Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013650

Physical Location & Seq

Genomic Coordinates Forward (+)

79742000 .. 79747897

Gene Structure 5898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGACCCCCAGGTTCTCGAGAGATCACTACAAGAATCCCATTACGATTTGGATGCCACAGTCAAGAGCCTCAACGACCTTTCCGAAAAACAGAAAGATTTTTCAAGTTCTGCTGAAAAAGTAGAACAGCTTCGTCTTGATGGCCCGGGATGGATCGACTTGGCTATCAAAGAGATGGCAAGTGCTACTAGTGTCGATGATGCTAGGGCACGAGCGGCGAAAGTGCTAGAGGGTTTCGAGAAATCGACCTGTGCACGTGAGAATATGATGCTGAAAAAGAAAAAGGACGCACTGCTAGAAGAGAACATCTTTCTCAAACGTTTTGTGCATGTGCAGAATGAGCGGTATAAAGAGCATGAGGGGAGAGACCAGGAATTGAAGAACCTGAAGGACTTGGTGGATCAACAAAAGGAGCAGTTGCGGAAGCTAGAAATTTACAAAGCGCTTGAGGTTAACAACTATGGCTTGAATTTGCATCTGAAGCAAGCTCTGCAATGCAACTCCAATTTTGTCCCTGCTGGAAGTTTCAATCCTGATGTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

181

Amino Acids

20.79

Weight (kDa)

5.67

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41870
rosa_chinensis	RchiOBHm_Chr5g0074891 RchiOBHm_Chr5g0075061
rosa_laevigata	RLG00000036524 RLG00000036525
rosa_multiflora	Rmu_co8142168.1_g000001 Rmu_sc0006984.1_g000018 Rmu_sc0006984.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006560 Rroxscaffold_1G00006900
rosa_rugosa	Rorug05G0435800
rosa_samantha	Rh5AG493300 Rh5BG514700 Rh5BG514800 Rh5CG538300 Rh5CG538400 Rh5DG527200
rosa_wichuraiana	Rw5G045740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	215, 343
AciI	CCGC	3 cut(s)	215, 343, 421
AclI	AACGTT	1 cut(s)	319
AclWI	GGATC	2 cut(s)	161, 408
AcsI	RAATTY	2 cut(s)	432, 469
AcuI	CTGAAG	2 cut(s)	407, 500
AcvI	CACGTG	1 cut(s)	257
AfeI	AGCGCT	1 cut(s)	444
AgsI	TTSAA	4 cut(s)	105, 379, 469, 529
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	9, 369
AluBI	AGCT	3 cut(s)	130, 427, 488
AluI	AGCT	3 cut(s)	130, 427, 488
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	360
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	161, 408
Ama87I	CYCGRG	2 cut(s)	17, 145
Aor51HI	AGCGCT	1 cut(s)	444
AoxI	GGCC	1 cut(s)	142
ApaLI	GTGCAC	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	432, 469
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	2 cut(s)	4, 143
AsuC2I	CCSGG	2 cut(s)	146, 147
AvaI	CYCGRG	2 cut(s)	17, 145
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	211, 256
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BauI	CACGAG	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	256
BccI	CCATC	3 cut(s)	134, 144, 169
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	2 cut(s)	11, 371
BcnI	CCSGG	2 cut(s)	146, 147
BcoDI	GTCTC	1 cut(s)	360
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	5 cut(s)	189, 204, 227, 296, 428
BfoI	RGCGCY	1 cut(s)	446
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	4 cut(s)	11, 146, 147, 371
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	17, 145
BmgT120I	GGNCC	2 cut(s)	4, 143
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	11, 146, 147, 371
BmsI	GCATC	4 cut(s)	43, 190, 258, 484
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	2 cut(s)	146, 147
BsaAI	YACGTR	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	9, 145
Bse3DI	GCAATG	1 cut(s)	500
BseBI	CCWGG	2 cut(s)	11, 371
BseDI	CCNNGG	2 cut(s)	9, 145
BseGI	GGATG	2 cut(s)	58, 155
BseMI	GCAATG	1 cut(s)	500
BseSI	GKGCMC	2 cut(s)	211, 256
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	17, 145
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	144
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	2 cut(s)	17, 145
Bsp1286I	GDGCHC	2 cut(s)	211, 256
Bsp143I	GATC	3 cut(s)	23, 153, 400
BspACI	CCGC	3 cut(s)	215, 343, 421
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	161, 408
BspTNI	GGTCTC	1 cut(s)	360
BsrBI	CCGCTC	2 cut(s)	215, 343
BsrDI	GCAATG	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	9, 145
BssMI	GATC	3 cut(s)	23, 153, 400
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	11, 371
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	58, 155
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	3 cut(s)	26, 156, 403
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	3 cut(s)	23, 153, 400
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 340, 481, 490
BstNI	CCWGG	2 cut(s)	11, 371
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	4 cut(s)	9, 144, 145, 369
BstSLI	GKGCMC	2 cut(s)	211, 256
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	58, 155
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	486
CfoI	GCGC	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	4, 143
Cfr9I	CCCGGG	1 cut(s)	145
CseI	GACGC	1 cut(s)	296
CviAII	CATG	2 cut(s)	329, 356
CviJI	RGCY	7 cut(s)	69, 130, 144, 164, 427, 465, 488
CviKI_1	RGCY	7 cut(s)	69, 130, 144, 164, 427, 465, 488
DpnI	GATC	3 cut(s)	25, 155, 402
DpnII	GATC	3 cut(s)	23, 153, 400
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	444
Eco57I	CTGAAG	2 cut(s)	407, 500
Eco72I	CACGTG	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	17, 145
EcoRII	CCWGG	2 cut(s)	9, 369
FaeI	CATG	2 cut(s)	332, 359
FaiI	YATR	5 cut(s)	266, 330, 348, 357, 462
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	2 cut(s)	328, 355
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	65, 162
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	5 cut(s)	189, 204, 227, 296, 428
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	2 cut(s)	332, 359
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	1 cut(s)	35
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	254, 454
Hpy188I	TCNGA	2 cut(s)	85, 480
Hpy188III	TCNNGA	6 cut(s)	17, 19, 64, 137, 238, 533
Hpy8I	GTNNAC	2 cut(s)	254, 454
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	256, 319
HpyCH4V	TGCA	6 cut(s)	254, 328, 334, 475, 493, 498
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 340, 481, 490
HpySE526I	ACGT	2 cut(s)	256, 319
Hsp92II	CATG	2 cut(s)	332, 359
HspAI	GCGC	1 cut(s)	443
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	23, 153, 400
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	23, 159, 262, 356, 383, 398, 504, 528
LweI	GCATC	4 cut(s)	43, 190, 258, 484
MaeI	CTAG	5 cut(s)	189, 204, 227, 296, 428
MaeII	ACGT	2 cut(s)	256, 319
MalI	GATC	3 cut(s)	25, 155, 402
MbiI	CCGCTC	2 cut(s)	215, 343
MboI	GATC	3 cut(s)	23, 153, 400
MboII	GAAGA	2 cut(s)	311, 391
MhlI	GDGCHC	2 cut(s)	211, 256
MluCI	AATT	4 cut(s)	374, 432, 469, 505
MnlI	CCTC	4 cut(s)	80, 223, 352, 442
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	1 cut(s)	453
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	4 cut(s)	11, 146, 147, 371
MvaI	CCWGG	2 cut(s)	11, 371
MwoI	GCNNNNNNNGC	4 cut(s)	215, 340, 481, 490
NciI	CCSGG	2 cut(s)	146, 147
NdeII	GATC	3 cut(s)	23, 153, 400
NlaIII	CATG	2 cut(s)	332, 359
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	257
Psp1406I	AACGTT	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	9, 369
PspCI	CACGTG	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	9, 369
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 143
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	23, 153, 400
Sau96I	GGNCC	2 cut(s)	4, 143
ScrFI	CCNGG	4 cut(s)	11, 146, 147, 371
SduI	GDGCHC	2 cut(s)	211, 256
SfaNI	GCATC	4 cut(s)	43, 190, 258, 484
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	17
SmaI	CCCGGG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	17, 446
SmoI	CTYRAG	2 cut(s)	17, 446
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	4 cut(s)	374, 432, 469, 505
SsiI	CCGC	3 cut(s)	215, 343, 421
SspMI	CTAG	5 cut(s)	189, 204, 227, 296, 428
StyD4I	CCNGG	4 cut(s)	9, 144, 145, 369
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	259, 322
TaqI	TCGA	5 cut(s)	18, 156, 195, 237, 245
TasI	AATT	4 cut(s)	374, 432, 469, 505
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	297
TspMI	CCCGGG	1 cut(s)	145
TspRI	CASTG	1 cut(s)	297
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	432, 469
XceI	RCATGY	1 cut(s)	332
XhoI	CTCGAG	1 cut(s)	17
XmaI	CCCGGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	5 cut(s)	189, 204, 227, 296, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.