Rroxscaffold_1G00006900

CUE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013650
Physical Location & Seq
Forward (+)
8890157 .. 8890564
408 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00006900.1

Sequence Viewer

Length: 408 bp
ATGTCCGCAGCGGTAGTACCGTGTGGAAGCAAAGGTCCTTCTTTGAAGATGTTCCTCCATCTCCATCGCCACCTTATCTCTCCAAGAGACTTCGCTGCTCTTCTTCTTTTATTTCTTCGCCGACGAGTCAACCATTCAACACTTCGGGTTCCATACGCACTCGCTCAACTTCGTTTGCTCTTCCCCCACATGGACCCCCGTGTTCTCGAGATATCACCGCAAGAATCCAGCTACCATTTGGATGCCACAATCAAGAACCTCAACGACCTTGCCAAAGAAGAGAAAGATTTTTCAAGTTCTGCTAAAAAAGTAGAACAGCTTCCGTTGATGGCCCGGGATGGATTGAATTGGCTTTCGGAGAGATGGCAAGTGCTACTAGTGTCGATAATGCTAGGGCACGAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

135

Amino Acids

15.47

Weight (kDa)

9.72

Isoelectric Point (pI)

60.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 403
AciI CCGC 4 cut(s) 6, 11, 218, 403
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 4 cut(s) 46, 138, 294, 346
AhlI ACTAGT 1 cut(s) 376
AluBI AGCT 2 cut(s) 231, 319
AluI AGCT 2 cut(s) 231, 319
Alw26I GTCTC 1 cut(s) 81
Ama87I CYCGRG 2 cut(s) 206, 333
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 2 cut(s) 8, 95
Asp700I GAANNNNTTC 2 cut(s) 50, 318
AspS9I GGNCC 3 cut(s) 35, 193, 331
AsuC2I CCSGG 2 cut(s) 334, 335
AsuHPI GGTGA 1 cut(s) 207
AvaI CYCGRG 2 cut(s) 206, 333
AvaII GGWCC 2 cut(s) 35, 193
BaeGI GKGCMC 1 cut(s) 399
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BauI CACGAG 1 cut(s) 398
BbvI GCAGC 2 cut(s) 20, 82
BccI CCATC 5 cut(s) 66, 72, 322, 332, 357
BcnI CCSGG 2 cut(s) 334, 335
BcoDI GTCTC 1 cut(s) 81
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 2 cut(s) 377, 392
BisI GCNGC 2 cut(s) 9, 96
BlsI GCNGC 2 cut(s) 10, 97
Bme1390I CCNGG 2 cut(s) 334, 335
Bme18I GGWCC 2 cut(s) 35, 193
BmeT110I CYCGRG 2 cut(s) 206, 333
BmgT120I GGNCC 3 cut(s) 35, 193, 331
BmiI GGNNCC 2 cut(s) 150, 195
BmrFI CCNGG 2 cut(s) 334, 335
BmsI GCATC 1 cut(s) 232
BpuMI CCSGG 2 cut(s) 334, 335
BsaJI CCNNGG 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 247, 343
BseLI CCNNNNNNNGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 2 cut(s) 20, 82
BshFI GGCC 1 cut(s) 332
BsiHKCI CYCGRG 2 cut(s) 206, 333
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 332
BsoBI CYCGRG 2 cut(s) 206, 333
Bsp1286I GDGCHC 1 cut(s) 399
BspACI CCGC 4 cut(s) 6, 11, 218, 403
BspANI GGCC 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 150, 195
BspQI GCTCTTC 2 cut(s) 105, 185
BsrBI CCGCTC 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 333
BssSI CACGAG 1 cut(s) 398
Bst2BI CACGAG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 3 cut(s) 105, 185, 273
BstF5I GGATG 2 cut(s) 247, 343
BstMAI GTCTC 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 332, 333
BstSLI GKGCMC 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 20, 82
BsuRI GGCC 1 cut(s) 332
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 247, 343
Cfr13I GGNCC 3 cut(s) 35, 193, 331
Cfr9I CCCGGG 1 cut(s) 333
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 190
CviJI RGCY 4 cut(s) 231, 319, 332, 352
CviKI_1 RGCY 4 cut(s) 231, 319, 332, 352
CviQI GTAC 1 cut(s) 17
Eam1104I CTCTTC 3 cut(s) 105, 185, 273
EarI CTCTTC 3 cut(s) 105, 185, 273
Eco32I GATATC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 35, 193
Eco88I CYCGRG 2 cut(s) 206, 333
EcoO109I RGGNCCY 1 cut(s) 35
EcoRV GATATC 1 cut(s) 213
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 154, 191
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 9, 96
FokI GGATG 2 cut(s) 254, 350
Fsp4HI GCNGC 2 cut(s) 9, 96
FspBI CTAG 2 cut(s) 377, 392
GluI GCNGC 2 cut(s) 9, 96
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 334
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 126, 224
HpaII CCGG 1 cut(s) 334
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 206, 208, 253
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 193
LguI GCTCTTC 2 cut(s) 105, 185
LpnPI CCDG 2 cut(s) 241, 347
Lsp1109I GCAGC 2 cut(s) 20, 82
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 377, 392
MbiI CCGCTC 1 cut(s) 403
MboII GAAGA 6 cut(s) 58, 92, 95, 107, 172, 290
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 2 cut(s) 65, 269
MroXI GAANNNNTTC 2 cut(s) 50, 318
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 2 cut(s) 334, 335
NciI CCSGG 2 cut(s) 334, 335
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 150, 195
PaeR7I CTCGAG 1 cut(s) 206
PciSI GCTCTTC 2 cut(s) 105, 185
PdmI GAANNNNTTC 2 cut(s) 50, 318
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 10, 97
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 150, 195
PspPI GGNCC 3 cut(s) 35, 193, 331
PspPPI RGGWCCY 1 cut(s) 35
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 240
SapI GCTCTTC 2 cut(s) 105, 185
SatI GCNGC 2 cut(s) 9, 96
Sau96I GGNCC 3 cut(s) 35, 193, 331
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 334, 335
SduI GDGCHC 1 cut(s) 399
SetI ASST 6 cut(s) 37, 75, 233, 261, 270, 321
SfaNI GCATC 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 2 cut(s) 35, 193
SlaI CTCGAG 1 cut(s) 206
SmaI CCCGGG 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 1 cut(s) 346
SsiI CCGC 4 cut(s) 6, 11, 218, 403
SspMI CTAG 2 cut(s) 377, 392
StyD4I CCNGG 2 cut(s) 332, 333
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 207, 383
TasI AATT 1 cut(s) 346
TfiI GAWTC 1 cut(s) 224
TseI GCWGC 2 cut(s) 8, 95
TspGWI ACGGA 1 cut(s) 312
TspMI CCCGGG 1 cut(s) 333
VpaK11BI GGWCC 2 cut(s) 35, 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 333
XmnI GAANNNNTTC 2 cut(s) 50, 318
XspI CTAG 2 cut(s) 377, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.