RLG00000036512

THO complex subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
81444562 .. 81447341
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036512

Sequence Viewer

Length: 927 bp
ATGGAGAAGACGACGCCGTTCAAGAATCTCCTAAGCAGAGAGTACCGTGTCCACGAGAAGGAGGTGCGATCGGTGGCTTGGAACTTCACCGGAACCAAGCTCGCCTCGGGTTCTGAGGATCAGACAGCTAGGGTTTGGCACATTGAGCCTCATGGAAATGGTAACTCTGTTGAATTGAAGGGGCACAGGGATAGTGTGGAGCAGCTGTGTTGGGATCCCAAGCATGCCGAGTTGGTTGCCACTGCCTCTATGGACAAAACTGTTCGTCTCTGGGATGATCGTACCGGGAAGTGTGTGCAGCTAGCGGAACTTAGTGGCCTGAACATTAACATTGCATATAAACCTGATGGCGAGCTCATAGCAGTAGGTGATACGAACAACGAATTGACAATTTTGGATGTTCGGACGTTTAAGCCAATTCACAAGAGGAAGTTCCATTACGAGGTAAATGAAATTGCTTGGAACACTACAAGTGATATTTTGTTCGTGACAACTGGAAAGGGCGTTGTTGAAGTATTATCATACCCATCTCTTCAACCACTTGACAGGCTCATGGCTCATACAGCTGGTTGCCATTGCATTGCAATTGACCCATGTGGAAGATATTTTGCTGTTGGGAGTGCCGATTCCTTGGTCAGCCTATGGGATACCTCGGAGTTGCTCTGTGTGCGAACGTTTACAAAAATTAAATCGGCTGTGAGGACAATAAGCTTCAACCACAGTGGAGAGTATCTTGCTTCTGGCAGTACAGACTGTTTCATTGACATATCAAATGTTCAAACTGGGCGTACAGTGCATCAAATTCCATGTGGGCCTGCCATGAACAGTGTTGACTGGAACCCTAAAAGCAATCTACTTGCATATGCTGGGAAGGACAACATCAATGAAGGTATTGTGAGGATCTTCGGCTTCACAAGCGCGTGCTAA

Protein Analysis

309

Amino Acids

34.19

Weight (kDa)

6.26

Isoelectric Point (pI)

26.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 12 - 100 4.3e-17 WDR5 beta-propeller domain
WD40_Gbeta PF25391 12 - 138 8.6e-08 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 12 - 100 6.2e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 13 - 168 1.6e-06 WDR36/Utp21 first beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 13 - 102 1.1e-11 CAF1B/HIR1 beta-propeller domain
WDR55 PF24796 13 - 135 1.6e-08 WDR55
WD40_Prp19 PF24814 13 - 140 5.5e-19 Prp19 WD40 domain
WD40 PF00400 13 - 46 9.6e-08 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 15 - 132 2e-18 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 18 - 289 1e-113 THOC3 beta-propeller domain
EIF3I PF24805 18 - 123 3.1e-09 EIF3I
Beta-prop_Aladin PF25460 19 - 270 8.3e-12 Aladin seven-bladed propeller
WD40_WDHD1_1st PF24817 20 - 102 5.9e-12 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 22 - 145 7.2e-09 TEP-1 second beta-propeller
WDR55 PF24796 56 - 218 7.2e-09 WDR55
WD40 PF00400 58 - 92 4.2e-07 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 69 - 173 5.1e-12 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st PF23389 69 - 218 8.3e-11 WDR19 first beta-propeller
ANAPC4_WD40 PF12894 110 - 156 5.6e-06 Anaphase-promoting complex subunit 4 WD40 domain
WD40_CDC20-Fz PF24807 110 - 289 1.7e-22 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 111 - 292 3.3e-24 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 134 - 288 4.6e-16 Echinoderm microtubule-associated protein second beta-propeller
EIF3I PF24805 138 - 245 2.3e-07 EIF3I
Beta-prop_IFT122_1st PF23381 144 - 267 1.2e-06 IFT122 first beta-propeller
WD40_Prp19 PF24814 146 - 292 2.4e-16 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 158 - 294 2.2e-16 WDHD1 first WD40 domain
WD40 PF00400 179 - 216 1.5e-06 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 183 - 293 6.4e-14 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 184 - 296 4.4e-09 G protein beta WD-40 repeat protein
WDR55 PF24796 194 - 268 1e-05 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 204 - 294 3.5e-07 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 920
AciI CCGC 1 cut(s) 305
AclI AACGTT 1 cut(s) 674
AclWI GGATC 4 cut(s) 126, 209, 222, 908
AcsI RAATTY 1 cut(s) 801
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 4 cut(s) 44, 283, 748, 790
AfiI CCNNNNNNNGG 2 cut(s) 58, 442
AgsI TTSAA 7 cut(s) 22, 173, 178, 512, 536, 715, 779
AluBI AGCT 7 cut(s) 100, 128, 205, 301, 355, 566, 711
AluI AGCT 7 cut(s) 100, 128, 205, 301, 355, 566, 711
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 4 cut(s) 126, 209, 222, 908
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 2 cut(s) 316, 812
ApeKI GCWGC 2 cut(s) 202, 298
ApoI RAATTY 1 cut(s) 801
AspLEI GCGC 1 cut(s) 920
AspS9I GGNCC 1 cut(s) 812
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 79, 380
AsuNHI GCTAGC 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 357
BarI GAAGNNNNNNTAC 2 cut(s) 422, 454
BauI CACGAG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 214, 310
BccI CCATC 2 cut(s) 341, 535
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciVI GTATCC 1 cut(s) 640
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 129, 302
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 2 cut(s) 203, 299
BlsI GCNGC 2 cut(s) 204, 300
Bme1390I CCNGG 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 812
BmiI GGNNCC 3 cut(s) 94, 216, 839
BmrFI CCNGG 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 792
BmsI GCATC 1 cut(s) 805
BmtI GCTAGC 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 286
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 105, 630, 651
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 442
Bse1I ACTGG 3 cut(s) 499, 787, 839
Bse3DI GCAATG 3 cut(s) 330, 574, 579
BseDI CCNNGG 3 cut(s) 105, 630, 651
BseGI GGATG 2 cut(s) 280, 403
BseLI CCNNNNNNNGG 2 cut(s) 58, 442
BseMI GCAATG 3 cut(s) 330, 574, 579
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 3 cut(s) 499, 787, 839
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 2 cut(s) 214, 310
BseYI CCCAGC 1 cut(s) 866
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 920
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 318, 814
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 90, 285
BslI CCNNNNNNNGG 2 cut(s) 58, 442
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
BsnI GGCC 2 cut(s) 318, 814
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 186, 357
Bsp143I GATC 5 cut(s) 68, 118, 214, 277, 900
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 318, 814
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 1 cut(s) 920
BspLI GGNNCC 3 cut(s) 94, 216, 839
BspOI GCTAGC 1 cut(s) 305
BspPI GGATC 4 cut(s) 126, 209, 222, 908
BsrDI GCAATG 3 cut(s) 330, 574, 579
BsrI ACTGG 3 cut(s) 499, 787, 839
BssECI CCNNGG 3 cut(s) 105, 630, 651
BssMI GATC 5 cut(s) 68, 118, 214, 277, 900
BssNI GRCGYC 1 cut(s) 14
BssSI CACGAG 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 630
Bst2BI CACGAG 1 cut(s) 53
Bst4CI ACNGT 6 cut(s) 47, 262, 722, 755, 793, 827
Bst6I CTCTTC 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 6 cut(s) 102, 225, 303, 353, 816, 922
BstDEI CTNAG 3 cut(s) 32, 114, 311
BstF5I GGATG 2 cut(s) 280, 403
BstFNI CGCG 1 cut(s) 920
BstHHI GCGC 1 cut(s) 920
BstKTI GATC 5 cut(s) 71, 121, 217, 280, 903
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 5 cut(s) 68, 118, 214, 277, 900
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 5 cut(s) 145, 563, 667, 793, 915
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 284
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 920
BstV1I GCAGC 2 cut(s) 214, 310
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 214, 900
BstYI RGATCY 2 cut(s) 214, 900
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 2 cut(s) 318, 814
BtsCI GGATG 2 cut(s) 280, 403
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 4 cut(s) 240, 727, 798, 832
Cac8I GCNNGC 6 cut(s) 102, 225, 303, 353, 816, 922
CfoI GCGC 1 cut(s) 920
Cfr13I GGNCC 1 cut(s) 812
CseI GACGC 1 cut(s) 22
Csp6I GTAC 4 cut(s) 43, 282, 747, 789
CspCI CAANNNNNGTGG 2 cut(s) 703, 738
CviAII CATG 6 cut(s) 152, 224, 553, 594, 807, 820
CviQI GTAC 4 cut(s) 43, 282, 747, 789
DdeI CTNAG 3 cut(s) 32, 114, 311
DpnI GATC 5 cut(s) 70, 120, 216, 279, 902
DpnII GATC 5 cut(s) 68, 118, 214, 277, 900
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 630
Eco24I GRGCYC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 630
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 630
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 6 cut(s) 155, 227, 556, 597, 810, 823
FatI CATG 6 cut(s) 151, 223, 552, 593, 806, 819
FauNDI CATATG 1 cut(s) 862
Fnu4HI GCNGC 2 cut(s) 203, 299
FokI GGATG 2 cut(s) 287, 410
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 203, 299
FspBI CTAG 2 cut(s) 129, 302
GlaI GCGC 1 cut(s) 919
GluI GCNGC 2 cut(s) 203, 299
GsaI CCCAGC 1 cut(s) 870
HaeIII GGCC 2 cut(s) 318, 814
HapII CCGG 2 cut(s) 90, 285
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 920
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 6 cut(s) 155, 227, 556, 597, 810, 823
Hin6I GCGC 1 cut(s) 918
HinP1I GCGC 1 cut(s) 918
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 2 cut(s) 25, 626
HpaII CCGG 2 cut(s) 90, 285
HphI GGTGA 2 cut(s) 79, 380
Hpy166II GTNNAC 3 cut(s) 52, 678, 832
Hpy188I TCNGA 4 cut(s) 115, 123, 405, 655
Hpy188III TCNNGA 2 cut(s) 22, 487
Hpy8I GTNNAC 3 cut(s) 52, 678, 832
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 52, 172, 865, 881
HpyCH4III ACNGT 6 cut(s) 47, 262, 722, 755, 793, 827
HpyCH4IV ACGT 2 cut(s) 407, 674
HpyCH4V TGCA 6 cut(s) 298, 335, 579, 584, 796, 860
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 563, 667, 793, 915
HpyF3I CTNAG 3 cut(s) 32, 114, 311
HpySE526I ACGT 2 cut(s) 407, 674
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 155, 227, 556, 597, 810, 823
HspAI GCGC 1 cut(s) 918
Kzo9I GATC 5 cut(s) 68, 118, 214, 277, 900
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 2 cut(s) 214, 310
LweI GCATC 1 cut(s) 805
MaeI CTAG 2 cut(s) 129, 302
MaeII ACGT 2 cut(s) 407, 674
MaeIII GTNAC 2 cut(s) 161, 487
MalI GATC 5 cut(s) 70, 120, 216, 279, 902
MboI GATC 5 cut(s) 68, 118, 214, 277, 900
MboII GAAGA 4 cut(s) 19, 524, 612, 895
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 2 cut(s) 214, 900
MhlI GDGCHC 2 cut(s) 186, 357
MluCI AATT 8 cut(s) 173, 383, 390, 417, 453, 585, 684, 801
MseI TTAA 3 cut(s) 327, 411, 687
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 205, 566
MspI CCGG 2 cut(s) 90, 285
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 585
MvnI CGCG 1 cut(s) 920
MwoI GCNNNNNNNGC 5 cut(s) 145, 563, 667, 793, 915
NciI CCSGG 1 cut(s) 286
NdeI CATATG 1 cut(s) 862
NdeII GATC 5 cut(s) 68, 118, 214, 277, 900
NheI GCTAGC 1 cut(s) 301
NlaIII CATG 6 cut(s) 155, 227, 556, 597, 810, 823
NlaIV GGNNCC 3 cut(s) 94, 216, 839
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 487
NspI RCATGY 1 cut(s) 227
PaeI GCATGC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 25, 626
PkrI GCNGC 2 cut(s) 204, 300
Ple19I CGATCG 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 674
PspFI CCCAGC 1 cut(s) 866
PspN4I GGNNCC 3 cut(s) 94, 216, 839
PspPI GGNCC 1 cut(s) 812
PsuI RGATCY 2 cut(s) 214, 900
PvuI CGATCG 1 cut(s) 71
PvuII CAGCTG 2 cut(s) 205, 566
RsaI GTAC 4 cut(s) 44, 283, 748, 790
RsaNI GTAC 4 cut(s) 43, 282, 747, 789
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 3 cut(s) 327, 411, 687
SatI GCNGC 2 cut(s) 203, 299
Sau3AI GATC 5 cut(s) 68, 118, 214, 277, 900
Sau96I GGNCC 1 cut(s) 812
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 2 cut(s) 186, 357
SfaNI GCATC 1 cut(s) 805
SmiMI CAYNNNNRTG 1 cut(s) 156
SphI GCATGC 1 cut(s) 227
Sse9I AATT 8 cut(s) 173, 383, 390, 417, 453, 585, 684, 801
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 129, 302
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 6 cut(s) 47, 262, 722, 755, 793, 827
TaiI ACGT 2 cut(s) 410, 677
TasI AATT 8 cut(s) 173, 383, 390, 417, 453, 585, 684, 801
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 2 cut(s) 25, 626
Tru1I TTAA 3 cut(s) 327, 411, 687
Tru9I TTAA 3 cut(s) 327, 411, 687
TscAI CASTG 4 cut(s) 247, 727, 798, 832
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 2 cut(s) 202, 298
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 4 cut(s) 465, 748, 836, 900
TspRI CASTG 4 cut(s) 247, 727, 798, 832
XapI RAATTY 1 cut(s) 801
XceI RCATGY 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 2 cut(s) 129, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.