Ubiquitin system component Cue protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g41870 |
| rosa_chinensis | RchiOBHm_Chr5g0074891 RchiOBHm_Chr5g0075061 |
| rosa_laevigata | RLG00000036524 RLG00000036525 |
| rosa_multiflora | Rmu_co8142168.1_g000001 Rmu_sc0006984.1_g000018 Rmu_sc0006984.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00006560 Rroxscaffold_1G00006900 |
| rosa_rugosa | Rorug05G0435800 |
| rosa_samantha | Rh5AG493300 Rh5BG514700 Rh5BG514800 Rh5CG538300 Rh5CG538400 Rh5DG527200 |
| rosa_wichuraiana | Rw5G045740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 212, 348 |
| AcsI | RAATTY | 1 cut(s) | 436 |
| AcuI | CTGAAG | 2 cut(s) | 392, 467 |
| AfaI | GTAC | 1 cut(s) | 160 |
| AfeI | AGCGCT | 1 cut(s) | 411 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 155 |
| AgsI | TTSAA | 4 cut(s) | 176, 247, 436, 496 |
| AluBI | AGCT | 2 cut(s) | 79, 455 |
| AluI | AGCT | 2 cut(s) | 79, 455 |
| Alw21I | GWGCWC | 1 cut(s) | 300 |
| Alw26I | GTCTC | 1 cut(s) | 410 |
| Aor51HI | AGCGCT | 1 cut(s) | 411 |
| ApeKI | GCWGC | 1 cut(s) | 233 |
| ApoI | RAATTY | 1 cut(s) | 436 |
| AspLEI | GCGC | 1 cut(s) | 412 |
| AsuHPI | GGTGA | 2 cut(s) | 74, 112 |
| Bbv12I | GWGCWC | 1 cut(s) | 300 |
| BbvI | GCAGC | 1 cut(s) | 220 |
| BccI | CCATC | 1 cut(s) | 149 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 35, 69 |
| BcoDI | GTCTC | 1 cut(s) | 410 |
| BfaI | CTAG | 2 cut(s) | 207, 222 |
| BfoI | RGCGCY | 1 cut(s) | 413 |
| BisI | GCNGC | 1 cut(s) | 234 |
| BlsI | GCNGC | 1 cut(s) | 235 |
| BmsI | GCATC | 4 cut(s) | 43, 208, 376, 451 |
| Bpu10I | CCTNAGC | 1 cut(s) | 71 |
| BpuEI | CTTGAG | 2 cut(s) | 284, 434 |
| Bsa29I | ATCGAT | 1 cut(s) | 263 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 155 |
| Bse3DI | GCAATG | 2 cut(s) | 26, 467 |
| BseCI | ATCGAT | 1 cut(s) | 263 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BseMI | GCAATG | 2 cut(s) | 26, 467 |
| BseMII | CTCAG | 1 cut(s) | 62 |
| BseXI | GCAGC | 1 cut(s) | 220 |
| Bsh1285I | CGRYCG | 1 cut(s) | 267 |
| BshVI | ATCGAT | 1 cut(s) | 263 |
| BsiEI | CGRYCG | 1 cut(s) | 267 |
| BsiHKAI | GWGCWC | 1 cut(s) | 300 |
| BslFI | GGGAC | 1 cut(s) | 464 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BsmAI | GTCTC | 1 cut(s) | 410 |
| BsmFI | GGGAC | 1 cut(s) | 464 |
| Bsp1286I | GDGCHC | 1 cut(s) | 300 |
| Bsp143I | GATC | 2 cut(s) | 133, 264 |
| BspACI | CCGC | 2 cut(s) | 212, 348 |
| BspCNI | CTCAG | 1 cut(s) | 63 |
| BspDI | ATCGAT | 1 cut(s) | 263 |
| BsrDI | GCAATG | 2 cut(s) | 26, 467 |
| BssMI | GATC | 2 cut(s) | 133, 264 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 233, 457 |
| BstC8I | GCNNGC | 3 cut(s) | 77, 306, 453 |
| BstDEI | CTNAG | 1 cut(s) | 71 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstH2I | RGCGCY | 1 cut(s) | 413 |
| BstHHI | GCGC | 1 cut(s) | 412 |
| BstKTI | GATC | 2 cut(s) | 136, 267 |
| BstMAI | GTCTC | 1 cut(s) | 410 |
| BstMBI | GATC | 2 cut(s) | 133, 264 |
| BstMCI | CGRYCG | 1 cut(s) | 267 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 218, 233, 448, 457 |
| BstV1I | GCAGC | 1 cut(s) | 220 |
| Bsu15I | ATCGAT | 1 cut(s) | 263 |
| BsuTUI | ATCGAT | 1 cut(s) | 263 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| Cac8I | GCNNGC | 3 cut(s) | 77, 306, 453 |
| CfoI | GCGC | 1 cut(s) | 412 |
| ClaI | ATCGAT | 1 cut(s) | 263 |
| Csp6I | GTAC | 1 cut(s) | 159 |
| CviJI | RGCY | 8 cut(s) | 69, 75, 79, 233, 354, 386, 432, 455 |
| CviKI_1 | RGCY | 8 cut(s) | 69, 75, 79, 233, 354, 386, 432, 455 |
| CviQI | GTAC | 1 cut(s) | 159 |
| DdeI | CTNAG | 1 cut(s) | 71 |
| DpnI | GATC | 2 cut(s) | 135, 266 |
| DpnII | GATC | 2 cut(s) | 133, 264 |
| EciI | GGCGGA | 1 cut(s) | 363 |
| Eco47III | AGCGCT | 1 cut(s) | 411 |
| Eco57I | CTGAAG | 2 cut(s) | 392, 467 |
| FaiI | YATR | 2 cut(s) | 293, 429 |
| FaqI | GGGAC | 1 cut(s) | 464 |
| Fnu4HI | GCNGC | 1 cut(s) | 234 |
| FokI | GGATG | 1 cut(s) | 230 |
| Fsp4HI | GCNGC | 1 cut(s) | 234 |
| FspBI | CTAG | 2 cut(s) | 207, 222 |
| GlaI | GCGC | 1 cut(s) | 411 |
| GluI | GCNGC | 1 cut(s) | 234 |
| HaeII | RGCGCY | 1 cut(s) | 413 |
| HhaI | GCGC | 1 cut(s) | 412 |
| Hin6I | GCGC | 1 cut(s) | 410 |
| HinP1I | GCGC | 1 cut(s) | 410 |
| HinfI | GANTC | 2 cut(s) | 13, 35 |
| HphI | GGTGA | 2 cut(s) | 74, 112 |
| Hpy188I | TCNGA | 5 cut(s) | 12, 138, 188, 372, 447 |
| Hpy188III | TCNNGA | 3 cut(s) | 17, 149, 500 |
| Hpy99I | CGWCG | 1 cut(s) | 155 |
| HpyAV | CCTTC | 3 cut(s) | 241, 277, 367 |
| HpyCH4V | TGCA | 6 cut(s) | 31, 236, 272, 442, 460, 465 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 218, 233, 448, 457 |
| HpyF3I | CTNAG | 1 cut(s) | 71 |
| HspAI | GCGC | 1 cut(s) | 410 |
| Kzo9I | GATC | 2 cut(s) | 133, 264 |
| LpnPI | CCDG | 6 cut(s) | 52, 83, 89, 93, 471, 495 |
| Lsp1109I | GCAGC | 1 cut(s) | 220 |
| LweI | GCATC | 4 cut(s) | 43, 208, 376, 451 |
| MaeI | CTAG | 2 cut(s) | 207, 222 |
| MaeIII | GTNAC | 1 cut(s) | 100 |
| MalI | GATC | 2 cut(s) | 135, 266 |
| MboI | GATC | 2 cut(s) | 133, 264 |
| MhlI | GDGCHC | 1 cut(s) | 300 |
| MluCI | AATT | 3 cut(s) | 176, 424, 436 |
| MlyI | GAGTC | 1 cut(s) | 44 |
| MmeI | TCCRAC | 2 cut(s) | 321, 495 |
| MnlI | CCTC | 3 cut(s) | 208, 337, 357 |
| MseI | TTAA | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 218, 233, 448, 457 |
| NdeII | GATC | 2 cut(s) | 133, 264 |
| NmeAIII | GCCGAG | 1 cut(s) | 380 |
| NmuCI | GTSAC | 1 cut(s) | 100 |
| PfeI | GAWTC | 1 cut(s) | 13 |
| PkrI | GCNGC | 1 cut(s) | 235 |
| Ple19I | CGATCG | 1 cut(s) | 267 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| PvuI | CGATCG | 1 cut(s) | 267 |
| RsaI | GTAC | 1 cut(s) | 160 |
| RsaNI | GTAC | 1 cut(s) | 159 |
| SaqAI | TTAA | 1 cut(s) | 63 |
| SatI | GCNGC | 1 cut(s) | 234 |
| Sau3AI | GATC | 2 cut(s) | 133, 264 |
| SchI | GAGTC | 1 cut(s) | 44 |
| SduI | GDGCHC | 1 cut(s) | 300 |
| SetI | ASST | 3 cut(s) | 81, 87, 457 |
| SfaNI | GCATC | 4 cut(s) | 43, 208, 376, 451 |
| SmlI | CTYRAG | 2 cut(s) | 299, 413 |
| SmoI | CTYRAG | 2 cut(s) | 299, 413 |
| Sse9I | AATT | 3 cut(s) | 176, 424, 436 |
| SsiI | CCGC | 2 cut(s) | 212, 348 |
| SspMI | CTAG | 2 cut(s) | 207, 222 |
| TaqI | TCGA | 1 cut(s) | 263 |
| TasI | AATT | 3 cut(s) | 176, 424, 436 |
| TfiI | GAWTC | 1 cut(s) | 13 |
| Tru1I | TTAA | 1 cut(s) | 63 |
| Tru9I | TTAA | 1 cut(s) | 63 |
| TseFI | GTSAC | 1 cut(s) | 100 |
| TseI | GCWGC | 1 cut(s) | 233 |
| Tsp45I | GTSAC | 1 cut(s) | 100 |
| TspGWI | ACGGA | 1 cut(s) | 179 |
| XapI | RAATTY | 1 cut(s) | 436 |
| XspI | CTAG | 2 cut(s) | 207, 222 |