Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013650

Physical Location & Seq

Genomic Coordinates Forward (+)

75298584 .. 75299668

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG538300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGACCCCCAGGTTCTCGAGAGATCACTACAAGAATCCCGCTATGATTTGGATGCCACAGTCAAGAGCCTCAACGACCTTTCCGAGAAACATAAAGATTTTTCAAGTTCTGCTGAAAAAGTAGAACAGCTTTGTCTTGATGGCCCGGGATGGATCGACTTGGCTATCAGAGAGATGGCAAGTGCTACTAGTGTCGATGATGCTAGGGCACGAGCGGCGAAAGTGCTAGAGGGTTTCGAGAAATCGACATGTGCACGTGTTTCTGCCCAGATTGCTCAAACTAAATGTCAAAAGGAGGAGGAGAATATGATCGATGCTGAAAAAGCAAAAGGACGCACTGCTAGAAGAGAACATCTTTCTCAAACGTTTTGTGCATGTGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

128

Amino Acids

14.22

Weight (kDa)

5.16

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41870
rosa_chinensis	RchiOBHm_Chr5g0074891 RchiOBHm_Chr5g0075061
rosa_laevigata	RLG00000036524 RLG00000036525
rosa_multiflora	Rmu_co8142168.1_g000001 Rmu_sc0006984.1_g000018 Rmu_sc0006984.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006560 Rroxscaffold_1G00006900
rosa_rugosa	Rorug05G0435800
rosa_samantha	Rh5AG493300 Rh5BG514700 Rh5BG514800 Rh5CG538300 Rh5CG538400 Rh5DG527200
rosa_wichuraiana	Rw5G045740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	215
AciI	CCGC	2 cut(s)	40, 215
AclI	AACGTT	1 cut(s)	365
AclWI	GGATC	1 cut(s)	161
AcvI	CACGTG	1 cut(s)	257
AflIII	ACRYGT	2 cut(s)	248, 256
AgsI	TTSAA	1 cut(s)	105
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw21I	GWGCWC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	2 cut(s)	17, 145
AoxI	GGCC	1 cut(s)	142
ApaLI	GTGCAC	1 cut(s)	252
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AspS9I	GGNCC	2 cut(s)	4, 143
AsuC2I	CCSGG	2 cut(s)	146, 147
AvaI	CYCGRG	2 cut(s)	17, 145
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	211, 256
BauI	CACGAG	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	256
BccI	CCATC	3 cut(s)	134, 144, 169
BciT130I	CCWGG	1 cut(s)	11
BcnI	CCSGG	2 cut(s)	146, 147
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	4 cut(s)	189, 204, 227, 342
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	3 cut(s)	11, 146, 147
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	17, 145
BmgT120I	GGNCC	2 cut(s)	4, 143
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	11, 146, 147
BmsI	GCATC	3 cut(s)	43, 190, 304
BpuMI	CCSGG	2 cut(s)	146, 147
Bsa29I	ATCGAT	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	9, 145
BseBI	CCWGG	1 cut(s)	11
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	9, 145
BseGI	GGATG	2 cut(s)	58, 155
BseRI	GAGGAG	2 cut(s)	311, 314
BseSI	GKGCMC	2 cut(s)	211, 256
BshFI	GGCC	1 cut(s)	144
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	17, 145
BsiSI	CCGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	144
BsoBI	CYCGRG	2 cut(s)	17, 145
Bsp1286I	GDGCHC	2 cut(s)	211, 256
Bsp143I	GATC	3 cut(s)	23, 153, 309
BspACI	CCGC	2 cut(s)	40, 215
BspANI	GGCC	1 cut(s)	144
BspDI	ATCGAT	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	9, 145
BssMI	GATC	3 cut(s)	23, 153, 309
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	58, 155
BstKTI	GATC	3 cut(s)	26, 156, 312
BstMBI	GATC	3 cut(s)	23, 153, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 272, 323
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	252, 378
BstSCI	CCNGG	3 cut(s)	9, 144, 145
BstSLI	GKGCMC	2 cut(s)	211, 256
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	58, 155
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	4, 143
Cfr9I	CCCGGG	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	312
CseI	GACGC	1 cut(s)	342
CviAII	CATG	2 cut(s)	249, 375
CviJI	RGCY	4 cut(s)	69, 130, 144, 164
CviKI_1	RGCY	4 cut(s)	69, 130, 144, 164
DpnI	GATC	3 cut(s)	25, 155, 311
DpnII	GATC	3 cut(s)	23, 153, 309
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	17, 145
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	252, 378
FaiI	YATR	5 cut(s)	45, 93, 250, 308, 376
FatI	CATG	2 cut(s)	248, 374
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	65, 162
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	4 cut(s)	189, 204, 227, 342
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	342
Hin1II	CATG	2 cut(s)	252, 378
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	2 cut(s)	85, 170
Hpy188III	TCNNGA	5 cut(s)	17, 19, 64, 137, 238
Hpy8I	GTNNAC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	256, 365
HpyCH4V	TGCA	3 cut(s)	254, 374, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 272, 323
HpySE526I	ACGT	2 cut(s)	256, 365
Hsp92II	CATG	2 cut(s)	252, 378
Kzo9I	GATC	3 cut(s)	23, 153, 309
LpnPI	CCDG	3 cut(s)	23, 159, 281
LweI	GCATC	3 cut(s)	43, 190, 304
MaeI	CTAG	4 cut(s)	189, 204, 227, 342
MaeII	ACGT	2 cut(s)	256, 365
MalI	GATC	3 cut(s)	25, 155, 311
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	3 cut(s)	23, 153, 309
MboII	GAAGA	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	211, 256
MnlI	CCTC	4 cut(s)	80, 223, 289, 292
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	3 cut(s)	11, 146, 147
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	215, 272, 323
NciI	CCSGG	2 cut(s)	146, 147
NdeII	GATC	3 cut(s)	23, 153, 309
NlaIII	CATG	2 cut(s)	252, 378
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	252, 378
PaeR7I	CTCGAG	1 cut(s)	17
PciI	ACATGT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	257
PscI	ACATGT	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	9
PspCI	CACGTG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 143
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	23, 153, 309
Sau96I	GGNCC	2 cut(s)	4, 143
ScrFI	CCNGG	3 cut(s)	11, 146, 147
SduI	GDGCHC	2 cut(s)	211, 256
SetI	ASST	5 cut(s)	15, 81, 132, 259, 368
SfaNI	GCATC	3 cut(s)	43, 190, 304
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	17
SmaI	CCCGGG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	188
SsiI	CCGC	2 cut(s)	40, 215
SspMI	CTAG	4 cut(s)	189, 204, 227, 342
StyD4I	CCNGG	3 cut(s)	9, 144, 145
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	259, 368
TaqI	TCGA	6 cut(s)	18, 156, 195, 237, 245, 312
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	35
TscAI	CASTG	1 cut(s)	343
TspMI	CCCGGG	1 cut(s)	145
TspRI	CASTG	1 cut(s)	343
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	2 cut(s)	252, 378
XhoI	CTCGAG	1 cut(s)	17
XmaI	CCCGGG	1 cut(s)	145
XspI	CTAG	4 cut(s)	189, 204, 227, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.