Rw5G045630

THO complex subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
79626925 .. 79629682
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045630.1

Sequence Viewer

Length: 936 bp
ATGGAGAAGACGACGCCGTTCAAGAATCTCCTAAGCAGAGAGTACCGTGTCCATGAGAAGGAGGTGCGATCGGTGGCTTGGAACTTCACCGGAACCAAGCTCGCATCGGGTTCTGAGGATCAGACCGCTAGGGTTTGGCACATTGAGCCTCATGGAAATGGTAACTCTGTTGAATTGAAGGGGCACAGGGATAGTGTGGAGCAGCTGTGTTGGGATCCCAAGCATGCCGAGTTGGTTGCCACTGCCTCTATGGACAAAACTGTTCGTCTCTGGGATGATCGTACCGGGAAGTGTGTGCAGCTAGCGGAACTCAGTGGCCTGAACATTAACATTGCATATAAACCTGATGGCGAGCTCATAGCAGTTGGTGATACGAACAACGAATTGACAATTTTGGATGTTCGGACGTTTAAGCCAATTCACAAGAGGAAGTTCCATTGCGAGGTAAATGAAATTGCTTGGAACACAACAAGTGAAATTTTGTTCGTGACAACTGGAAAGGATGAGAAAGGTGTTGTTGAAGTACTATCATACCCATCTCTTCAACCACTTGACAGGCTCATGGCTCATACAGCTGGTTGCCATTGCATTGCAATTGACCCATGTGGAAGATATTTTGCTGTTGGGAGTGCCGATTCCTTGGTCAGCCTATGGGATATCTCAGAGTTGCTCTGTGTGCGAACGTTTACAAAAATTAAATCGGCTGTGAGGACAATAAGCTTCAACCACAGTGGAGAGTATCTTGCTTCTGGTAGTACAGACTGTTTCATTGACATATCAAATGTTCAAACTGGGCGTACAGTGCATCAAATTCCATGTGGGCCTGCCATGAACAGTGTTGACTGGAATCCTAAAAGCAATCTACTTGCATATGCTGGGAAGGACAACATCAATGAAGGTATTGTGAGGATCTTCGGCTTCACAAGCACGGGCTAA

Protein Analysis

311

Amino Acids

34.51

Weight (kDa)

6.13

Isoelectric Point (pI)

25.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 12 - 100 4.9e-17 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 12 - 100 6.3e-15 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 12 - 162 4.1e-08 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st PF25171 13 - 166 2.2e-06 WDR36/Utp21 first beta-propeller
WDR55 PF24796 13 - 100 1e-07 WDR55
WD40 PF00400 13 - 46 9.7e-08 WD domain, G-beta repeat
WD40_Prp19 PF24814 13 - 142 3.7e-19 Prp19 WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 14 - 101 1.5e-11 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st PF25173 15 - 132 2.1e-18 WDR3 first beta-propeller domain
EIF3I PF24805 18 - 121 8e-09 EIF3I
Beta-prop_THOC3 PF25174 18 - 292 5.8e-111 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 20 - 166 4.7e-10 Aladin seven-bladed propeller
WD40_WDHD1_1st PF24817 20 - 102 5.9e-12 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 22 - 143 1.2e-08 TEP-1 second beta-propeller
WDR55 PF24796 57 - 167 6e-06 WDR55
WD40 PF00400 58 - 92 4.3e-07 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 59 - 143 2.1e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR19_1st PF23389 69 - 220 9.2e-09 WDR19 first beta-propeller
Beta-prop_EML_2 PF23414 69 - 164 4.7e-11 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 111 - 295 3.6e-24 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 111 - 292 1.6e-23 CDC20/Fizzy WD40 domain
DUF7099 PF23388 121 - 222 9.6e-06 Domain of unknown function (DUF7099)
EIF3I PF24805 139 - 248 1.1e-06 EIF3I
Beta-prop_IFT122_1st PF23381 145 - 270 5.2e-06 IFT122 first beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 147 - 297 5.4e-09 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 148 - 295 1.6e-16 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 159 - 291 7.3e-13 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 165 - 297 1.4e-15 WDHD1 first WD40 domain
WD40 PF00400 182 - 219 1.5e-06 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 186 - 296 3.9e-14 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 187 - 299 1.5e-09 G protein beta WD-40 repeat protein
WDR55 PF24796 197 - 271 9.2e-06 WDR55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 126, 305
AclI AACGTT 1 cut(s) 683
AclWI GGATC 4 cut(s) 126, 209, 222, 917
AcsI RAATTY 2 cut(s) 477, 810
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 5 cut(s) 44, 283, 525, 757, 799
AfiI CCNNNNNNNGG 2 cut(s) 58, 442
AgsI TTSAA 7 cut(s) 22, 173, 178, 521, 545, 724, 788
AluBI AGCT 6 cut(s) 100, 205, 301, 355, 575, 720
AluI AGCT 6 cut(s) 100, 205, 301, 355, 575, 720
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 4 cut(s) 126, 209, 222, 917
AoxI GGCC 2 cut(s) 316, 821
ApeKI GCWGC 2 cut(s) 202, 298
ApoI RAATTY 2 cut(s) 477, 810
AspS9I GGNCC 1 cut(s) 821
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 79, 380
AsuNHI GCTAGC 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 214, 310
BccI CCATC 2 cut(s) 341, 544
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 129, 302
BisI GCNGC 2 cut(s) 203, 299
BlsI GCNGC 2 cut(s) 204, 300
BmcAI AGTACT 1 cut(s) 525
Bme1390I CCNGG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 2 cut(s) 94, 216
BmrFI CCNGG 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 2 cut(s) 113, 814
BmtI GCTAGC 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 639
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 442
Bse1I ACTGG 3 cut(s) 499, 796, 848
Bse3DI GCAATG 4 cut(s) 330, 436, 583, 588
BseDI CCNNGG 1 cut(s) 639
BseGI GGATG 3 cut(s) 280, 403, 508
BseLI CCNNNNNNNGG 2 cut(s) 58, 442
BseMI GCAATG 4 cut(s) 330, 436, 583, 588
BseMII CTCAG 3 cut(s) 105, 325, 675
BseNI ACTGG 3 cut(s) 499, 796, 848
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 2 cut(s) 214, 310
BseYI CCCAGC 1 cut(s) 875
BsgI GTGCAG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 318, 823
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 2 cut(s) 90, 285
BslI CCNNNNNNNGG 2 cut(s) 58, 442
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
BsnI GGCC 2 cut(s) 318, 823
Bsp1286I GDGCHC 2 cut(s) 186, 357
Bsp143I GATC 5 cut(s) 68, 118, 214, 277, 909
BspACI CCGC 2 cut(s) 126, 305
BspANI GGCC 2 cut(s) 318, 823
BspCNI CTCAG 3 cut(s) 106, 324, 674
BspLI GGNNCC 2 cut(s) 94, 216
BspOI GCTAGC 1 cut(s) 305
BspPI GGATC 4 cut(s) 126, 209, 222, 917
BsrDI GCAATG 4 cut(s) 330, 436, 583, 588
BsrI ACTGG 3 cut(s) 499, 796, 848
BssECI CCNNGG 1 cut(s) 639
BssMI GATC 5 cut(s) 68, 118, 214, 277, 909
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 639
Bst4CI ACNGT 6 cut(s) 47, 262, 731, 764, 802, 836
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 5 cut(s) 102, 225, 303, 353, 825
BstDEI CTNAG 4 cut(s) 32, 114, 311, 661
BstF5I GGATG 3 cut(s) 280, 403, 508
BstKTI GATC 5 cut(s) 71, 121, 217, 280, 912
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 5 cut(s) 68, 118, 214, 277, 909
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 5 cut(s) 145, 572, 676, 802, 924
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 284
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 214, 310
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 214, 909
BstYI RGATCY 2 cut(s) 214, 909
BsuRI GGCC 2 cut(s) 318, 823
BtsCI GGATG 3 cut(s) 280, 403, 508
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 5 cut(s) 240, 319, 736, 807, 841
Cac8I GCNNGC 5 cut(s) 102, 225, 303, 353, 825
Cfr13I GGNCC 1 cut(s) 821
CseI GACGC 1 cut(s) 22
Csp6I GTAC 5 cut(s) 43, 282, 524, 756, 798
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 7 cut(s) 53, 152, 224, 562, 603, 816, 829
CviQI GTAC 5 cut(s) 43, 282, 524, 756, 798
DdeI CTNAG 4 cut(s) 32, 114, 311, 661
DpnI GATC 5 cut(s) 70, 120, 216, 279, 911
DpnII GATC 5 cut(s) 68, 118, 214, 277, 909
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 357
Eco32I GATATC 1 cut(s) 658
Eco53kI GAGCTC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 355
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 639
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 639
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 7 cut(s) 56, 155, 227, 565, 606, 819, 832
FatI CATG 7 cut(s) 52, 151, 223, 561, 602, 815, 828
FauNDI CATATG 1 cut(s) 871
Fnu4HI GCNGC 2 cut(s) 203, 299
FokI GGATG 3 cut(s) 287, 410, 515
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 203, 299
FspBI CTAG 2 cut(s) 129, 302
GluI GCNGC 2 cut(s) 203, 299
GsaI CCCAGC 1 cut(s) 879
HaeIII GGCC 2 cut(s) 318, 823
HapII CCGG 2 cut(s) 90, 285
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 7 cut(s) 56, 155, 227, 565, 606, 819, 832
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 1 cut(s) 718
HinfI GANTC 3 cut(s) 25, 635, 847
HpaII CCGG 2 cut(s) 90, 285
HphI GGTGA 2 cut(s) 79, 380
Hpy166II GTNNAC 2 cut(s) 687, 841
Hpy188I TCNGA 4 cut(s) 115, 123, 405, 664
Hpy188III TCNNGA 2 cut(s) 22, 487
Hpy8I GTNNAC 2 cut(s) 687, 841
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 52, 172, 874, 890
HpyCH4III ACNGT 6 cut(s) 47, 262, 731, 764, 802, 836
HpyCH4IV ACGT 2 cut(s) 407, 683
HpyCH4V TGCA 6 cut(s) 298, 335, 588, 593, 805, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 572, 676, 802, 924
HpyF3I CTNAG 4 cut(s) 32, 114, 311, 661
HpySE526I ACGT 2 cut(s) 407, 683
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 7 cut(s) 56, 155, 227, 565, 606, 819, 832
Kzo9I GATC 5 cut(s) 68, 118, 214, 277, 909
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 2 cut(s) 214, 310
LweI GCATC 2 cut(s) 113, 814
MaeI CTAG 2 cut(s) 129, 302
MaeII ACGT 2 cut(s) 407, 683
MaeIII GTNAC 2 cut(s) 161, 487
MalI GATC 5 cut(s) 70, 120, 216, 279, 911
MboI GATC 5 cut(s) 68, 118, 214, 277, 909
MboII GAAGA 4 cut(s) 19, 533, 621, 904
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 2 cut(s) 214, 909
MhlI GDGCHC 2 cut(s) 186, 357
MluCI AATT 9 cut(s) 173, 383, 390, 417, 453, 477, 594, 693, 810
MnlI CCTC 8 cut(s) 55, 109, 159, 256, 420, 436, 702, 900
MseI TTAA 3 cut(s) 327, 411, 696
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 205, 575
MspI CCGG 2 cut(s) 90, 285
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 594
MwoI GCNNNNNNNGC 5 cut(s) 145, 572, 676, 802, 924
NciI CCSGG 1 cut(s) 286
NdeI CATATG 1 cut(s) 871
NdeII GATC 5 cut(s) 68, 118, 214, 277, 909
NheI GCTAGC 1 cut(s) 301
NlaIII CATG 7 cut(s) 56, 155, 227, 565, 606, 819, 832
NlaIV GGNNCC 2 cut(s) 94, 216
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 487
NspI RCATGY 1 cut(s) 227
PaeI GCATGC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 25, 635, 847
PkrI GCNGC 2 cut(s) 204, 300
Ple19I CGATCG 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 683
PspFI CCCAGC 1 cut(s) 875
PspN4I GGNNCC 2 cut(s) 94, 216
PspPI GGNCC 1 cut(s) 821
PsuI RGATCY 2 cut(s) 214, 909
PvuI CGATCG 1 cut(s) 71
PvuII CAGCTG 2 cut(s) 205, 575
RsaI GTAC 5 cut(s) 44, 283, 525, 757, 799
RsaNI GTAC 5 cut(s) 43, 282, 524, 756, 798
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 3 cut(s) 327, 411, 696
SatI GCNGC 2 cut(s) 203, 299
Sau3AI GATC 5 cut(s) 68, 118, 214, 277, 909
Sau96I GGNCC 1 cut(s) 821
ScaI AGTACT 1 cut(s) 525
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 2 cut(s) 186, 357
SfaNI GCATC 2 cut(s) 113, 814
SmiMI CAYNNNNRTG 1 cut(s) 156
SphI GCATGC 1 cut(s) 227
Sse9I AATT 9 cut(s) 173, 383, 390, 417, 453, 477, 594, 693, 810
SsiI CCGC 2 cut(s) 126, 305
SspMI CTAG 2 cut(s) 129, 302
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 6 cut(s) 47, 262, 731, 764, 802, 836
TaiI ACGT 2 cut(s) 410, 686
TasI AATT 9 cut(s) 173, 383, 390, 417, 453, 477, 594, 693, 810
TatI WGTACW 2 cut(s) 523, 755
TfiI GAWTC 3 cut(s) 25, 635, 847
Tru1I TTAA 3 cut(s) 327, 411, 696
Tru9I TTAA 3 cut(s) 327, 411, 696
TscAI CASTG 5 cut(s) 247, 319, 736, 807, 841
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 2 cut(s) 202, 298
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 4 cut(s) 465, 757, 845, 909
TspRI CASTG 5 cut(s) 247, 319, 736, 807, 841
XapI RAATTY 2 cut(s) 477, 810
XceI RCATGY 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 2 cut(s) 129, 302
ZrmI AGTACT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.