Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008473

Physical Location & Seq

Genomic Coordinates Reverse (-)

2497894 .. 2500587

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03140.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCAGAAACGGAGGAACCCACAATACCCTTTAAGAATCTGAGTAGCAGAGAGTACCTGGGCCACAAGAAGAAGGTGCATTCTGTGGCTTGGAACTGCACGGGGACGAAGCTCGCGTCGGGTTCTGTTGATCGATCCGCTAGGGTTTGGCACATTGAGCCCCATGGACATGGTAAGGCTAAAGATATTGAATTGAAGGGGCACACAGATAGTGTGGATCAGCTGTGTTGGGACCCCAAGCATGCTGATTTGATTGCCACTGCCTCTGGGGACAAGACGGTTCGTCTTTGGGACGCTCGGAGTGGAAAATGTGCACAGCTAACAGAACTTAGCGGGGAGAACATCAATATCACCTATAAACCTGATGGGACACACATCGCCGTTGGTAATAGGGATGATGAACTAACAATTTTGGATGTTCGGAAGTTTAAGCCAATTCACAAACGAAAGTTCAATTATGAGGTTAATGAAATTGCTTGGAGCACAACAAGTGAAATTTTCTTCTTGACAACTGGAAACGGTACGGTTGAAGTACTAGCATACCCATCTCTTAAACCGGTCGACACTCTCATGGCTCATACAGCTGGTTGTTATTGCATTGCCATTGACCCACTTGGAAGATATTTTGCTGTTGGGAGTGCTGATTCCTTGGTCAGCCTGTGGGATATCTCAGAGATGCTCTGTGTGAAAACATTTCCAAAACTTGAATCACCTGTGAGGACAATAAGCTTCAACCACACTGGAGAGTATCTTGCGTCTGCCAGTGAAGACTTATTCATTGACATATCAAATGTTCAAACCGGGCGGACAGTACATCAGATTCCATGTAGGGCAGCCATGAACAGCGTTGAGTGGAATCCCAAATCCAATCTACTTGCATATGCTGGAGATGACAAGAACAAATATCAAACTGATGAAGGTGTTTTTAGGATATTTGGCTTCAAAAGTGCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

319

Amino Acids

35.33

Weight (kDa)

6.31

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56130
fragaria_vesca	FvH4_3g41760 FvH4_3g41780 FvH4_3g41780 FvH4_3g41780
malus_domestica	MD11G1042100.v1.1
prunus_persica	Prupe.6G033200_v2.0.a1 Prupe.6G033200_v2.0.a1
pyrus_communis	pycom03g03140 pycom11g03620
rosa_chinensis	RchiOBHm_Chr5g0074851 RchiOBHm_Chr5g0074871
rosa_laevigata	RLG00000036510 RLG00000036512
rosa_multiflora	Rmu_sc0003945.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006700 Rroxscaffold_1G00006730
rosa_rugosa	Rorug05G0434900 Rorug05G0435300
rosa_samantha	Rh5AG492200 Rh5AG492400
rosa_wichuraiana	Rw5G045600 Rw5G045630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	116
AciI	CCGC	3 cut(s)	138, 333, 805
AclWI	GGATC	2 cut(s)	129, 225
AcsI	RAATTY	1 cut(s)	495
AfaI	GTAC	4 cut(s)	56, 523, 534, 813
AgeI	ACCGGT	1 cut(s)	556
AgsI	TTSAA	8 cut(s)	191, 196, 454, 530, 707, 733, 797, 943
AhdI	GACNNNNNGTC	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	5 cut(s)	112, 223, 319, 584, 729
AluI	AGCT	5 cut(s)	112, 223, 319, 584, 729
Alw21I	GWGCWC	2 cut(s)	316, 485
Alw44I	GTGCAC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	129, 225
AoxI	GGCC	1 cut(s)	61
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	1 cut(s)	495
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AsiGI	ACCGGT	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	61, 232
AsuC2I	CCSGG	1 cut(s)	802
AsuHPI	GGTGA	2 cut(s)	343, 702
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	2 cut(s)	204, 316
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	774
Bbv12I	GWGCWC	2 cut(s)	316, 485
BbvI	GCAGC	1 cut(s)	845
BccI	CCATC	2 cut(s)	359, 553
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	802
BfaI	CTAG	2 cut(s)	141, 536
BisI	GCNGC	1 cut(s)	834
BlsI	GCNGC	1 cut(s)	835
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	59, 802
Bme18I	GGWCC	1 cut(s)	232
BmeRI	GACNNNNNGTC	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	61, 232
BmiI	GGNNCC	3 cut(s)	18, 233, 234
BmrFI	CCNGG	2 cut(s)	59, 802
BmsI	GCATC	1 cut(s)	666
BpiI	GAAGAC	1 cut(s)	774
BpmI	CTGGAG	2 cut(s)	762, 906
BpuMI	CCSGG	1 cut(s)	802
Bsa29I	ATCGAT	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	58, 163, 648
BsaWI	WCCGGW	1 cut(s)	556
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	3 cut(s)	517, 745, 762
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	133
BseDI	CCNNGG	3 cut(s)	58, 163, 648
BseGI	GGATG	2 cut(s)	400, 421
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	2 cut(s)	32, 684
BseNI	ACTGG	3 cut(s)	517, 745, 762
BseSI	GKGCMC	2 cut(s)	204, 316
BseXI	GCAGC	1 cut(s)	845
BsgI	GTGCAG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	63
BshTI	ACCGGT	1 cut(s)	556
BshVI	ATCGAT	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	561
BsiHKAI	GWGCWC	2 cut(s)	316, 485
BsiSI	CCGG	2 cut(s)	557, 801
BslFI	GGGAC	5 cut(s)	118, 245, 284, 305, 382
BsmFI	GGGAC	5 cut(s)	118, 245, 284, 305, 382
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	4 cut(s)	162, 204, 316, 485
Bsp143I	GATC	3 cut(s)	130, 134, 217
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	3 cut(s)	138, 333, 805
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	2 cut(s)	33, 683
BspDI	ATCGAT	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	3 cut(s)	18, 233, 234
BspPI	GGATC	2 cut(s)	129, 225
BsrDI	GCAATG	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	3 cut(s)	517, 745, 762
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	58, 163, 648
BssMI	GATC	3 cut(s)	130, 134, 217
BssT1I	CCWWGG	2 cut(s)	163, 648
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	280, 521, 526, 811
BstC8I	GCNNGC	2 cut(s)	114, 243
BstDEI	CTNAG	3 cut(s)	41, 329, 670
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	400, 421
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	3 cut(s)	133, 137, 220
BstMBI	GATC	3 cut(s)	130, 134, 217
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 581
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	57, 800
BstSLI	GKGCMC	2 cut(s)	204, 316
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	845
BstV2I	GAAGAC	1 cut(s)	774
BstXI	CCANNNNNNTGG	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	63
BsuTUI	ATCGAT	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	400, 421
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	258, 738, 769
Cac8I	GCNNGC	2 cut(s)	114, 243
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	61, 232
ClaI	ATCGAT	1 cut(s)	133
CseI	GACGC	3 cut(s)	105, 302, 744
Csp6I	GTAC	4 cut(s)	55, 522, 533, 812
CspAI	ACCGGT	1 cut(s)	556
CviAII	CATG	6 cut(s)	164, 170, 242, 571, 825, 838
CviQI	GTAC	4 cut(s)	55, 522, 533, 812
DdeI	CTNAG	3 cut(s)	41, 329, 670
DpnI	GATC	3 cut(s)	132, 136, 219
DpnII	GATC	3 cut(s)	130, 134, 217
DriI	GACNNNNNGTC	1 cut(s)	282
Eam1105I	GACNNNNNGTC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	820
Eco130I	CCWWGG	2 cut(s)	163, 648
Eco24I	GRGCYC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	2 cut(s)	163, 648
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	2 cut(s)	163, 648
FaeI	CATG	6 cut(s)	167, 173, 245, 574, 828, 841
FaqI	GGGAC	5 cut(s)	118, 245, 284, 305, 382
FatI	CATG	6 cut(s)	163, 169, 241, 570, 824, 837
FauI	CCCGC	1 cut(s)	326
FauNDI	CATATG	1 cut(s)	880
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	834
FokI	GGATG	2 cut(s)	407, 428
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	834
FspBI	CTAG	2 cut(s)	141, 536
GluI	GCNGC	1 cut(s)	834
GsuI	CTGGAG	2 cut(s)	762, 906
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	557, 801
HgaI	GACGC	3 cut(s)	105, 302, 744
Hin1II	CATG	6 cut(s)	167, 173, 245, 574, 828, 841
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	5 cut(s)	37, 644, 707, 820, 856
HpaII	CCGG	2 cut(s)	557, 801
HphI	GGTGA	2 cut(s)	343, 702
Hpy166II	GTNNAC	2 cut(s)	314, 562
Hpy188I	TCNGA	5 cut(s)	42, 300, 423, 673, 819
Hpy188III	TCNNGA	1 cut(s)	505
Hpy8I	GTNNAC	2 cut(s)	314, 562
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	67, 190, 911
HpyCH4III	ACNGT	4 cut(s)	280, 521, 526, 811
HpyCH4V	TGCA	6 cut(s)	79, 99, 314, 597, 878, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 581
HpyF3I	CTNAG	3 cut(s)	41, 329, 670
Hsp92II	CATG	6 cut(s)	167, 173, 245, 574, 828, 841
KflI	GGGWCCC	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	130, 134, 217
LmnI	GCTCC	1 cut(s)	480
Lsp1109I	GCAGC	1 cut(s)	845
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	2 cut(s)	141, 536
MalI	GATC	3 cut(s)	132, 136, 219
MboI	GATC	3 cut(s)	130, 134, 217
MboII	GAAGA	4 cut(s)	82, 493, 630, 779
MhlI	GDGCHC	4 cut(s)	162, 204, 316, 485
MluCI	AATT	6 cut(s)	191, 408, 435, 454, 471, 495
MnlI	CCTC	4 cut(s)	7, 274, 454, 711
MseI	TTAA	4 cut(s)	33, 429, 465, 552
MslI	CAYNNNNRTG	2 cut(s)	168, 569
MspA1I	CMGCKG	2 cut(s)	223, 584
MspI	CCGG	2 cut(s)	557, 801
MspR9I	CCNGG	2 cut(s)	59, 802
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	157, 581
NciI	CCSGG	1 cut(s)	802
NcoI	CCATGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	3 cut(s)	130, 134, 217
NlaIII	CATG	6 cut(s)	167, 173, 245, 574, 828, 841
NlaIV	GGNNCC	3 cut(s)	18, 233, 234
NspI	RCATGY	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	5 cut(s)	37, 644, 707, 820, 856
PinAI	ACCGGT	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	835
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	18, 233, 234
PspPI	GGNCC	2 cut(s)	61, 232
PspPPI	RGGWCCY	1 cut(s)	232
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
PvuII	CAGCTG	2 cut(s)	223, 584
RsaI	GTAC	4 cut(s)	56, 523, 534, 813
RsaNI	GTAC	4 cut(s)	55, 522, 533, 812
RseI	CAYNNNNRTG	2 cut(s)	168, 569
SalI	GTCGAC	1 cut(s)	560
SaqAI	TTAA	4 cut(s)	33, 429, 465, 552
SatI	GCNGC	1 cut(s)	834
Sau3AI	GATC	3 cut(s)	130, 134, 217
Sau96I	GGNCC	2 cut(s)	61, 232
ScaI	AGTACT	1 cut(s)	534
ScrFI	CCNGG	2 cut(s)	59, 802
SduI	GDGCHC	4 cut(s)	162, 204, 316, 485
SfaNI	GCATC	1 cut(s)	666
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	168, 569
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	6 cut(s)	191, 408, 435, 454, 471, 495
SsiI	CCGC	3 cut(s)	138, 333, 805
SspMI	CTAG	2 cut(s)	141, 536
StyD4I	CCNGG	2 cut(s)	57, 800
StyI	CCWWGG	2 cut(s)	163, 648
TaaI	ACNGT	4 cut(s)	280, 521, 526, 811
TaqI	TCGA	2 cut(s)	133, 561
TasI	AATT	6 cut(s)	191, 408, 435, 454, 471, 495
TatI	WGTACW	2 cut(s)	532, 811
TfiI	GAWTC	5 cut(s)	37, 644, 707, 820, 856
Tru1I	TTAA	4 cut(s)	33, 429, 465, 552
Tru9I	TTAA	4 cut(s)	33, 429, 465, 552
TscAI	CASTG	3 cut(s)	265, 745, 769
TseI	GCWGC	1 cut(s)	833
TspDTI	ATGAA	5 cut(s)	414, 483, 766, 854, 930
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	3 cut(s)	265, 745, 769
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	2 cut(s)	141, 536
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.