Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006984.1

Orthogroup ID

OG0013650

Physical Location & Seq

Genomic Coordinates Forward (+)

76569 .. 77090

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006984.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggacccccaggttctcgagagatcactacaagaatcccgctatgatttggatgccacagtcaagagcctcaacgacctttccgagaaacataaagatttttcaagttctgctgaaaaagtagaacagctttgtcttgatggcccgggatggatcgacttggctatcagagagatggcaagtgctactagtgtcgatgatgctagggcacgagcggcgaaagtgctagagggtttcgagaaatcgacatgtgcacgtgtttctgcccagattgctcaaactaaatgtcaaaaggaggaggagaatatgatgctgaaaaagcaaaaggacgcactgctagaagagaacatctttctcaaacgttttgtgcatgtgcagaatgagcggtataaagagcatgaggggagagaccaggaattgaagaacctgaaggacttggtggatcaacaaaaggagcagttgcggaagctagaaatttacaagtatggcttgcagttgcagctgaatgaggctttaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

173

Amino Acids

20.01

Weight (kDa)

5.39

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41870
rosa_chinensis	RchiOBHm_Chr5g0074891 RchiOBHm_Chr5g0075061
rosa_laevigata	RLG00000036524 RLG00000036525
rosa_multiflora	Rmu_co8142168.1_g000001 Rmu_sc0006984.1_g000018 Rmu_sc0006984.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006560 Rroxscaffold_1G00006900
rosa_rugosa	Rorug05G0435800
rosa_samantha	Rh5AG493300 Rh5BG514700 Rh5BG514800 Rh5CG538300 Rh5CG538400 Rh5DG527200
rosa_wichuraiana	Rw5G045740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	215, 385
AciI	CCGC	4 cut(s)	40, 215, 385, 463
AclI	AACGTT	1 cut(s)	361
AclWI	GGATC	2 cut(s)	161, 450
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	449
AcvI	CACGTG	1 cut(s)	257
AflIII	ACRYGT	2 cut(s)	248, 256
AgsI	TTSAA	2 cut(s)	105, 421
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	9, 411
AluBI	AGCT	3 cut(s)	130, 469, 502
AluI	AGCT	3 cut(s)	130, 469, 502
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	402
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	161, 450
Ama87I	CYCGRG	2 cut(s)	17, 145
AoxI	GGCC	1 cut(s)	142
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	1 cut(s)	474
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AspS9I	GGNCC	2 cut(s)	4, 143
AsuC2I	CCSGG	2 cut(s)	146, 147
AvaI	CYCGRG	2 cut(s)	17, 145
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	211, 256
BauI	CACGAG	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	3 cut(s)	134, 144, 169
BciT130I	CCWGG	2 cut(s)	11, 413
BcnI	CCSGG	2 cut(s)	146, 147
BcoDI	GTCTC	1 cut(s)	402
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	5 cut(s)	189, 204, 227, 338, 470
BisI	GCNGC	2 cut(s)	216, 500
BlsI	GCNGC	2 cut(s)	217, 501
Bme1390I	CCNGG	4 cut(s)	11, 146, 147, 413
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	17, 145
BmgT120I	GGNCC	2 cut(s)	4, 143
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	11, 146, 147, 413
BmsI	GCATC	3 cut(s)	43, 190, 300
BpuMI	CCSGG	2 cut(s)	146, 147
BsaAI	YACGTR	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	9, 145
BseBI	CCWGG	2 cut(s)	11, 413
BseDI	CCNNGG	2 cut(s)	9, 145
BseGI	GGATG	2 cut(s)	58, 155
BseRI	GAGGAG	2 cut(s)	311, 314
BseSI	GKGCMC	2 cut(s)	211, 256
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	17, 145
BsiSI	CCGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	144
Bso31I	GGTCTC	1 cut(s)	402
BsoBI	CYCGRG	2 cut(s)	17, 145
Bsp1286I	GDGCHC	2 cut(s)	211, 256
Bsp143I	GATC	3 cut(s)	23, 153, 442
BspACI	CCGC	4 cut(s)	40, 215, 385, 463
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	161, 450
BspTNI	GGTCTC	1 cut(s)	402
BsrBI	CCGCTC	2 cut(s)	215, 385
BssECI	CCNNGG	2 cut(s)	9, 145
BssMI	GATC	3 cut(s)	23, 153, 442
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	11, 413
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	491
BstF5I	GGATG	2 cut(s)	58, 155
BstKTI	GATC	3 cut(s)	26, 156, 445
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	3 cut(s)	23, 153, 442
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 272, 319, 382, 499
BstNI	CCWGG	2 cut(s)	11, 413
BstNSI	RCATGY	2 cut(s)	252, 374
BstSCI	CCNGG	4 cut(s)	9, 144, 145, 411
BstSLI	GKGCMC	2 cut(s)	211, 256
BstV1I	GCAGC	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	58, 155
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	4, 143
Cfr9I	CCCGGG	1 cut(s)	145
CseI	GACGC	1 cut(s)	338
CviAII	CATG	3 cut(s)	249, 371, 398
CviJI	RGCY	8 cut(s)	69, 130, 144, 164, 469, 489, 502, 512
CviKI_1	RGCY	8 cut(s)	69, 130, 144, 164, 469, 489, 502, 512
DpnI	GATC	3 cut(s)	25, 155, 444
DpnII	GATC	3 cut(s)	23, 153, 442
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	449
Eco72I	CACGTG	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	17, 145
EcoRII	CCWGG	2 cut(s)	9, 411
FaeI	CATG	3 cut(s)	252, 374, 401
FaiI	YATR	8 cut(s)	45, 93, 250, 308, 372, 390, 399, 486
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	3 cut(s)	248, 370, 397
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	2 cut(s)	216, 500
FokI	GGATG	2 cut(s)	65, 162
Fsp4HI	GCNGC	2 cut(s)	216, 500
FspBI	CTAG	5 cut(s)	189, 204, 227, 338, 470
GluI	GCNGC	2 cut(s)	216, 500
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	252, 374, 401
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	2 cut(s)	85, 170
Hpy188III	TCNNGA	5 cut(s)	17, 19, 64, 137, 238
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	256, 361
HpyCH4V	TGCA	5 cut(s)	254, 370, 376, 493, 499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 272, 319, 382, 499
HpySE526I	ACGT	2 cut(s)	256, 361
Hsp92II	CATG	3 cut(s)	252, 374, 401
Kzo9I	GATC	3 cut(s)	23, 153, 442
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	6 cut(s)	23, 159, 281, 398, 425, 440
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	3 cut(s)	43, 190, 300
MaeI	CTAG	5 cut(s)	189, 204, 227, 338, 470
MaeII	ACGT	2 cut(s)	256, 361
MalI	GATC	3 cut(s)	25, 155, 444
MbiI	CCGCTC	2 cut(s)	215, 385
MboI	GATC	3 cut(s)	23, 153, 442
MboII	GAAGA	2 cut(s)	353, 433
MhlI	GDGCHC	2 cut(s)	211, 256
MluCI	AATT	3 cut(s)	416, 474, 516
MnlI	CCTC	6 cut(s)	80, 223, 289, 292, 394, 502
MseI	TTAA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	4 cut(s)	11, 146, 147, 413
MvaI	CCWGG	2 cut(s)	11, 413
MwoI	GCNNNNNNNGC	5 cut(s)	215, 272, 319, 382, 499
NciI	CCSGG	2 cut(s)	146, 147
NdeII	GATC	3 cut(s)	23, 153, 442
NlaIII	CATG	3 cut(s)	252, 374, 401
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	252, 374
PaeR7I	CTCGAG	1 cut(s)	17
PciI	ACATGT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	217, 501
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	257
PscI	ACATGT	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	9, 411
PspCI	CACGTG	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	9, 411
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 143
PvuII	CAGCTG	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	2 cut(s)	216, 500
Sau3AI	GATC	3 cut(s)	23, 153, 442
Sau96I	GGNCC	2 cut(s)	4, 143
ScrFI	CCNGG	4 cut(s)	11, 146, 147, 413
SduI	GDGCHC	2 cut(s)	211, 256
SetI	ASST	8 cut(s)	15, 81, 132, 259, 364, 429, 471, 504
SfaNI	GCATC	3 cut(s)	43, 190, 300
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	17
SmaI	CCCGGG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	3 cut(s)	416, 474, 516
SsiI	CCGC	4 cut(s)	40, 215, 385, 463
SspMI	CTAG	5 cut(s)	189, 204, 227, 338, 470
StyD4I	CCNGG	4 cut(s)	9, 144, 145, 411
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	259, 364
TaqI	TCGA	5 cut(s)	18, 156, 195, 237, 245
TasI	AATT	3 cut(s)	416, 474, 516
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	1 cut(s)	499
TspMI	CCCGGG	1 cut(s)	145
TspRI	CASTG	1 cut(s)	339
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	2 cut(s)	252, 374
XhoI	CTCGAG	1 cut(s)	17
XmaI	CCCGGG	1 cut(s)	145
XspI	CTAG	5 cut(s)	189, 204, 227, 338, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.