Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008473

Physical Location & Seq

Genomic Coordinates Forward (+)

35025433 .. 35028590

Gene Structure 3158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAACAAGATGACGCCGTTCAAGAATCTCCACAGCAGAGAGTACCGTGTTCATCAGAAAGAGGTGCGGTCGGTGGCCTGGAACTTCACCGGGACCAAGCTCGCCTCAGGTTCCGAGGATCTGACCGCTAGGGTTTGGCACATTGAGCCTCATGGAAATATGTCGCAGCGAAACTTTGTTGATTTGAAGGGGCACAAGGAGAGTGTGGAGCAGCTGTGTTGGGATCCGAAGCATGCCGATTTGGTTGCTACTGCCTCTGTGGACAAAACAGTTCGTCTGTGGGATGATCGGACCGGGAAGTGTGCGCGGCTAGTGAAACTTAGTGGCCCTAACATTAACATTGCGTATAAACCTGATGGCGAACACATAGCTGTTGTTAATACGAACAATGAATTGACTATTTTGGATGTTCGGGGATTTAAGCCAATTCACAAGAAGAAGTTCAATTGCGAGGTTAATGAAATTGCTTGGAACATAACAAGTGATATTTTGTTCGTGACAACTGGAAAGGATGACAAAGGAGATGAGAAAGGCATTGTTCAAGTACTATCATACCCATCTCTTCAACCACTTGACAATCTCACGGCTCACACAGCTGGTTGCAATTGCATTGCAATTGATCCTTGTGGAAGATATGTTGCTGTTGGGAGTGCCGATTCCTTGGTCAGCCTATGGGATATCTCAGAGATGCTCTGTGTGCGAACTTTTACAAACATTGAATCTGCTGTGAGGACAGTAAGCTTCAACCAGAGTGGAGAGTATCTTGCTTCTGGTAGTATAGACTGTTTCATTGACATAGCAAATGTGCAAACTGGGCGTACAGTGCATCAAATTCCATGTGGGCCTGCCGTGAACAGTGTTGACTGGAATCCTACAAGCAATCTACTTGCATATGCTGGGGATGACAACATCAAAGGTATTGTTAGGGTCTTCGGCTTCACAAGCGCGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

318

Amino Acids

34.98

Weight (kDa)

6.36

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	2 - 82	7.3e-08	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	5 - 161	4.9e-06	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	6 - 100	6.3e-08	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	7 - 52	1.2e-07	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	7 - 246	1.9e-89	THOC3 beta-propeller domain
WD40	PF00400	9 - 42	3.8e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	9 - 93	8.3e-08	CAF1B/HIR1 beta-propeller domain
Beta-prop_Aladin	PF25460	11 - 116	4.1e-07	Aladin seven-bladed propeller
Beta-prop_EML_2	PF23414	19 - 114	5.2e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	19 - 173	4e-08	WDR19 first beta-propeller
DUF7099	PF23388	58 - 177	4.7e-06	Domain of unknown function (DUF7099)
WD40_WDHD1_1st	PF24817	60 - 252	1.6e-21	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	61 - 244	2.3e-19	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	61 - 224	1.5e-21	WDR5 beta-propeller domain
EIF3I	PF24805	88 - 202	5.9e-07	EIF3I
Beta-prop_EML_2	PF23414	112 - 244	5.8e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	126 - 258	6.3e-21	WDR5 beta-propeller domain
WD40	PF00400	136 - 173	6.3e-08	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	139 - 250	2.9e-14	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	140 - 220	1e-08	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	143 - 249	2.4e-15	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	143 - 264	8.5e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	149 - 251	1.3e-09	WDR36/Utp21 second beta-propeller domain
WDR55	PF24796	152 - 257	1.6e-06	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56130
fragaria_vesca	FvH4_3g41760 FvH4_3g41780 FvH4_3g41780 FvH4_3g41780
malus_domestica	MD11G1042100.v1.1
prunus_persica	Prupe.6G033200_v2.0.a1 Prupe.6G033200_v2.0.a1
pyrus_communis	pycom03g03140 pycom11g03620
rosa_chinensis	RchiOBHm_Chr5g0074851 RchiOBHm_Chr5g0074871
rosa_laevigata	RLG00000036510 RLG00000036512
rosa_multiflora	Rmu_sc0003945.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006700 Rroxscaffold_1G00006730
rosa_rugosa	Rorug05G0434900 Rorug05G0435300
rosa_samantha	Rh5AG492200 Rh5AG492400
rosa_wichuraiana	Rw5G045600 Rw5G045630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	307, 947
AciI	CCGC	4 cut(s)	67, 126, 307, 947
AclWI	GGATC	4 cut(s)	126, 218, 231, 614
AcsI	RAATTY	1 cut(s)	831
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	3 cut(s)	44, 546, 820
AgsI	TTSAA	7 cut(s)	22, 187, 445, 542, 566, 719, 745
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	5 cut(s)	100, 214, 371, 596, 741
AluI	AGCT	5 cut(s)	100, 214, 371, 596, 741
AlwI	GGATC	4 cut(s)	126, 218, 231, 614
AoxI	GGCC	3 cut(s)	75, 325, 842
ApeKI	GCWGC	2 cut(s)	166, 211
ApoI	RAATTY	1 cut(s)	831
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	2 cut(s)	307, 947
AspS9I	GGNCC	4 cut(s)	93, 291, 326, 842
AsuC2I	CCSGG	2 cut(s)	91, 295
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	93, 291
AxyI	CCTNAGG	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	922
BbvI	GCAGC	2 cut(s)	178, 223
BccI	CCATC	2 cut(s)	350, 565
BceAI	ACGGC	2 cut(s)	600, 833
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	79
BcnI	CCSGG	2 cut(s)	91, 295
BfaI	CTAG	2 cut(s)	129, 311
BisI	GCNGC	3 cut(s)	167, 212, 308
BlsI	GCNGC	3 cut(s)	168, 213, 309
BmcAI	AGTACT	1 cut(s)	546
Bme1390I	CCNGG	3 cut(s)	79, 91, 295
Bme18I	GGWCC	2 cut(s)	93, 291
BmgT120I	GGNCC	4 cut(s)	93, 291, 326, 842
BmiI	GGNNCC	3 cut(s)	94, 112, 225
BmrFI	CCNGG	3 cut(s)	79, 91, 295
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	2 cut(s)	678, 835
BmuI	ACTGGG	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	922
BpuMI	CCSGG	2 cut(s)	91, 295
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	114, 660
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bse1I	ACTGG	3 cut(s)	508, 817, 869
Bse21I	CCTNAGG	1 cut(s)	106
Bse3DI	GCAATG	2 cut(s)	339, 609
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	114, 660
BseGI	GGATG	4 cut(s)	289, 412, 517, 907
BseMI	GCAATG	2 cut(s)	339, 609
BseMII	CTCAG	2 cut(s)	120, 696
BseNI	ACTGG	3 cut(s)	508, 817, 869
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	178, 223
BseYI	CCCAGC	1 cut(s)	896
Bsh1236I	CGCG	2 cut(s)	307, 947
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	77, 327, 844
BsiEI	CGRYCG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	90, 294
BslFI	GGGAC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	77, 327, 844
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	118, 223, 286, 619
BspACI	CCGC	4 cut(s)	67, 126, 307, 947
BspANI	GGCC	3 cut(s)	77, 327, 844
BspCNI	CTCAG	2 cut(s)	119, 695
BspFNI	CGCG	2 cut(s)	307, 947
BspLI	GGNNCC	3 cut(s)	94, 112, 225
BspPI	GGATC	4 cut(s)	126, 218, 231, 614
BsrDI	GCAATG	2 cut(s)	339, 609
BsrI	ACTGG	3 cut(s)	508, 817, 869
BssECI	CCNNGG	2 cut(s)	114, 660
BssMI	GATC	4 cut(s)	118, 223, 286, 619
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	6 cut(s)	47, 271, 736, 785, 823, 857
Bst6I	CTCTTC	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	102, 234, 846, 949
BstDEI	CTNAG	3 cut(s)	106, 320, 682
BstF5I	GGATG	4 cut(s)	289, 412, 517, 907
BstFNI	CGCG	2 cut(s)	307, 947
BstHHI	GCGC	2 cut(s)	307, 947
BstKTI	GATC	4 cut(s)	121, 226, 289, 622
BstMBI	GATC	4 cut(s)	118, 223, 286, 619
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	6 cut(s)	145, 593, 697, 814, 823, 942
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	3 cut(s)	77, 89, 293
BstSLI	GKGCMC	1 cut(s)	195
BstUI	CGCG	2 cut(s)	307, 947
BstV1I	GCAGC	2 cut(s)	178, 223
BstV2I	GAAGAC	1 cut(s)	922
BstX2I	RGATCY	2 cut(s)	118, 223
BstYI	RGATCY	2 cut(s)	118, 223
Bsu36I	CCTNAGG	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	77, 327, 844
BtsCI	GGATG	4 cut(s)	289, 412, 517, 907
BtsIMutI	CAGTG	2 cut(s)	828, 862
Cac8I	GCNNGC	4 cut(s)	102, 234, 846, 949
CfoI	GCGC	2 cut(s)	307, 947
Cfr13I	GGNCC	4 cut(s)	93, 291, 326, 842
CpoI	CGGWCCG	1 cut(s)	291
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	43, 545, 819
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CspI	CGGWCCG	1 cut(s)	291
CviAII	CATG	3 cut(s)	152, 233, 837
CviQI	GTAC	3 cut(s)	43, 545, 819
DdeI	CTNAG	3 cut(s)	106, 320, 682
DpnI	GATC	4 cut(s)	120, 225, 288, 621
DpnII	GATC	4 cut(s)	118, 223, 286, 619
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	660
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	2 cut(s)	93, 291
Eco81I	CCTNAGG	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	3 cut(s)	155, 236, 840
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	3 cut(s)	151, 232, 836
FauI	CCCGC	1 cut(s)	940
FauNDI	CATATG	1 cut(s)	892
Fnu4HI	GCNGC	3 cut(s)	167, 212, 308
FokI	GGATG	4 cut(s)	296, 419, 524, 914
Fsp4HI	GCNGC	3 cut(s)	167, 212, 308
FspBI	CTAG	2 cut(s)	129, 311
GlaI	GCGC	2 cut(s)	306, 946
GluI	GCNGC	3 cut(s)	167, 212, 308
GsaI	CCCAGC	1 cut(s)	900
HaeIII	GGCC	3 cut(s)	77, 327, 844
HapII	CCGG	2 cut(s)	90, 294
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	2 cut(s)	307, 947
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	155, 236, 840
Hin6I	GCGC	2 cut(s)	305, 945
HinP1I	GCGC	2 cut(s)	305, 945
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	739
HinfI	GANTC	4 cut(s)	25, 656, 719, 868
HpaII	CCGG	2 cut(s)	90, 294
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	3 cut(s)	262, 853, 862
Hpy188I	TCNGA	6 cut(s)	57, 115, 123, 228, 291, 685
Hpy188III	TCNNGA	2 cut(s)	22, 496
Hpy8I	GTNNAC	3 cut(s)	262, 853, 862
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	6 cut(s)	47, 271, 736, 785, 823, 857
HpyCH4V	TGCA	6 cut(s)	603, 609, 614, 808, 826, 890
HpyF10VI	GCNNNNNNNGC	6 cut(s)	145, 593, 697, 814, 823, 942
HpyF3I	CTNAG	3 cut(s)	106, 320, 682
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	155, 236, 840
HspAI	GCGC	2 cut(s)	305, 945
Kzo9I	GATC	4 cut(s)	118, 223, 286, 619
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	2 cut(s)	178, 223
LweI	GCATC	2 cut(s)	678, 835
MaeI	CTAG	2 cut(s)	129, 311
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	4 cut(s)	120, 225, 288, 621
MboI	GATC	4 cut(s)	118, 223, 286, 619
MboII	GAAGA	4 cut(s)	448, 554, 642, 922
MfeI	CAATTG	3 cut(s)	445, 604, 615
MflI	RGATCY	2 cut(s)	118, 223
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	7 cut(s)	392, 426, 445, 462, 604, 615, 831
MnlI	CCTC	7 cut(s)	55, 109, 115, 159, 265, 445, 723
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	4 cut(s)	336, 378, 420, 456
MspA1I	CMGCKG	2 cut(s)	214, 596
MspI	CCGG	2 cut(s)	90, 294
MspR9I	CCNGG	3 cut(s)	79, 91, 295
MunI	CAATTG	3 cut(s)	445, 604, 615
MvaI	CCWGG	1 cut(s)	79
MvnI	CGCG	2 cut(s)	307, 947
MwoI	GCNNNNNNNGC	6 cut(s)	145, 593, 697, 814, 823, 942
NciI	CCSGG	2 cut(s)	91, 295
NdeI	CATATG	1 cut(s)	892
NdeII	GATC	4 cut(s)	118, 223, 286, 619
NlaIII	CATG	3 cut(s)	155, 236, 840
NlaIV	GGNNCC	3 cut(s)	94, 112, 225
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	4 cut(s)	25, 656, 719, 868
PkrI	GCNGC	3 cut(s)	168, 213, 309
Psp6I	CCWGG	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	94, 112, 225
PspPI	GGNCC	4 cut(s)	93, 291, 326, 842
PsuI	RGATCY	2 cut(s)	118, 223
PvuII	CAGCTG	2 cut(s)	214, 596
RsaI	GTAC	3 cut(s)	44, 546, 820
RsaNI	GTAC	3 cut(s)	43, 545, 819
Rsr2I	CGGWCCG	1 cut(s)	291
RsrII	CGGWCCG	1 cut(s)	291
SaqAI	TTAA	4 cut(s)	336, 378, 420, 456
SatI	GCNGC	3 cut(s)	167, 212, 308
Sau3AI	GATC	4 cut(s)	118, 223, 286, 619
Sau96I	GGNCC	4 cut(s)	93, 291, 326, 842
ScaI	AGTACT	1 cut(s)	546
ScrFI	CCNGG	3 cut(s)	79, 91, 295
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	678, 835
SinI	GGWCC	2 cut(s)	93, 291
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	7 cut(s)	392, 426, 445, 462, 604, 615, 831
SsiI	CCGC	4 cut(s)	67, 126, 307, 947
SspMI	CTAG	2 cut(s)	129, 311
StyD4I	CCNGG	3 cut(s)	77, 89, 293
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	6 cut(s)	47, 271, 736, 785, 823, 857
TasI	AATT	7 cut(s)	392, 426, 445, 462, 604, 615, 831
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	4 cut(s)	25, 656, 719, 868
Tru1I	TTAA	4 cut(s)	336, 378, 420, 456
Tru9I	TTAA	4 cut(s)	336, 378, 420, 456
TscAI	CASTG	2 cut(s)	828, 862
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	2 cut(s)	166, 211
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	5 cut(s)	17, 41, 405, 474, 778
TspRI	CASTG	2 cut(s)	828, 862
VpaK11BI	GGWCC	2 cut(s)	93, 291
XapI	RAATTY	1 cut(s)	831
XceI	RCATGY	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	2 cut(s)	129, 311
ZrmI	AGTACT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.