Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007439

Physical Location & Seq

Genomic Coordinates Forward (+)

36154515 .. 36162309

Gene Structure 7795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGACAAATTCTTAGTCCCTTTGAAACCCAAACCTCAACTTCCCAGCAAACCCATTCCAAGGCGAAGATGGCATCGGAGCTTGATCGAATTGACCGGAAAGCTCGAACCCAACTACCGCCACTCCGTCTCCGGCTTACTCATGCAATCCTACTCCGAGCTTAGGGTGTTTCGGCATTCGTACCACATCGAAGGAAACCCGTGTCAAACCCATATGAATCGGGTGGTTAATGGCACATACCAGGCCCCGGTAACAAAGGAAGGAATCTCAGCCCTGGATTTTGACAACAAGGGGATATACTTGGCATCCGTGACAAAATCAGGGTGCTTAACAGTTCATGATTTTGAAACTCTTTATTGCCAGAGTAACGAACCATTCTTATGCTTGGAAGAAGATGAAGCAAAACATGTGCTGCACCTTTCTTTACCTCAACAACTAGACTTTGTCCGGTGGAATCGTGCCAACCAAGATGAGGTTGTTTGCACATCTTTGAAGAGGAATGAAGTACTTGTATTTGACATTAGTTATATCTCTTCTACACCATCTGAAGTTTTAAGAACAAAACCCCGTCCTGCTATCCTTGGGTCTAATATTCAGAGAGGTCTTTCTGATATTGCCTTTACCTCTTGCGAAAACTCAAGGGTACTCGCTTCTGATACGGATGGTGTTATCCATATATGGGACAGGCGAACTAGTACCCTTCCTTATCTTGAACTTACAGCGAATTTCCGTGGAAGCCTTAATAGTATCCAATTAAATGTGGAAGATCAGATCATTTTTGGAGCTGGAAAGCATGGGGTTATCTATGCTTGGGATCTTCGTGGTGGAAGGACATCTTCTTTCTTCAAGGGTTCTAAAGAGGTATCTCGTCCACCTCTCACCTCTCTAAAGTTATCTTCAATGTTGGAAAAGATTGGGCCTCTGAAGGAACAATCAGCCATTGTTTCTAAGGAAATACACTCCATTAATCTTGATCCTTGTTGCCCACACCAATTGGCATTCCATCTTGATGACGGTTGGTCAGGAGTGCTGGATGTTCATAATCTCGATGTTACACATATTCATTGTCCTCCACCAGCTTGGTTAAATGATTCTGTTGGGTCAGATCTATCATTTTTGAGGAAACCTTCATGGCTACCTACAAACTCTATATATGTGGTTGGATCATCAACTGACAGCGGCATTCATATTTTGGATTTCTATCCAGATTCAAGCTCTCCTAGCCATGTGGATTACAATGAGGATGCATCTGGGGTAAAGGATCAACATATGCGAAACAGGTTTATTAAACTGTCTGAAGGAGTTACTGCATGTGCAGTTCATCCCCTCAATAGTACAATCATCGCCGGAACTAAGCATTCATCTTTGCTCATGATTTCCCAAACGCACGAGTCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

467

Amino Acids

52.19

Weight (kDa)

6.62

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920
fragaria_vesca	FvH4_3g43320 FvH4_3g43320
malus_domestica	MD11G1027100.v1.1
prunus_persica	Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1
pyrus_communis	pycom11g02070
rosa_chinensis	RchiOBHm_Chr5g0077431
rosa_laevigata	RLG00000036696
rosa_multiflora	Rmu_sc0004277.1_g000083
rosa_roxburghii	Rroxscaffold_1G00004480
rosa_rugosa	Rorug05G0454900
rosa_samantha	Rh5AG509900 Rh5BG531500 Rh5CG555800 Rh5DG543600
rosa_wichuraiana	Rw5G046770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	118, 1179
AclWI	GGATC	4 cut(s)	822, 968, 1171, 1269
AcsI	RAATTY	2 cut(s)	8, 724
AcuI	CTGAAG	3 cut(s)	567, 944, 1317
AfaI	GTAC	5 cut(s)	182, 507, 645, 697, 1336
AfiI	CCNNNNNNNGG	5 cut(s)	60, 162, 247, 472, 679
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	7 cut(s)	25, 347, 493, 713, 847, 900, 1212
AhdI	GACNNNNNGTC	1 cut(s)	1018
AhlI	ACTAGT	1 cut(s)	692
AjnI	CCWGG	2 cut(s)	240, 273
AluBI	AGCT	6 cut(s)	81, 103, 160, 785, 1079, 1215
AluI	AGCT	6 cut(s)	81, 103, 160, 785, 1079, 1215
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	4 cut(s)	822, 968, 1171, 1269
AoxI	GGCC	2 cut(s)	243, 917
ApeKI	GCWGC	1 cut(s)	412
ApoI	RAATTY	2 cut(s)	8, 724
ArsI	GACNNNNNNTTYG	1 cut(s)	32
AseI	ATTAAT	1 cut(s)	966
AspS9I	GGNCC	2 cut(s)	244, 917
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	871
BauI	CACGAG	1 cut(s)	1388
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	4 cut(s)	63, 550, 656, 1011
BciT130I	CCWGG	2 cut(s)	242, 275
BciVI	GTATCC	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	133
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	3 cut(s)	437, 693, 1221
BfuI	GTATCC	1 cut(s)	758
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	2 cut(s)	413, 1180
BlsI	GCNGC	2 cut(s)	414, 1181
BmcAI	AGTACT	1 cut(s)	507
Bme1390I	CCNGG	3 cut(s)	242, 248, 275
BmeRI	GACNNNNNGTC	1 cut(s)	1018
BmgT120I	GGNCC	2 cut(s)	244, 917
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	3 cut(s)	242, 248, 275
BmsI	GCATC	4 cut(s)	82, 314, 1234, 1256
Bpu10I	CCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	1200
BsaJI	CCNNGG	5 cut(s)	59, 246, 273, 580, 730
BsaWI	WCCGGW	2 cut(s)	95, 447
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 113, 137, 143
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 162, 247, 472, 679
Bse8I	GATNNNNATC	1 cut(s)	1200
BseBI	CCWGG	2 cut(s)	242, 275
BseDI	CCNNGG	5 cut(s)	59, 246, 273, 580, 730
BseGI	GGATG	5 cut(s)	305, 667, 1039, 1249, 1321
BseJI	GATNNNNATC	1 cut(s)	1200
BseLI	CCNNNNNNNGG	5 cut(s)	60, 162, 247, 472, 679
BseMII	CTCAG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	2 cut(s)	398, 1335
BshFI	GGCC	2 cut(s)	245, 919
BsiSI	CCGG	5 cut(s)	96, 132, 248, 448, 1347
BslFI	GGGAC	2 cut(s)	2, 695
BslI	CCNNNNNNNGG	5 cut(s)	60, 162, 247, 472, 679
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	2 cut(s)	2, 695
BsmI	GAATGC	4 cut(s)	175, 998, 1182, 1357
BsnI	GGCC	2 cut(s)	245, 919
Bsp143I	GATC	8 cut(s)	84, 766, 771, 814, 973, 1105, 1163, 1261
BspACI	CCGC	2 cut(s)	118, 1179
BspANI	GGCC	2 cut(s)	245, 919
BspCNI	CTCAG	1 cut(s)	281
BspHI	TCATGA	2 cut(s)	337, 1371
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	4 cut(s)	822, 968, 1171, 1269
BssECI	CCNNGG	5 cut(s)	59, 246, 273, 580, 730
BssMI	GATC	8 cut(s)	84, 766, 771, 814, 973, 1105, 1163, 1261
BssSI	CACGAG	1 cut(s)	1388
BssT1I	CCWWGG	2 cut(s)	59, 580
Bst2BI	CACGAG	1 cut(s)	1388
Bst2UI	CCWGG	2 cut(s)	242, 275
Bst4CI	ACNGT	3 cut(s)	334, 1016, 1293
Bst6I	CTCTTC	2 cut(s)	488, 538
BstDEI	CTNAG	5 cut(s)	13, 161, 268, 948, 1353
BstDSI	CCRYGG	1 cut(s)	730
BstF5I	GGATG	5 cut(s)	305, 667, 1039, 1249, 1321
BstKTI	GATC	8 cut(s)	87, 769, 774, 817, 976, 1108, 1166, 1264
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	8 cut(s)	84, 766, 771, 814, 973, 1105, 1163, 1261
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 1221
BstNI	CCWGG	2 cut(s)	242, 275
BstNSI	RCATGY	2 cut(s)	410, 1314
BstSCI	CCNGG	3 cut(s)	240, 246, 273
BstV1I	GCAGC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	814, 1105
BstXI	CCANNNNNNTGG	1 cut(s)	1080
BstYI	RGATCY	2 cut(s)	814, 1105
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	2 cut(s)	245, 919
BtgI	CCRYGG	1 cut(s)	730
BtgZI	GCGATG	1 cut(s)	1327
BtsCI	GGATG	5 cut(s)	305, 667, 1039, 1249, 1321
CciI	TCATGA	2 cut(s)	337, 1371
Cfr13I	GGNCC	2 cut(s)	244, 917
Csp6I	GTAC	5 cut(s)	181, 506, 644, 696, 1335
CspCI	CAANNNNNGTGG	2 cut(s)	975, 1010
CviAII	CATG	8 cut(s)	142, 338, 407, 794, 1131, 1226, 1311, 1372
CviQI	GTAC	5 cut(s)	181, 506, 644, 696, 1335
DdeI	CTNAG	5 cut(s)	13, 161, 268, 948, 1353
DpnI	GATC	8 cut(s)	86, 768, 773, 816, 975, 1107, 1165, 1263
DpnII	GATC	8 cut(s)	84, 766, 771, 814, 973, 1105, 1163, 1261
DriI	GACNNNNNGTC	1 cut(s)	1018
Eam1104I	CTCTTC	2 cut(s)	488, 538
Eam1105I	GACNNNNNGTC	1 cut(s)	1018
EarI	CTCTTC	2 cut(s)	488, 538
Eco130I	CCWWGG	2 cut(s)	59, 580
Eco57I	CTGAAG	3 cut(s)	567, 944, 1317
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	240, 273
EcoT14I	CCWWGG	2 cut(s)	59, 580
EcoT22I	ATGCAT	1 cut(s)	1249
ErhI	CCWWGG	2 cut(s)	59, 580
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	8 cut(s)	145, 341, 410, 797, 1134, 1229, 1314, 1375
FalI	AAGNNNNNCTT	2 cut(s)	820, 852
FaqI	GGGAC	2 cut(s)	2, 695
FatI	CATG	8 cut(s)	141, 337, 406, 793, 1130, 1225, 1310, 1371
FauNDI	CATATG	2 cut(s)	213, 1269
Fnu4HI	GCNGC	2 cut(s)	413, 1180
FokI	GGATG	5 cut(s)	292, 674, 1046, 1256, 1308
Fsp4HI	GCNGC	2 cut(s)	413, 1180
FspBI	CTAG	3 cut(s)	437, 693, 1221
GluI	GCNGC	2 cut(s)	413, 1180
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	245, 919
HapII	CCGG	5 cut(s)	96, 132, 248, 448, 1347
Hin1II	CATG	8 cut(s)	145, 341, 410, 797, 1134, 1229, 1314, 1375
HinfI	GANTC	6 cut(s)	217, 264, 454, 1091, 1208, 1391
HpaII	CCGG	5 cut(s)	96, 132, 248, 448, 1347
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188III	TCNNGA	8 cut(s)	338, 710, 971, 1007, 1023, 1046, 1205, 1372
Hpy8I	GTNNAC	1 cut(s)	872
HpyAV	CCTTC	7 cut(s)	185, 254, 710, 822, 919, 1137, 1292
HpyCH4III	ACNGT	3 cut(s)	334, 1016, 1293
HpyCH4V	TGCA	6 cut(s)	145, 415, 483, 1247, 1310, 1316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 1221
HpyF3I	CTNAG	5 cut(s)	13, 161, 268, 948, 1353
Hsp92II	CATG	8 cut(s)	145, 341, 410, 797, 1134, 1229, 1314, 1375
Kzo9I	GATC	8 cut(s)	84, 766, 771, 814, 973, 1105, 1163, 1261
LmnI	GCTCC	2 cut(s)	78, 782
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	4 cut(s)	82, 314, 1234, 1256
MaeI	CTAG	3 cut(s)	437, 693, 1221
MaeIII	GTNAC	5 cut(s)	250, 310, 365, 1051, 1303
MalI	GATC	8 cut(s)	86, 768, 773, 816, 975, 1107, 1165, 1263
MboI	GATC	8 cut(s)	84, 766, 771, 814, 973, 1105, 1163, 1261
MfeI	CAATTG	1 cut(s)	992
MflI	RGATCY	2 cut(s)	814, 1105
MluCI	AATT	5 cut(s)	8, 89, 724, 752, 992
MlyI	GAGTC	1 cut(s)	1400
MmeI	TCCRAC	2 cut(s)	885, 1141
Mph1103I	ATGCAT	1 cut(s)	1249
MseI	TTAA	9 cut(s)	228, 329, 554, 741, 755, 966, 1085, 1287, 1399
MslI	CAYNNNNRTG	2 cut(s)	379, 1008
MspA1I	CMGCKG	1 cut(s)	1179
MspI	CCGG	5 cut(s)	96, 132, 248, 448, 1347
MspR9I	CCNGG	3 cut(s)	242, 248, 275
MunI	CAATTG	1 cut(s)	992
Mva1269I	GAATGC	4 cut(s)	175, 998, 1182, 1357
MvaI	CCWGG	2 cut(s)	242, 275
MwoI	GCNNNNNNNGC	2 cut(s)	70, 1221
NciI	CCSGG	1 cut(s)	248
NdeI	CATATG	2 cut(s)	213, 1269
NdeII	GATC	8 cut(s)	84, 766, 771, 814, 973, 1105, 1163, 1261
NlaIII	CATG	8 cut(s)	145, 341, 410, 797, 1134, 1229, 1314, 1375
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	1249
NspI	RCATGY	2 cut(s)	410, 1314
PagI	TCATGA	2 cut(s)	337, 1371
PciI	ACATGT	1 cut(s)	406
PctI	GAATGC	4 cut(s)	175, 998, 1182, 1357
PfeI	GAWTC	5 cut(s)	217, 264, 454, 1091, 1208
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	414, 1181
PleI	GAGTC	1 cut(s)	1399
PpsI	GAGTC	1 cut(s)	1399
PscI	ACATGT	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	966
Psp6I	CCWGG	2 cut(s)	240, 273
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	2 cut(s)	240, 273
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	244, 917
PsuI	RGATCY	2 cut(s)	814, 1105
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	5 cut(s)	182, 507, 645, 697, 1336
RsaNI	GTAC	5 cut(s)	181, 506, 644, 696, 1335
RseI	CAYNNNNRTG	2 cut(s)	379, 1008
SaqAI	TTAA	9 cut(s)	228, 329, 554, 741, 755, 966, 1085, 1287, 1399
SatI	GCNGC	2 cut(s)	413, 1180
Sau3AI	GATC	8 cut(s)	84, 766, 771, 814, 973, 1105, 1163, 1261
Sau96I	GGNCC	2 cut(s)	244, 917
ScaI	AGTACT	1 cut(s)	507
SchI	GAGTC	1 cut(s)	1400
ScrFI	CCNGG	3 cut(s)	242, 248, 275
SfaNI	GCATC	4 cut(s)	82, 314, 1234, 1256
SmiMI	CAYNNNNRTG	2 cut(s)	379, 1008
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	5 cut(s)	8, 89, 724, 752, 992
SsiI	CCGC	2 cut(s)	118, 1179
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	437, 693, 1221
StyD4I	CCNGG	3 cut(s)	240, 246, 273
StyI	CCWWGG	2 cut(s)	59, 580
TaaI	ACNGT	3 cut(s)	334, 1016, 1293
TaqI	TCGA	4 cut(s)	87, 105, 189, 1047
TasI	AATT	5 cut(s)	8, 89, 724, 752, 992
TatI	WGTACW	2 cut(s)	505, 1334
TauI	GCSGC	1 cut(s)	1182
TfiI	GAWTC	5 cut(s)	217, 264, 454, 1091, 1208
Tru1I	TTAA	9 cut(s)	228, 329, 554, 741, 755, 966, 1085, 1287, 1399
Tru9I	TTAA	9 cut(s)	228, 329, 554, 741, 755, 966, 1085, 1287, 1399
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	310
TspGWI	ACGGA	4 cut(s)	115, 298, 674, 719
Tth111I	GACNNNGTC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	2 cut(s)	8, 724
XceI	RCATGY	2 cut(s)	410, 1314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XspI	CTAG	3 cut(s)	437, 693, 1221
ZrmI	AGTACT	1 cut(s)	507
Zsp2I	ATGCAT	1 cut(s)	1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.