GATC 3 cut(s) 129, 216, 606
MboI GATC 3 cut(s) 127, 214, 604
MboII GAAGA 3 cut(s) 490, 627, 860
MfeI CAATTG 1 cut(s) 600
MluCI AATT 4 cut(s) 432, 468, 600, 816
MnlI CCTC 7 cut(s) 10, 47, 168, 271, 435, 451, 757
MroI TCCGGA 1 cut(s) 263
MseI TTAA 5 cut(s) 342, 426, 462, 549, 729
MslI CAYNNNNRTG 1 cut(s) 566
MspA1I CMGCKG 2 cut(s) 220, 581
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 3 cut(s) 99, 264, 359
MspR9I CCNGG 3 cut(s) 88, 647, 903
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 3 cut(s) 88, 647, 903
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 5 cut(s) 154, 317, 322, 578, 682
NdeI CATATG 1 cut(s) 877
NdeII GATC 3 cut(s) 127, 214, 604
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 5 cut(s) 242, 571, 612, 825, 838
NlaIV GGNNCC 4 cut(s) 103, 121, 230, 231
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 197
NsbI TGCGCA 1 cut(s) 312
NspI RCATGY 1 cut(s) 242
PaeI GCATGC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 641, 704, 853
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 3 cut(s) 22, 315, 832
Ppu21I YACGTR 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 3 cut(s) 86, 645, 901
PspFI CCCAGC 2 cut(s) 225, 881
PspGI CCWGG 3 cut(s) 86, 645, 901
PspN4I GGNNCC 4 cut(s) 103, 121, 230, 231
PspPI GGNCC 2 cut(s) 73, 229
PspPPI RGGWCCY 1 cut(s) 229
PvuII CAGCTG 2 cut(s) 220, 581
RsaI GTAC 3 cut(s) 53, 520, 531
RsaNI GTAC 3 cut(s) 52, 519, 530
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 5 cut(s) 342, 426, 462, 549, 729
SatI GCNGC 3 cut(s) 21, 314, 831
Sau3AI GATC 3 cut(s) 127, 214, 604
Sau96I GGNCC 2 cut(s) 73, 229
ScaI AGTACT 1 cut(s) 531
ScrFI CCNGG 3 cut(s) 88, 647, 903
SfaNI GCATC 4 cut(s) 280, 575, 663, 820
SinI GGWCC 2 cut(s) 73, 229
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SnaBI TACGTA 1 cut(s) 351
SphI GCATGC 1 cut(s) 242
Sse9I AATT 4 cut(s) 432, 468, 600, 816
SsiI CCGC 4 cut(s) 5, 21, 320, 377
SspMI CTAG 2 cut(s) 317, 946
StyD4I CCNGG 3 cut(s) 86, 645, 901
TaaI ACNGT 4 cut(s) 27, 277, 523, 808
TaiI ACGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 126, 941
TasI AATT 4 cut(s) 432, 468, 600, 816
TatI WGTACW 1 cut(s) 529
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 3 cut(s) 641, 704, 853
Tru1I TTAA 5 cut(s) 342, 426, 462, 549, 729
Tru9I TTAA 5 cut(s) 342, 426, 462, 549, 729
TscAI CASTG 5 cut(s) 262, 304, 742, 766, 813
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 313, 830
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 480, 851
TspGWI ACGGA 5 cut(s) 70, 112, 177, 218, 817
TspRI CASTG 5 cut(s) 262, 304, 742, 766, 813
Van91I CCANNNNNTGG 1 cut(s) 82
Vha464I CTTAAG 1 cut(s) 548
VpaK11BI GGWCC 2 cut(s) 73, 229
XagI CCTNNNNNAGG 1 cut(s) 906
XapI RAATTY 1 cut(s) 816
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 841
XspI CTAG 2 cut(s) 317, 946
ZrmI AGTACT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.