RLG00000036524

CUE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013650
Physical Location & Seq
Forward (+)
81545452 .. 81546219
768 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036524

Sequence Viewer

Length: 582 bp
ATGTCTGCAGCAGTAGTACTGTGTGGAAGCAAAAGGTCCTTCTTTGAAGATCTTCCGCCATCACCATCGCCGCCTTATCTCTCCAAGAGACTACGCTGCTCTTCTTCTTCTTCTACTACTTCTTCTGCCGACGAGTCAACCATTCAACACTTCTGGGTTCCTTATGTACTCTCTCAACTTCGTTCTCTCTTCCCCAACATGGACCCCCAGGTTCTCGAGAGATCACTGCAAGAATCCGGCTACGATTTGGATGCCACAGTCAAGAGCCTCAACGACCTTGCCGAAAAACAGAACGATTTTTCAAGTTCTGCTGAAAAAGTAGAACAGCTTCCTCTTGATGGCCCGGGATGGATCGACTTGGCTATCGGAGAGATAGCGAGTGCTACTAGTAATGAGAGGTGTAAAGAGCATGAGAGGAGAGACCAGGAATTGAAGAACCTGAAGGACTTGGTGGATCAACAAGAGGAGCGGTTGCGGAAGCTTGAAATTTACAAGTATGGCTTGCAGTTGCAGCTGAATGAGGCTTTGAAGAACTACTACTCCAGTGTCCCAGCTGGACGTTTCAACCCTGATGTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

194

Amino Acids

21.81

Weight (kDa)

4.97

Isoelectric Point (pI)

65.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CUE PF02845 57 - 90 3.6e-08 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 469
AciI CCGC 4 cut(s) 56, 71, 469, 475
AclWI GGATC 2 cut(s) 359, 462
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 2 cut(s) 18, 168
AfiI CCNNNNNNNGG 2 cut(s) 199, 338
AgsI TTSAA 7 cut(s) 47, 146, 303, 433, 485, 529, 565
AhlI ACTAGT 1 cut(s) 386
AjnI CCWGG 2 cut(s) 207, 423
AloI GAACNNNNNNTCC 2 cut(s) 524, 556
AluBI AGCT 4 cut(s) 328, 481, 514, 554
AluI AGCT 4 cut(s) 328, 481, 514, 554
Alw26I GTCTC 2 cut(s) 82, 414
AlwI GGATC 2 cut(s) 359, 462
Ama87I CYCGRG 2 cut(s) 215, 343
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 3 cut(s) 8, 96, 511
ApoI RAATTY 1 cut(s) 486
Asp700I GAANNNNTTC 2 cut(s) 51, 327
AspS9I GGNCC 3 cut(s) 36, 202, 341
AsuC2I CCSGG 2 cut(s) 344, 345
AsuHPI GGTGA 1 cut(s) 54
AvaI CYCGRG 2 cut(s) 215, 343
AvaII GGWCC 2 cut(s) 36, 202
BarI GAAGNNNNNNTAC 4 cut(s) 312, 344, 521, 553
BbvI GCAGC 3 cut(s) 20, 83, 523
BccI CCATC 4 cut(s) 67, 73, 332, 342
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 2 cut(s) 209, 425
BcnI CCSGG 2 cut(s) 344, 345
BcoDI GTCTC 2 cut(s) 82, 414
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 49
BisI GCNGC 4 cut(s) 9, 71, 97, 512
BlsI GCNGC 4 cut(s) 10, 72, 98, 513
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 4 cut(s) 209, 344, 345, 425
Bme18I GGWCC 2 cut(s) 36, 202
BmeT110I CYCGRG 2 cut(s) 215, 343
BmgT120I GGNCC 3 cut(s) 36, 202, 341
BmiI GGNNCC 2 cut(s) 159, 204
BmrFI CCNGG 4 cut(s) 209, 344, 345, 425
BmsI GCATC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 526
BpuMI CCSGG 2 cut(s) 344, 345
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 207, 343
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 338
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 209, 425
BseDI CCNNGG 2 cut(s) 207, 343
BseGI GGATG 2 cut(s) 256, 353
BseLI CCNNNNNNNGG 2 cut(s) 199, 338
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 2 cut(s) 430, 479
BseXI GCAGC 3 cut(s) 20, 83, 523
BseYI CCCAGC 1 cut(s) 550
BshFI GGCC 1 cut(s) 342
BsiHKCI CYCGRG 2 cut(s) 215, 343
BsiSI CCGG 2 cut(s) 237, 344
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 2 cut(s) 199, 338
BsmAI GTCTC 2 cut(s) 82, 414
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 1 cut(s) 342
Bso31I GGTCTC 1 cut(s) 414
BsoBI CYCGRG 2 cut(s) 215, 343
Bsp143I GATC 4 cut(s) 49, 221, 351, 454
BspACI CCGC 4 cut(s) 56, 71, 469, 475
BspANI GGCC 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 159, 204
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 359, 462
BspQI GCTCTTC 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 2 cut(s) 207, 343
BssMI GATC 4 cut(s) 49, 221, 351, 454
Bst2UI CCWGG 2 cut(s) 209, 425
Bst4CI ACNGT 2 cut(s) 21, 259
Bst6I CTCTTC 2 cut(s) 106, 194
BstC8I GCNNGC 1 cut(s) 503
BstF5I GGATG 2 cut(s) 256, 353
BstKTI GATC 4 cut(s) 52, 224, 354, 457
BstMAI GTCTC 2 cut(s) 82, 414
BstMBI GATC 4 cut(s) 49, 221, 351, 454
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstNI CCWGG 2 cut(s) 209, 425
BstSCI CCNGG 4 cut(s) 207, 342, 343, 423
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 3 cut(s) 20, 83, 523
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 256, 353
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 224, 550
Cac8I GCNNGC 1 cut(s) 503
Cfr13I GGNCC 3 cut(s) 36, 202, 341
Cfr9I CCCGGG 1 cut(s) 343
Csp6I GTAC 2 cut(s) 17, 167
CviAII CATG 2 cut(s) 199, 410
CviQI GTAC 2 cut(s) 17, 167
DpnI GATC 4 cut(s) 51, 223, 353, 456
DpnII GATC 4 cut(s) 49, 221, 351, 454
Eam1104I CTCTTC 2 cut(s) 106, 194
EarI CTCTTC 2 cut(s) 106, 194
EciI GGCGGA 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 36, 202
Eco57I CTGAAG 1 cut(s) 461
Eco88I CYCGRG 2 cut(s) 215, 343
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 207, 423
FaeI CATG 2 cut(s) 202, 413
FaiI YATR 4 cut(s) 165, 200, 411, 498
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 533
FatI CATG 2 cut(s) 198, 409
Fnu4HI GCNGC 4 cut(s) 9, 71, 97, 512
FokI GGATG 2 cut(s) 263, 360
Fsp4HI GCNGC 4 cut(s) 9, 71, 97, 512
FspBI CTAG 1 cut(s) 387
GluI GCNGC 4 cut(s) 9, 71, 97, 512
GsaI CCCAGC 1 cut(s) 554
GsuI CTGGAG 1 cut(s) 526
HaeIII GGCC 1 cut(s) 342
HapII CCGG 2 cut(s) 237, 344
Hin1II CATG 2 cut(s) 202, 413
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 2 cut(s) 134, 233
HpaII CCGG 2 cut(s) 237, 344
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 4 cut(s) 215, 217, 262, 335
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 49, 436
HpyCH4III ACNGT 2 cut(s) 21, 259
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 4 cut(s) 8, 229, 505, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpySE526I ACGT 1 cut(s) 559
Hsp92II CATG 2 cut(s) 202, 413
Kzo9I GATC 4 cut(s) 49, 221, 351, 454
LguI GCTCTTC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 3 cut(s) 20, 83, 523
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 559
MalI GATC 4 cut(s) 51, 223, 353, 456
MbiI CCGCTC 1 cut(s) 469
MboI GATC 4 cut(s) 49, 221, 351, 454
MflI RGATCY 1 cut(s) 49
MluCI AATT 2 cut(s) 428, 486
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 6 cut(s) 278, 342, 390, 408, 457, 514
MroXI GAANNNNTTC 2 cut(s) 51, 327
MseI TTAA 1 cut(s) 580
MspA1I CMGCKG 2 cut(s) 514, 554
MspI CCGG 2 cut(s) 237, 344
MspR9I CCNGG 4 cut(s) 209, 344, 345, 425
MvaI CCWGG 2 cut(s) 209, 425
MwoI GCNNNNNNNGC 1 cut(s) 511
NciI CCSGG 2 cut(s) 344, 345
NdeII GATC 4 cut(s) 49, 221, 351, 454
NlaIII CATG 2 cut(s) 202, 413
NlaIV GGNNCC 2 cut(s) 159, 204
PaeR7I CTCGAG 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PdmI GAANNNNTTC 2 cut(s) 51, 327
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 4 cut(s) 10, 72, 98, 513
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 207, 423
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 2 cut(s) 207, 423
PspN4I GGNNCC 2 cut(s) 159, 204
PspPI GGNCC 3 cut(s) 36, 202, 341
PspPPI RGGWCCY 1 cut(s) 36
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 49
PvuII CAGCTG 2 cut(s) 514, 554
RsaI GTAC 2 cut(s) 18, 168
RsaNI GTAC 2 cut(s) 17, 167
SapI GCTCTTC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 580
SatI GCNGC 4 cut(s) 9, 71, 97, 512
Sau3AI GATC 4 cut(s) 49, 221, 351, 454
Sau96I GGNCC 3 cut(s) 36, 202, 341
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 4 cut(s) 209, 344, 345, 425
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 215
SinI GGWCC 2 cut(s) 36, 202
SlaI CTCGAG 1 cut(s) 215
SmaI CCCGGG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 2 cut(s) 428, 486
SsiI CCGC 4 cut(s) 56, 71, 469, 475
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 4 cut(s) 207, 342, 343, 423
TaaI ACNGT 2 cut(s) 21, 259
TaiI ACGT 1 cut(s) 562
TaqI TCGA 2 cut(s) 216, 354
TasI AATT 2 cut(s) 428, 486
TatI WGTACW 2 cut(s) 16, 166
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 580
Tru9I TTAA 1 cut(s) 580
TscAI CASTG 2 cut(s) 231, 550
TseI GCWGC 3 cut(s) 8, 96, 511
TspMI CCCGGG 1 cut(s) 343
TspRI CASTG 2 cut(s) 231, 550
VpaK11BI GGWCC 2 cut(s) 36, 202
XapI RAATTY 1 cut(s) 486
XhoI CTCGAG 1 cut(s) 215
XmaI CCCGGG 1 cut(s) 343
XmnI GAANNNNTTC 2 cut(s) 51, 327
XspI CTAG 1 cut(s) 387
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.