Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008473

Physical Location & Seq

Genomic Coordinates Reverse (-)

2533203 .. 2537413

Gene Structure 4211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G033200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCAGAGATGGAGGAAACCACAGTACCCTTTAAGAATCTCACTAGCAGAGAGTACCCAGGTCATAAGAAGAAGGTGCATTCTGTGGCTTGGAACTGCACGGGCACAAAGCTCGCATCGGGCTCTGTAGATCAAACCGCTAGGGTTTGGCATATTGAGCCCCACGGACATGGTAAGGTTAAAGATATTGAATTGAAGGGGCATACTGATAGTGTGGATCAGCTGTGTTGGGACCCCAAGCATGCTGATTTGATTGCCACTGCCTCTGGAGACAAGACAGTTCGTCTATGGGATGCTCGTAGTGGAAAATGTGCGCAGCTAGCAGAACTTAGTGGCGAGAACATTAACATCACCTATAAACCTGATGGGACGCACATCGCCGTTGGTAATAGGGATGATGAACTAACAATTCTAGATGTTCGGAAATTTAAGCCCATTCACAAGCGAAAGTTCAATTATGAGGTTAATGAAATTGCTTGGAGCACAACAAGTGAAATTTTCTTCTTGACAACTGGAAATGGTACTGTTGAAGTACTAGCATACCCATCTCTTCGACCAGTTGACACTCTCATGGCTCATACAGCTGGGTGTTATTGCATTGCGATTGACCCACTTGGAAGGTATTTTGCTGTTGGAAGTGCCGATTCCTTGGTCAGCCTGTGGGATATCTCAGAGATGCTCTGTGTGAGAACATTTACAAAACTTGAATCGCCTGTGAGGACAATAAGCTTCAACAACACTGGAGAGTATCTTGCTTCTGCCAGTGAAGACTTATTTATTGATATATCCAATGTTCAAACTGGGAGGACAGTGCATCAAATCCCATGTAGGGCTGCCATGAACAGTGTTGAGTGGAATCCTAAATCCAATCTGCTTGCTTATGCTGGGGATGACAAGAACAAATACCAGACCGACGAAGGTGTTTTTAGGATATTTGGCTTCAAAAACTCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

319

Amino Acids

35.38

Weight (kDa)

6.13

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56130
fragaria_vesca	FvH4_3g41760 FvH4_3g41780 FvH4_3g41780 FvH4_3g41780
malus_domestica	MD11G1042100.v1.1
prunus_persica	Prupe.6G033200_v2.0.a1 Prupe.6G033200_v2.0.a1
pyrus_communis	pycom03g03140 pycom11g03620
rosa_chinensis	RchiOBHm_Chr5g0074851 RchiOBHm_Chr5g0074871
rosa_laevigata	RLG00000036510 RLG00000036512
rosa_multiflora	Rmu_sc0003945.1_g000007
rosa_roxburghii	Rroxscaffold_1G00006700 Rroxscaffold_1G00006730
rosa_rugosa	Rorug05G0434900 Rorug05G0435300
rosa_samantha	Rh5AG492200 Rh5AG492400
rosa_wichuraiana	Rw5G045600 Rw5G045630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	315
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	425, 495
AfaI	GTAC	4 cut(s)	27, 56, 523, 534
AfiI	CCNNNNNNNGG	1 cut(s)	829
AgsI	TTSAA	8 cut(s)	191, 196, 454, 530, 707, 733, 797, 943
AhdI	GACNNNNNGTC	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	5 cut(s)	112, 223, 319, 584, 729
AluI	AGCT	5 cut(s)	112, 223, 319, 584, 729
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	316, 833
ApoI	RAATTY	2 cut(s)	425, 495
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	343
AsuNHI	GCTAGC	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	107
BaeI	ACNNNNGTAYC	2 cut(s)	9, 42
BanII	GRGCYC	2 cut(s)	125, 162
BbsI	GAAGAC	1 cut(s)	774
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	2 cut(s)	328, 820
BccI	CCATC	3 cut(s)	4, 359, 553
BceAI	ACGGC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	5 cut(s)	45, 141, 320, 413, 536
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	2 cut(s)	317, 834
BlsI	GCNGC	2 cut(s)	318, 835
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	232
BmeRI	GACNNNNNGTC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	233, 234
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	4 cut(s)	125, 283, 666, 823
BmtI	GCTAGC	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	774
BpmI	CTGGAG	2 cut(s)	288, 762
BsaJI	CCNNGG	3 cut(s)	58, 163, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse1I	ACTGG	5 cut(s)	517, 557, 745, 762, 805
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	58, 163, 648
BseGI	GGATG	3 cut(s)	298, 400, 895
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	5 cut(s)	517, 557, 745, 762, 805
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	328, 820
BseYI	CCCAGC	2 cut(s)	584, 884
BsgI	GTGCAG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	485
BslFI	GGGAC	2 cut(s)	245, 382
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	245, 382
BsmI	GAATGC	1 cut(s)	79
Bsp1286I	GDGCHC	4 cut(s)	107, 125, 162, 485
Bsp143I	GATC	2 cut(s)	130, 217
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	683
BspLI	GGNNCC	2 cut(s)	233, 234
BspOI	GCTAGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	5 cut(s)	517, 557, 745, 762, 805
BssECI	CCNNGG	3 cut(s)	58, 163, 648
BssMI	GATC	2 cut(s)	130, 217
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	5 cut(s)	25, 280, 526, 811, 845
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	4 cut(s)	114, 243, 321, 876
BstDEI	CTNAG	3 cut(s)	329, 670, 949
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	298, 400, 895
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	133, 220
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	130, 217
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 320, 581
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	328, 820
BstV2I	GAAGAC	1 cut(s)	774
BstXI	CCANNNNNNTGG	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	298, 400, 895
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	5 cut(s)	258, 738, 769, 816, 850
Cac8I	GCNNGC	4 cut(s)	114, 243, 321, 876
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	4 cut(s)	26, 55, 522, 533
CviAII	CATG	5 cut(s)	170, 242, 571, 825, 838
CviQI	GTAC	4 cut(s)	26, 55, 522, 533
DdeI	CTNAG	3 cut(s)	329, 670, 949
DpnI	GATC	2 cut(s)	132, 219
DpnII	GATC	2 cut(s)	130, 217
DriI	GACNNNNNGTC	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	2 cut(s)	125, 162
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	2 cut(s)	125, 162
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	5 cut(s)	173, 245, 574, 828, 841
FaqI	GGGAC	2 cut(s)	245, 382
FatI	CATG	5 cut(s)	169, 241, 570, 824, 837
Fnu4HI	GCNGC	2 cut(s)	317, 834
FokI	GGATG	3 cut(s)	305, 407, 902
FriOI	GRGCYC	2 cut(s)	125, 162
Fsp4HI	GCNGC	2 cut(s)	317, 834
FspBI	CTAG	5 cut(s)	45, 141, 320, 413, 536
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	2 cut(s)	317, 834
GsaI	CCCAGC	2 cut(s)	588, 888
GsuI	CTGGAG	2 cut(s)	288, 762
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	5 cut(s)	173, 245, 574, 828, 841
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	4 cut(s)	37, 644, 707, 856
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	2 cut(s)	423, 673
Hpy188III	TCNNGA	3 cut(s)	267, 413, 505
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	4 cut(s)	67, 190, 612, 911
HpyCH4III	ACNGT	5 cut(s)	25, 280, 526, 811, 845
HpyCH4V	TGCA	4 cut(s)	79, 99, 597, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 320, 581
HpyF3I	CTNAG	3 cut(s)	329, 670, 949
Hsp92II	CATG	5 cut(s)	173, 245, 574, 828, 841
HspAI	GCGC	1 cut(s)	314
KflI	GGGWCCC	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	130, 217
LmnI	GCTCC	1 cut(s)	480
Lsp1109I	GCAGC	2 cut(s)	328, 820
LweI	GCATC	4 cut(s)	125, 283, 666, 823
MaeI	CTAG	5 cut(s)	45, 141, 320, 413, 536
MalI	GATC	2 cut(s)	132, 219
MboI	GATC	2 cut(s)	130, 217
MboII	GAAGA	4 cut(s)	82, 493, 542, 779
MhlI	GDGCHC	4 cut(s)	107, 125, 162, 485
MluCI	AATT	6 cut(s)	191, 408, 425, 454, 471, 495
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	5 cut(s)	7, 274, 454, 711, 798
MseI	TTAA	5 cut(s)	33, 180, 345, 429, 465
MslI	CAYNNNNRTG	2 cut(s)	168, 569
MspA1I	CMGCKG	2 cut(s)	223, 584
MspR9I	CCNGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	157, 320, 581
NdeII	GATC	2 cut(s)	130, 217
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	5 cut(s)	173, 245, 574, 828, 841
NlaIV	GGNNCC	2 cut(s)	233, 234
NsbI	TGCGCA	1 cut(s)	315
NspI	RCATGY	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	245
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	4 cut(s)	37, 644, 707, 856
PkrI	GCNGC	2 cut(s)	318, 835
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	2 cut(s)	584, 884
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	233, 234
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PvuII	CAGCTG	2 cut(s)	223, 584
RsaI	GTAC	4 cut(s)	27, 56, 523, 534
RsaNI	GTAC	4 cut(s)	26, 55, 522, 533
RseI	CAYNNNNRTG	2 cut(s)	168, 569
SaqAI	TTAA	5 cut(s)	33, 180, 345, 429, 465
SatI	GCNGC	2 cut(s)	317, 834
Sau3AI	GATC	2 cut(s)	130, 217
Sau96I	GGNCC	1 cut(s)	232
ScaI	AGTACT	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	4 cut(s)	107, 125, 162, 485
SfaNI	GCATC	4 cut(s)	125, 283, 666, 823
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	168, 569
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	6 cut(s)	191, 408, 425, 454, 471, 495
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	5 cut(s)	45, 141, 320, 413, 536
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	5 cut(s)	25, 280, 526, 811, 845
TaqI	TCGA	1 cut(s)	553
TaqII	GACCGA	1 cut(s)	926
TasI	AATT	6 cut(s)	191, 408, 425, 454, 471, 495
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	4 cut(s)	37, 644, 707, 856
Tru1I	TTAA	5 cut(s)	33, 180, 345, 429, 465
Tru9I	TTAA	5 cut(s)	33, 180, 345, 429, 465
TscAI	CASTG	5 cut(s)	265, 745, 769, 816, 850
TseI	GCWGC	2 cut(s)	316, 833
TspDTI	ATGAA	3 cut(s)	414, 483, 854
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	5 cut(s)	265, 745, 769, 816, 850
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	425, 495
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	1 cut(s)	245
XspI	CTAG	5 cut(s)	45, 141, 320, 413, 536
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.