Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013650

Physical Location & Seq

Genomic Coordinates Reverse (-)

8562103 .. 8562612

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATCTCCAGATTCTTGATAGAGCATTGCAAGAGTCCTGCTACGATATTGATGCCACCATCAAGAGCCTGAGCGAGCTTCACCTGACGGAGATGCTTACTTCTGGTTCTACTGAAAAAGTACCACAAGATCAGAAACTCATTCCTGAAGATGGTACTGCGGATTGGGTTGAATTGGTTATCGGAGAATTGATAACTTGTACTAGTGTGGAAGATGCTAGGGCACGCGCTGCAAAAGTGTTAAAGGGTTTCAAGAAATCGATCGGTGCAAGCTTTGAAAAGGAGAATATGGTGCTCAAGCGTGCTGTGTGTGTGCTACTTGAACGACAGAAAGAGTTAGAAGGTCGAAGCCGAGAATTGAAGCATATGAAGGAGTTGGTGGCTCAACAGCAAGAGCAGTTGAGAGCGCTTGAGGTTAACAACTATGGCTTGAATTTGCATCTGATGCAAGCTCTGCAATGCAAGTCCAATTTTGTCCCTACTGGAAGTTTCAATCCTGATGTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

169

Amino Acids

19.0

Weight (kDa)

5.31

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41870
rosa_chinensis	RchiOBHm_Chr5g0074891 RchiOBHm_Chr5g0075061
rosa_laevigata	RLG00000036524 RLG00000036525
rosa_multiflora	Rmu_co8142168.1_g000001 Rmu_sc0006984.1_g000018 Rmu_sc0006984.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006560 Rroxscaffold_1G00006900
rosa_rugosa	Rorug05G0435800
rosa_samantha	Rh5AG493300 Rh5BG514700 Rh5BG514800 Rh5CG538300 Rh5CG538400 Rh5DG527200
rosa_wichuraiana	Rw5G045740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	228
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	3 cut(s)	123, 157, 202
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	7 cut(s)	173, 253, 278, 323, 361, 433, 493
AhlI	ACTAGT	1 cut(s)	203
AluBI	AGCT	3 cut(s)	79, 273, 452
AluI	AGCT	3 cut(s)	79, 273, 452
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	433
AspLEI	GCGC	2 cut(s)	230, 409
AsuHPI	GGTGA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	68, 146
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	204, 219
BfoI	RGCGCY	1 cut(s)	410
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmsI	GCATC	5 cut(s)	43, 84, 205, 435, 448
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	281, 431
Bsa29I	ATCGAT	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	2 cut(s)	26, 464
BseCI	ATCGAT	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	2 cut(s)	26, 464
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	264
BshVI	ATCGAT	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	226, 297
Bsp143I	GATC	3 cut(s)	4, 130, 261
BspACI	CCGC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	63
BspDI	ATCGAT	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	228
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	26, 464
BsrI	ACTGG	1 cut(s)	487
BssMI	GATC	3 cut(s)	4, 130, 261
BstAPI	GCANNNNNTGC	3 cut(s)	230, 445, 454
BstC8I	GCNNGC	5 cut(s)	77, 226, 271, 303, 450
BstDEI	CTNAG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	230, 409
BstKTI	GATC	3 cut(s)	7, 133, 264
BstMBI	GATC	3 cut(s)	4, 130, 261
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 445, 454
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	260
Cac8I	GCNNGC	5 cut(s)	77, 226, 271, 303, 450
CfoI	GCGC	2 cut(s)	230, 409
ClaI	ATCGAT	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	122, 156, 201
CviJI	RGCY	7 cut(s)	69, 79, 273, 351, 383, 429, 452
CviKI_1	RGCY	7 cut(s)	69, 79, 273, 351, 383, 429, 452
CviQI	GTAC	3 cut(s)	122, 156, 201
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	6, 132, 263
DpnII	GATC	3 cut(s)	4, 130, 261
Eco47III	AGCGCT	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	168
FaiI	YATR	4 cut(s)	290, 366, 368, 426
FaqI	GGGAC	1 cut(s)	461
FauNDI	CATATG	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	204, 219
GlaI	GCGC	2 cut(s)	229, 408
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	410
HhaI	GCGC	2 cut(s)	230, 409
Hin6I	GCGC	2 cut(s)	228, 407
HinP1I	GCGC	2 cut(s)	228, 407
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	2 cut(s)	13, 35
HpaI	GTTAAC	1 cut(s)	418
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	135, 185, 444
Hpy188III	TCNNGA	6 cut(s)	10, 17, 64, 146, 253, 497
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	335, 364
HpyCH4V	TGCA	7 cut(s)	31, 233, 269, 439, 448, 457, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 445, 454
HpyF3I	CTNAG	1 cut(s)	71
HspAI	GCGC	2 cut(s)	228, 407
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	4, 130, 261
LpnPI	CCDG	7 cut(s)	23, 52, 83, 90, 98, 159, 468
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	5 cut(s)	43, 84, 205, 435, 448
MaeI	CTAG	2 cut(s)	204, 219
MalI	GATC	3 cut(s)	6, 132, 263
MboI	GATC	3 cut(s)	4, 130, 261
MboII	GAAGA	2 cut(s)	161, 224
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	226, 297
MluCI	AATT	5 cut(s)	173, 188, 356, 433, 469
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	1 cut(s)	406
MseI	TTAA	2 cut(s)	242, 417
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	230, 445, 454
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	3 cut(s)	4, 130, 261
NmeAIII	GCCGAG	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	232
Ple19I	CGATCG	1 cut(s)	264
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	264
RsaI	GTAC	3 cut(s)	123, 157, 202
RsaNI	GTAC	3 cut(s)	122, 156, 201
SaqAI	TTAA	2 cut(s)	242, 417
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	4, 130, 261
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	226, 297
SetI	ASST	6 cut(s)	81, 87, 275, 346, 417, 454
SfaNI	GCATC	5 cut(s)	43, 84, 205, 435, 448
SmlI	CTYRAG	2 cut(s)	296, 410
SmoI	CTYRAG	2 cut(s)	296, 410
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	5 cut(s)	173, 188, 356, 433, 469
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	2 cut(s)	204, 219
TaqI	TCGA	2 cut(s)	260, 346
TasI	AATT	5 cut(s)	173, 188, 356, 433, 469
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	242, 417
Tru9I	TTAA	2 cut(s)	242, 417
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	383
TspGWI	ACGGA	1 cut(s)	104
XapI	RAATTY	1 cut(s)	433
XspI	CTAG	2 cut(s)	204, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.