Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8142168.1

Orthogroup ID

OG0013650

Physical Location & Seq

Genomic Coordinates Forward (+)

23 .. 535

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8142168.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggatctccagattcttgataaagcattgcaagagtcctgctacgatattgacgccaccatcaagagcctgagcgagcttcacctgacggagaatagggttgcttctggttctgctgaaaaagtaccacaagatcagaaacccattcctgaagatggtactgcggattgggttgaattggttatcggagaattgataacttgtactagtgtggaggatgctagggcacgcgctgcaaaagtgttaaagggtttcgagaaatcgatcggtgcaagctttgaaaaggagaatatggtgctcaagcgagctgtgtgtgtgctacttgaacggcagaaagagttagagggtcgaagccgagaattgaagcatatgaaggagttggtggctcaacagcaagagaagttgagagcgcttgaggttaacaactatggcttgaatttgcatctgaagcaagctctgcaatgcaactccaattttgtccctgctggaagtttcaatcctgatgtcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

170

Amino Acids

18.98

Weight (kDa)

5.33

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41870
rosa_chinensis	RchiOBHm_Chr5g0074891 RchiOBHm_Chr5g0075061
rosa_laevigata	RLG00000036524 RLG00000036525
rosa_multiflora	Rmu_co8142168.1_g000001 Rmu_sc0006984.1_g000018 Rmu_sc0006984.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006560 Rroxscaffold_1G00006900
rosa_rugosa	Rorug05G0435800
rosa_samantha	Rh5AG493300 Rh5BG514700 Rh5BG514800 Rh5CG538300 Rh5CG538400 Rh5DG527200
rosa_wichuraiana	Rw5G045740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	2 cut(s)	171, 467
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	3 cut(s)	126, 160, 205
AfeI	AGCGCT	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	6 cut(s)	176, 281, 326, 364, 436, 496
AhlI	ACTAGT	1 cut(s)	206
AluBI	AGCT	4 cut(s)	79, 276, 308, 455
AluI	AGCT	4 cut(s)	79, 276, 308, 455
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	436
AspLEI	GCGC	2 cut(s)	233, 412
AsuHPI	GGTGA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	68, 149
BceAI	ACGGC	1 cut(s)	344
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	2 cut(s)	207, 222
BfoI	RGCGCY	1 cut(s)	413
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmsI	GCATC	2 cut(s)	208, 451
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	284, 434
Bsa29I	ATCGAT	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse3DI	GCAATG	2 cut(s)	26, 467
BseCI	ATCGAT	1 cut(s)	263
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	2 cut(s)	26, 467
BseMII	CTCAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	267
BshVI	ATCGAT	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	229, 300
Bsp143I	GATC	3 cut(s)	4, 133, 264
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	63
BspDI	ATCGAT	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	26, 467
BssMI	GATC	3 cut(s)	4, 133, 264
BssNI	GRCGYC	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	2 cut(s)	233, 457
BstC8I	GCNNGC	5 cut(s)	77, 229, 274, 306, 453
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	2 cut(s)	233, 412
BstKTI	GATC	3 cut(s)	7, 136, 267
BstMBI	GATC	3 cut(s)	4, 133, 264
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 448, 457
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	223
Cac8I	GCNNGC	5 cut(s)	77, 229, 274, 306, 453
CfoI	GCGC	2 cut(s)	233, 412
ClaI	ATCGAT	1 cut(s)	263
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	125, 159, 204
CviJI	RGCY	8 cut(s)	69, 79, 276, 308, 354, 386, 432, 455
CviKI_1	RGCY	8 cut(s)	69, 79, 276, 308, 354, 386, 432, 455
CviQI	GTAC	3 cut(s)	125, 159, 204
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	6, 135, 266
DpnII	GATC	3 cut(s)	4, 133, 264
Eco47III	AGCGCT	1 cut(s)	411
Eco57I	CTGAAG	2 cut(s)	171, 467
FaiI	YATR	4 cut(s)	293, 369, 371, 429
FaqI	GGGAC	1 cut(s)	464
FauNDI	CATATG	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	207, 222
GlaI	GCGC	2 cut(s)	232, 411
GluI	GCNGC	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	413
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	2 cut(s)	233, 412
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	2 cut(s)	231, 410
HinP1I	GCGC	2 cut(s)	231, 410
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	2 cut(s)	13, 35
HpaI	GTTAAC	1 cut(s)	421
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	3 cut(s)	138, 188, 447
Hpy188III	TCNNGA	6 cut(s)	10, 17, 64, 149, 256, 500
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	367
HpyCH4V	TGCA	6 cut(s)	31, 236, 272, 442, 460, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 448, 457
HpyF3I	CTNAG	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	2 cut(s)	231, 410
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	4, 133, 264
LpnPI	CCDG	8 cut(s)	23, 52, 83, 93, 98, 162, 471, 495
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	2 cut(s)	208, 451
MaeI	CTAG	2 cut(s)	207, 222
MalI	GATC	3 cut(s)	6, 135, 266
MboI	GATC	3 cut(s)	4, 133, 264
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	229, 300
MluCI	AATT	5 cut(s)	176, 191, 359, 436, 472
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	208, 337, 409
MseI	TTAA	2 cut(s)	245, 420
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	233, 448, 457
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	3 cut(s)	4, 133, 264
NmeAIII	GCCGAG	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	235
Ple19I	CGATCG	1 cut(s)	267
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	267
RsaI	GTAC	3 cut(s)	126, 160, 205
RsaNI	GTAC	3 cut(s)	125, 159, 204
SaqAI	TTAA	2 cut(s)	245, 420
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	3 cut(s)	4, 133, 264
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	229, 300
SetI	ASST	6 cut(s)	81, 87, 278, 310, 420, 457
SfaNI	GCATC	2 cut(s)	208, 451
SmlI	CTYRAG	2 cut(s)	299, 413
SmoI	CTYRAG	2 cut(s)	299, 413
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	5 cut(s)	176, 191, 359, 436, 472
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	2 cut(s)	207, 222
TaqI	TCGA	3 cut(s)	255, 263, 349
TasI	AATT	5 cut(s)	176, 191, 359, 436, 472
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	245, 420
Tru9I	TTAA	2 cut(s)	245, 420
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	104
XapI	RAATTY	1 cut(s)	436
XspI	CTAG	2 cut(s)	207, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.