Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008473

Physical Location & Seq

Genomic Coordinates Reverse (-)

60409466 .. 60411609

Gene Structure 2144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0435300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGATAGCAGGAGGATCACAACTCATAGTAGAAGAAAACCAACCACACTTGCAGAGCTTCTCCTTGCCCAAATTCTCTGAATTTCTCGGAATACATCATCACTACCAAATGGCAAAAAGTAATCCTGATGAAAAGATTCTCAGCTACAATGATGTGGTACTTAGACGATCAGACTTGGATATCCTCAGTGGCCCATATTTTCTCAATGATCGAATCATCGAGTTCTATTTTAGTTATCTTTCATCATGCTCTGAGGAGATTTTACTCATTCCACCTTCAATTACATTCTGGATAATGAATTGCCCAGCTGAGAGCCTAAAAGACTTCCTAGACCCTCTTCATTTGCCTGATAAGAAACTGGTAATCTTTCCTGTCAATGACAATGATGATGTGAGTGAAGCTGAAGGTGGATATCATTGGAGCCTACTTGCATTTGAGAGAAGCGTCAACACATTTGTTCATCATGATAGCAGTGGAGGGAGATGGAATAAAGGTCCCGCCAAACGACTTTATAATGCTGTTAAGAAATTTATGAGTGATTCCAGTTCAACAACTGAGCCCATTTATAAAGAGTGTACTGATTCACCACACCAAGTAAATGGTTACGATTGTGGCATGTATGTATTGGCCATTGCAAGGATAATATGCAGCTGGTATGGAAGTAAAGACAAAGATGGAGATAATATGTGGTTCTGTGCTGTGAAGGAACAAGTCACTCCATCGGCTGTCGCTGCAATGCGAGGTGAGATCCTGGGGTTGATTAGAGGTTTGATGCCCAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

261

Amino Acids

29.55

Weight (kDa)

5.57

Isoelectric Point (pI)

60.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	114 - 215	1.8e-10	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56130
fragaria_vesca	FvH4_3g41760 FvH4_3g41780 FvH4_3g41780 FvH4_3g41780
malus_domestica	MD11G1042100.v1.1
prunus_persica	Prupe.6G033200_v2.0.a1 Prupe.6G033200_v2.0.a1
pyrus_communis	pycom03g03140 pycom11g03620
rosa_chinensis	RchiOBHm_Chr5g0074851 RchiOBHm_Chr5g0074871
rosa_laevigata	RLG00000036510 RLG00000036512
rosa_multiflora	Rmu_sc0003945.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006700 Rroxscaffold_1G00006730
rosa_rugosa	Rorug05G0434900 Rorug05G0435300
rosa_samantha	Rh5AG492200 Rh5AG492400
rosa_wichuraiana	Rw5G045600 Rw5G045630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	513, 567
AciI	CCGC	1 cut(s)	498
AclWI	GGATC	2 cut(s)	22, 742
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	3 cut(s)	71, 80, 527
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	2 cut(s)	159, 577
AfiI	CCNNNNNNNGG	1 cut(s)	636
AgsI	TTSAA	2 cut(s)	279, 549
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	5 cut(s)	57, 144, 308, 401, 651
AluI	AGCT	5 cut(s)	57, 144, 308, 401, 651
AlwI	GGATC	2 cut(s)	22, 742
AoxI	GGCC	2 cut(s)	190, 627
ApeKI	GCWGC	2 cut(s)	648, 731
ApoI	RAATTY	3 cut(s)	71, 80, 527
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	191, 494
AsuHPI	GGTGA	2 cut(s)	576, 755
AvaII	GGWCC	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	660, 718
BccI	CCATC	3 cut(s)	477, 668, 727
BciT130I	CCWGG	1 cut(s)	752
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	649, 732
BlsI	GCNGC	2 cut(s)	650, 733
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	191, 494
BmiI	GGNNCC	2 cut(s)	422, 496
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	1 cut(s)	762
BsaJI	CCNNGG	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse1I	ACTGG	2 cut(s)	363, 543
Bse3DI	GCAATG	2 cut(s)	630, 741
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	751
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseMI	GCAATG	2 cut(s)	630, 741
BseMII	CTCAG	5 cut(s)	154, 199, 243, 300, 546
BseNI	ACTGG	2 cut(s)	363, 543
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	660, 718
BseYI	CCCAGC	1 cut(s)	304
BshFI	GGCC	2 cut(s)	192, 629
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	192, 629
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	14, 167, 208, 747
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	2 cut(s)	192, 629
BspCNI	CTCAG	5 cut(s)	153, 198, 244, 301, 547
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	422, 496
BspPI	GGATC	2 cut(s)	22, 742
BsrDI	GCAATG	2 cut(s)	630, 741
BsrI	ACTGG	2 cut(s)	363, 543
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	4 cut(s)	14, 167, 208, 747
Bst2UI	CCWGG	1 cut(s)	752
Bst6I	CTCTTC	1 cut(s)	342
BstDEI	CTNAG	6 cut(s)	140, 161, 185, 252, 309, 555
BstKTI	GATC	4 cut(s)	17, 170, 211, 750
BstMBI	GATC	4 cut(s)	14, 167, 208, 747
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstNI	CCWGG	1 cut(s)	752
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	660, 718
BstX2I	RGATCY	1 cut(s)	747
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	747
BsuRI	GGCC	2 cut(s)	192, 629
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	193, 478
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	191, 494
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	2 cut(s)	158, 576
CviAII	CATG	3 cut(s)	246, 464, 616
CviQI	GTAC	2 cut(s)	158, 576
DdeI	CTNAG	6 cut(s)	140, 161, 185, 252, 309, 555
DpnI	GATC	4 cut(s)	16, 169, 210, 749
DpnII	GATC	4 cut(s)	14, 167, 208, 747
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	561
Eco32I	GATATC	2 cut(s)	181, 413
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	750
EcoRV	GATATC	2 cut(s)	181, 413
EcoT38I	GRGCYC	1 cut(s)	561
FaeI	CATG	3 cut(s)	249, 467, 619
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	3 cut(s)	245, 463, 615
FauI	CCCGC	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	649, 732
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	2 cut(s)	649, 732
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	2 cut(s)	649, 732
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	192, 629
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	249, 467, 619
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	4 cut(s)	136, 213, 539, 581
HphI	GGTGA	2 cut(s)	576, 755
Hpy166II	GTNNAC	2 cut(s)	448, 576
Hpy188I	TCNGA	4 cut(s)	79, 89, 172, 253
Hpy188III	TCNNGA	3 cut(s)	125, 289, 464
Hpy8I	GTNNAC	2 cut(s)	448, 576
HpyAV	CCTTC	3 cut(s)	285, 398, 697
HpyCH4V	TGCA	5 cut(s)	52, 431, 635, 648, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	6 cut(s)	140, 161, 185, 252, 309, 555
Hsp92II	CATG	3 cut(s)	249, 467, 619
Kzo9I	GATC	4 cut(s)	14, 167, 208, 747
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	2 cut(s)	660, 718
LweI	GCATC	1 cut(s)	762
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	602, 712
MalI	GATC	4 cut(s)	16, 169, 210, 749
MboI	GATC	4 cut(s)	14, 167, 208, 747
MboII	GAAGA	2 cut(s)	44, 329
MflI	RGATCY	1 cut(s)	747
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	5 cut(s)	71, 80, 279, 298, 527
MluNI	TGGCCA	1 cut(s)	629
MnlI	CCTC	7 cut(s)	5, 194, 247, 345, 470, 734, 758
Mox20I	TGGCCA	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	2 cut(s)	308, 651
MspR9I	CCNGG	1 cut(s)	752
MvaI	CCWGG	1 cut(s)	752
MwoI	GCNNNNNNNGC	1 cut(s)	731
NdeII	GATC	4 cut(s)	14, 167, 208, 747
NlaIII	CATG	3 cut(s)	249, 467, 619
NlaIV	GGNNCC	2 cut(s)	422, 496
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	1 cut(s)	619
PagI	TCATGA	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	136, 213, 539, 581
PkrI	GCNGC	2 cut(s)	650, 733
PpuMI	RGGWCCY	1 cut(s)	494
PsiI	TTATAA	2 cut(s)	513, 567
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	750
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	2 cut(s)	422, 496
PspPI	GGNCC	2 cut(s)	191, 494
PspPPI	RGGWCCY	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	747
PvuII	CAGCTG	2 cut(s)	308, 651
RsaI	GTAC	2 cut(s)	159, 577
RsaNI	GTAC	2 cut(s)	158, 576
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	2 cut(s)	649, 732
Sau3AI	GATC	4 cut(s)	14, 167, 208, 747
Sau96I	GGNCC	2 cut(s)	191, 494
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	762
SinI	GGWCC	1 cut(s)	494
Sse9I	AATT	5 cut(s)	71, 80, 279, 298, 527
SsiI	CCGC	1 cut(s)	498
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	750
TaqI	TCGA	2 cut(s)	211, 219
TasI	AATT	5 cut(s)	71, 80, 279, 298, 527
TatI	WGTACW	1 cut(s)	575
TfiI	GAWTC	4 cut(s)	136, 213, 539, 581
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	193, 478
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	2 cut(s)	648, 731
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	5 cut(s)	144, 231, 311, 329, 449
TspRI	CASTG	2 cut(s)	193, 478
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	3 cut(s)	71, 80, 527
XceI	RCATGY	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.