Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013650

Physical Location & Seq

Genomic Coordinates Forward (+)

81459481 .. 81465495

Gene Structure 6015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG527200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATGCTGAAAAAGCAAAAGGACGCACTGCTAGAAGAGAACGTCTTTCTCAAACGTTTTGTGCATGTGCAGAATGAGCGGTATAAAGAGCATGAGGGGAGAGACCAGGAATTGAAGAACCTGAAGGACTTGGTGGATCAACAAAAGGAGCAGTTGCGGAAGCTTGAAATTTACAATGTGGAGGATGCTAGGGCACGCGCTGCAAAAGTGTTAAAGGGTTTCGAGAAATCGATCGGTGCAAGCTTTGAAAAGGAGAATATGGTGCTCAAGCGTGCTGTGTGTGTGCTACTTGAACGGCAGAAAGAGTTAGAGGGTCGAAGCCGAGAATTGAAGCATATGAAGGAGTTGGTGGCTCAACAGCAAGAGCAGTTGAGAGCGCTTGAGGTTAACAACTATGGCTTGAATTTGCATCTGAAGCAAGCTCTGCAATGCAAGTCCAATTTTGTCCCTGCTGGAAGTTTCAATCCTGATGTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

159

Amino Acids

18.65

Weight (kDa)

9.16

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41870
rosa_chinensis	RchiOBHm_Chr5g0074891 RchiOBHm_Chr5g0075061
rosa_laevigata	RLG00000036524 RLG00000036525
rosa_multiflora	Rmu_co8142168.1_g000001 Rmu_sc0006984.1_g000018 Rmu_sc0006984.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006560 Rroxscaffold_1G00006900
rosa_rugosa	Rorug05G0435800
rosa_samantha	Rh5AG493300 Rh5BG514700 Rh5BG514800 Rh5CG538300 Rh5CG538400 Rh5DG527200
rosa_wichuraiana	Rw5G045740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	79, 157
AclI	AACGTT	1 cut(s)	55
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	168, 403
AcuI	CTGAAG	2 cut(s)	143, 434
AfeI	AGCGCT	1 cut(s)	378
AgsI	TTSAA	7 cut(s)	115, 167, 248, 293, 331, 403, 463
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	3 cut(s)	163, 243, 422
AluI	AGCT	3 cut(s)	163, 243, 422
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	144
Aor51HI	AGCGCT	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	168, 403
AspLEI	GCGC	2 cut(s)	200, 379
BaeGI	GKGCMC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	32, 189
BfoI	RGCGCY	1 cut(s)	380
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	175, 418
BpuEI	CTTGAG	2 cut(s)	251, 401
Bsa29I	ATCGAT	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	107
BseCI	ATCGAT	1 cut(s)	230
BseGI	GGATG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	196, 267
Bsp143I	GATC	2 cut(s)	136, 231
BspACI	CCGC	2 cut(s)	79, 157
BspDI	ATCGAT	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	198
BspPI	GGATC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	434
BssMI	GATC	2 cut(s)	136, 231
Bst2UI	CCWGG	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	2 cut(s)	200, 424
BstC8I	GCNNGC	4 cut(s)	196, 241, 273, 420
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	200, 379
BstKTI	GATC	2 cut(s)	139, 234
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	2 cut(s)	136, 231
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 76, 200, 415, 424
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	230
BsuTUI	ATCGAT	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	4 cut(s)	196, 241, 273, 420
CfoI	GCGC	2 cut(s)	200, 379
ClaI	ATCGAT	1 cut(s)	230
CseI	GACGC	1 cut(s)	32
CviAII	CATG	2 cut(s)	65, 92
CviJI	RGCY	6 cut(s)	163, 243, 321, 353, 399, 422
CviKI_1	RGCY	6 cut(s)	163, 243, 321, 353, 399, 422
DpnI	GATC	2 cut(s)	138, 233
DpnII	GATC	2 cut(s)	136, 231
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	143, 434
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	68, 95
FaiI	YATR	7 cut(s)	66, 84, 93, 260, 336, 338, 396
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	64, 91
FauNDI	CATATG	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	32, 189
GlaI	GCGC	2 cut(s)	199, 378
GluI	GCNGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	380
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	200, 379
Hin1II	CATG	2 cut(s)	68, 95
Hin6I	GCGC	2 cut(s)	198, 377
HinP1I	GCGC	2 cut(s)	198, 377
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	2 cut(s)	161, 241
HpaI	GTTAAC	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	2 cut(s)	223, 467
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	118, 334
HpyCH4IV	ACGT	2 cut(s)	42, 55
HpyCH4V	TGCA	7 cut(s)	64, 70, 203, 239, 409, 427, 432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 76, 200, 415, 424
HpySE526I	ACGT	2 cut(s)	42, 55
Hsp92II	CATG	2 cut(s)	68, 95
HspAI	GCGC	2 cut(s)	198, 377
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	136, 231
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	5 cut(s)	92, 119, 134, 438, 462
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	175, 418
MaeI	CTAG	2 cut(s)	32, 189
MaeII	ACGT	2 cut(s)	42, 55
MalI	GATC	2 cut(s)	138, 233
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	136, 231
MboII	GAAGA	2 cut(s)	47, 127
MhlI	GDGCHC	2 cut(s)	196, 267
MluCI	AATT	5 cut(s)	110, 168, 326, 403, 439
MnlI	CCTC	4 cut(s)	88, 175, 304, 376
MseI	TTAA	2 cut(s)	212, 387
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	5 cut(s)	13, 76, 200, 415, 424
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	2 cut(s)	136, 231
NlaIII	CATG	2 cut(s)	68, 95
NmeAIII	GCCGAG	1 cut(s)	347
NspI	RCATGY	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	202
Ple19I	CGATCG	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PvuI	CGATCG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	212, 387
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	136, 231
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	196, 267
SetI	ASST	7 cut(s)	45, 58, 123, 165, 245, 387, 424
SfaNI	GCATC	2 cut(s)	175, 418
SmlI	CTYRAG	2 cut(s)	266, 380
SmoI	CTYRAG	2 cut(s)	266, 380
Sse9I	AATT	5 cut(s)	110, 168, 326, 403, 439
SsiI	CCGC	2 cut(s)	79, 157
SspMI	CTAG	2 cut(s)	32, 189
StyD4I	CCNGG	1 cut(s)	105
TaiI	ACGT	2 cut(s)	45, 58
TaqI	TCGA	3 cut(s)	222, 230, 316
TasI	AATT	5 cut(s)	110, 168, 326, 403, 439
Tru1I	TTAA	2 cut(s)	212, 387
Tru9I	TTAA	2 cut(s)	212, 387
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	33
XapI	RAATTY	2 cut(s)	168, 403
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	2 cut(s)	32, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.