Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003945.1

Orthogroup ID

OG0008473

Physical Location & Seq

Genomic Coordinates Forward (+)

9776 .. 12510

Gene Structure 2735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003945.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggaggaggccgtaccgttcaagaacctcaacagcagagagtaccacggccacgagaagaaggtgcactctgtggcttggaactgcaccggcacaaagctcgcatcgggttccgtggaccaaaccgctcggatttggcacattgagcctcacggacatagtaagcctaaaggtgtggaattgagggggcacacggatagtgtggatcagctgtgttgggatcccaagcatgctgatttggttgccactgcctccggtgacaaaaccgttcggctatgggatgcgcggactgggaagtgtgcgcagctagcggagcttagtggtgaaaacattaacattacatataagccggacgggacgcacattgctgttggtaatagggacgatgaactgacgattttggatgttcggaaatttaagccaattcacaagaggaagttcaattatgaggttaatgaaattgcttggaacacaacaagtgatattttcttcttgacgactggaaatggcaccgttgaagtactatcatacccatctcttaaaccagtggacactctaatggctcatacagctggttgctattgcattgcaattgacccatgtggaagatattttgctgttgggagtgccgattccctggtcagcttgtgggatatctcagagatgctctgtgtgcgaacatttacaaaacttgaatcgcctgtgagaacaataagcttcaaccatactggagagtatcttgcttgtgccagtgaagactggtttattgatatatcaaatgttcaaactgggcggacggtgcatcaaattccttgtagggctgccatgaacagtgtggagtggaatcctaaaagcaatctacttgcatatgctggggatgacaagatcaaaccccctggtgaaggtatctttaggatatttggcttcaaaagttcgagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

313

Amino Acids

34.82

Weight (kDa)

6.35

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56130
fragaria_vesca	FvH4_3g41760 FvH4_3g41780 FvH4_3g41780 FvH4_3g41780
malus_domestica	MD11G1042100.v1.1
prunus_persica	Prupe.6G033200_v2.0.a1 Prupe.6G033200_v2.0.a1
pyrus_communis	pycom03g03140 pycom11g03620
rosa_chinensis	RchiOBHm_Chr5g0074851 RchiOBHm_Chr5g0074871
rosa_laevigata	RLG00000036510 RLG00000036512
rosa_multiflora	Rmu_sc0003945.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006700 Rroxscaffold_1G00006730
rosa_rugosa	Rorug05G0434900 Rorug05G0435300
rosa_samantha	Rh5AG492200 Rh5AG492400
rosa_wichuraiana	Rw5G045600 Rw5G045630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	509
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	286
AciI	CCGC	4 cut(s)	126, 286, 311, 793
AclWI	GGATC	3 cut(s)	213, 215, 228
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	413, 807
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	3 cut(s)	15, 44, 522
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	7 cut(s)	22, 442, 518, 695, 721, 785, 928
AjnI	CCWGG	2 cut(s)	636, 895
AluBI	AGCT	8 cut(s)	100, 211, 307, 316, 572, 645, 717, 939
AluI	AGCT	8 cut(s)	100, 211, 307, 316, 572, 645, 717, 939
Alw21I	GWGCWC	1 cut(s)	69
Alw44I	GTGCAC	1 cut(s)	65
AlwI	GGATC	3 cut(s)	213, 215, 228
AoxI	GGCC	2 cut(s)	9, 49
ApaLI	GTGCAC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	304, 821
ApoI	RAATTY	2 cut(s)	413, 807
AspLEI	GCGC	2 cut(s)	286, 304
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	269, 335, 911
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	69, 192
BamHI	GGATCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	316, 808
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	2 cut(s)	638, 897
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	305, 822
BlsI	GCNGC	2 cut(s)	306, 823
BmcAI	AGTACT	1 cut(s)	522
Bme1390I	CCNGG	2 cut(s)	638, 897
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	112, 222, 511
BmrFI	CCNGG	2 cut(s)	638, 897
BmrI	ACTGGG	2 cut(s)	300, 798
BmsI	GCATC	4 cut(s)	113, 271, 654, 811
BmtI	GCTAGC	1 cut(s)	311
BmuI	ACTGGG	2 cut(s)	300, 798
BpiI	GAAGAC	1 cut(s)	762
BpmI	CTGGAG	1 cut(s)	750
BsaJI	CCNNGG	4 cut(s)	46, 114, 636, 895
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	7 cut(s)	295, 505, 545, 733, 750, 764, 793
Bse3DI	GCAATG	2 cut(s)	363, 585
BseBI	CCWGG	2 cut(s)	638, 897
BseDI	CCNNGG	4 cut(s)	46, 114, 636, 895
BseGI	GGATG	3 cut(s)	286, 409, 883
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMI	GCAATG	2 cut(s)	363, 585
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	7 cut(s)	295, 505, 545, 733, 750, 764, 793
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	69, 192
BseXI	GCAGC	2 cut(s)	316, 808
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	11, 51
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	90, 255, 350
BslFI	GGGAC	2 cut(s)	370, 395
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmFI	GGGAC	2 cut(s)	370, 395
BsnI	GGCC	2 cut(s)	11, 51
Bsp1286I	GDGCHC	2 cut(s)	69, 192
Bsp143I	GATC	3 cut(s)	205, 220, 885
BspACI	CCGC	4 cut(s)	126, 286, 311, 793
BspANI	GGCC	2 cut(s)	11, 51
BspCNI	CTCAG	1 cut(s)	671
BspFNI	CGCG	1 cut(s)	286
BspLI	GGNNCC	3 cut(s)	112, 222, 511
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	213, 215, 228
BspT107I	GGYRCC	1 cut(s)	509
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	363, 585
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	7 cut(s)	295, 505, 545, 733, 750, 764, 793
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	46, 114, 636, 895
BssMI	GATC	3 cut(s)	205, 220, 885
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	638, 897
Bst4CI	ACNGT	5 cut(s)	18, 268, 514, 799, 833
BstC8I	GCNNGC	3 cut(s)	102, 231, 309
BstDEI	CTNAG	2 cut(s)	317, 658
BstDSI	CCRYGG	2 cut(s)	46, 114
BstENI	CCTNNNNNAGG	1 cut(s)	900
BstF5I	GGATG	3 cut(s)	286, 409, 883
BstFNI	CGCG	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	286, 304
BstKTI	GATC	3 cut(s)	208, 223, 888
BstMBI	GATC	3 cut(s)	205, 220, 885
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 308, 313, 569, 673, 799
BstNI	CCWGG	2 cut(s)	638, 897
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	636, 895
BstSLI	GKGCMC	2 cut(s)	69, 192
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	316, 808
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	11, 51
BtgI	CCRYGG	2 cut(s)	46, 114
BtsCI	GGATG	3 cut(s)	286, 409, 883
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	4 cut(s)	246, 552, 757, 838
Cac8I	GCNNGC	3 cut(s)	102, 231, 309
CfoI	GCGC	2 cut(s)	286, 304
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	3 cut(s)	14, 43, 521
CviAII	CATG	3 cut(s)	230, 600, 826
CviQI	GTAC	3 cut(s)	14, 43, 521
DdeI	CTNAG	2 cut(s)	317, 658
DpnI	GATC	3 cut(s)	207, 222, 887
DpnII	GATC	3 cut(s)	205, 220, 885
DraIII	CACNNNGTG	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	808
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	900
EcoRII	CCWGG	2 cut(s)	636, 895
EcoRV	GATATC	1 cut(s)	655
FaeI	CATG	3 cut(s)	233, 603, 829
FaqI	GGGAC	2 cut(s)	370, 395
FatI	CATG	3 cut(s)	229, 599, 825
FauNDI	CATATG	1 cut(s)	868
Fnu4HI	GCNGC	2 cut(s)	305, 822
FokI	GGATG	3 cut(s)	293, 416, 890
Fsp4HI	GCNGC	2 cut(s)	305, 822
FspBI	CTAG	1 cut(s)	308
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	2 cut(s)	285, 303
GluI	GCNGC	2 cut(s)	305, 822
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	11, 51
HapII	CCGG	3 cut(s)	90, 255, 350
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	2 cut(s)	286, 304
Hin1II	CATG	3 cut(s)	233, 603, 829
Hin6I	GCGC	2 cut(s)	284, 302
HinP1I	GCGC	2 cut(s)	284, 302
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	3 cut(s)	632, 695, 844
HpaII	CCGG	3 cut(s)	90, 255, 350
HphI	GGTGA	3 cut(s)	269, 335, 911
Hpy166II	GTNNAC	3 cut(s)	67, 118, 550
Hpy188I	TCNGA	3 cut(s)	132, 411, 661
Hpy188III	TCNNGA	2 cut(s)	22, 493
Hpy8I	GTNNAC	3 cut(s)	67, 118, 550
HpyAV	CCTTC	2 cut(s)	55, 896
HpyCH4III	ACNGT	5 cut(s)	18, 268, 514, 799, 833
HpyCH4V	TGCA	6 cut(s)	67, 87, 585, 590, 802, 866
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 308, 313, 569, 673, 799
HpyF3I	CTNAG	2 cut(s)	317, 658
Hsp92II	CATG	3 cut(s)	233, 603, 829
HspAI	GCGC	2 cut(s)	284, 302
Kzo9I	GATC	3 cut(s)	205, 220, 885
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	316, 808
LweI	GCATC	4 cut(s)	113, 271, 654, 811
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	3 cut(s)	207, 222, 887
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	3 cut(s)	205, 220, 885
MboII	GAAGA	4 cut(s)	70, 481, 618, 767
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	2 cut(s)	69, 192
MluCI	AATT	7 cut(s)	179, 413, 423, 442, 459, 591, 807
MnlI	CCTC	6 cut(s)	38, 159, 177, 262, 426, 442
MseI	TTAA	4 cut(s)	333, 417, 453, 540
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	2 cut(s)	211, 572
MspI	CCGG	3 cut(s)	90, 255, 350
MspR9I	CCNGG	2 cut(s)	638, 897
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	2 cut(s)	638, 897
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	6 cut(s)	145, 308, 313, 569, 673, 799
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	3 cut(s)	205, 220, 885
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	233, 603, 829
NlaIV	GGNNCC	3 cut(s)	112, 222, 511
NmuCI	GTSAC	1 cut(s)	257
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	632, 695, 844
PkrI	GCNGC	2 cut(s)	306, 823
Psp6I	CCWGG	2 cut(s)	636, 895
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	2 cut(s)	636, 895
PspN4I	GGNNCC	3 cut(s)	112, 222, 511
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	2 cut(s)	211, 572
RsaI	GTAC	3 cut(s)	15, 44, 522
RsaNI	GTAC	3 cut(s)	14, 43, 521
RseI	CAYNNNNRTG	1 cut(s)	557
SaqAI	TTAA	4 cut(s)	333, 417, 453, 540
SatI	GCNGC	2 cut(s)	305, 822
Sau3AI	GATC	3 cut(s)	205, 220, 885
Sau96I	GGNCC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	522
ScrFI	CCNGG	2 cut(s)	638, 897
SduI	GDGCHC	2 cut(s)	69, 192
SfaNI	GCATC	4 cut(s)	113, 271, 654, 811
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	557
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	7 cut(s)	179, 413, 423, 442, 459, 591, 807
SsiI	CCGC	4 cut(s)	126, 286, 311, 793
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	636, 895
TaaI	ACNGT	5 cut(s)	18, 268, 514, 799, 833
TaqI	TCGA	1 cut(s)	935
TasI	AATT	7 cut(s)	179, 413, 423, 442, 459, 591, 807
TatI	WGTACW	1 cut(s)	520
TfiI	GAWTC	3 cut(s)	632, 695, 844
Tru1I	TTAA	4 cut(s)	333, 417, 453, 540
Tru9I	TTAA	4 cut(s)	333, 417, 453, 540
TscAI	CASTG	4 cut(s)	253, 552, 757, 838
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	2 cut(s)	304, 821
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	402, 471, 842
TspGWI	ACGGA	3 cut(s)	103, 168, 209
TspRI	CASTG	4 cut(s)	253, 552, 757, 838
VneI	GTGCAC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	900
XapI	RAATTY	2 cut(s)	413, 807
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XspI	CTAG	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.