Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007439

Physical Location & Seq

Genomic Coordinates Forward (+)

62839396 .. 62840391

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0454900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTTCAAATTAAGAAACAAGAGGAGGCCTCAGCCTCAGCCTCAGCCCCAGCATCAGCTCATGAGTCAGCCTCTGCCTCAGCCCCAGCCCCCCCAGCCTCAGCCTCAGCCACAGCCTCAGCCTCAGCCTCAGCCGCACCCTAGGCCCCAGCCTCAGCCTCAGATGTGCCTACTCGAATTCAACTACTGTGAATGTGAAGGCTGTGACAAGGACTTCGCAAAATTTCAGAAACTTGTTGAAAAGAATTACGGTGTCCAAAAACCGAGTTTGGATAAACAGCACAGGATAGTGACTGTAATCGGGACTGGAGATGCCACCGGACTTAAGAAGCTTCTTCAAAAAACCACAAAGAAAAAATACGTCGCGATTGTGCCAACTCCAAAGAAGGAAACTACTGAAGCAGAAAAAGGGGGCAAGGACCCTGAGAAAGAGACTAATCACCCACCACCACAACAACAACGACGTCCTGATGCAAATAACATGGGAGGAACAAGTGGAAGCATATTTCATGTTGGAGAGTCGAGCCGGATGGGCCAAATGGGTCAGTATCCCATGGGTCACCCAGGAGCCCCGCATGGTCAAATGGACCAAACAAGAGCCCAATATGGACGGATGGAGCAGAGGGATCAATATTCAATGGATGGTAATCAAGAATCATCATTCCAGACCAAAAAAAATCAAGAATCATCATGGAACGCTTTCAATGATGAGAATGCCAATAGTTGCACCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.78

Weight (kDa)

9.22

Isoelectric Point (pI)

62.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920
fragaria_vesca	FvH4_3g43320 FvH4_3g43320
malus_domestica	MD11G1027100.v1.1
prunus_persica	Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1
pyrus_communis	pycom11g02070
rosa_chinensis	RchiOBHm_Chr5g0077431
rosa_laevigata	RLG00000036696
rosa_multiflora	Rmu_sc0004277.1_g000083
rosa_roxburghii	Rroxscaffold_1G00004480
rosa_rugosa	Rorug05G0454900
rosa_samantha	Rh5AG509900 Rh5BG531500 Rh5CG555800 Rh5DG543600
rosa_wichuraiana	Rw5G046770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	466
AccII	CGCG	1 cut(s)	365
AciI	CCGC	2 cut(s)	134, 572
AclWI	GGATC	1 cut(s)	633
AcsI	RAATTY	2 cut(s)	176, 221
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	463
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	6 cut(s)	7, 181, 239, 338, 636, 703
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	2 cut(s)	58, 331
AluI	AGCT	2 cut(s)	58, 331
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	633
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	3 cut(s)	26, 143, 532
ApoI	RAATTY	2 cut(s)	176, 221
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
Asp700I	GAANNNNTTC	1 cut(s)	698
AspA2I	CCTAGG	1 cut(s)	140
AspS9I	GGNCC	4 cut(s)	144, 418, 532, 586
AsuHPI	GGTGA	2 cut(s)	431, 551
AvaII	GGWCC	2 cut(s)	418, 586
AvrII	CCTAGG	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	571, 601
BccI	CCATC	4 cut(s)	523, 607, 635, 737
BciT130I	CCWGG	1 cut(s)	564
BciVI	GTATCC	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	531
BisI	GCNGC	1 cut(s)	134
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	2 cut(s)	418, 586
BmgT120I	GGNCC	4 cut(s)	144, 418, 532, 586
BmiI	GGNNCC	3 cut(s)	146, 420, 568
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	3 cut(s)	61, 301, 460
BplI	GAGNNNNNCTC	4 cut(s)	13, 45, 55, 87
BpmI	CTGGAG	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	140, 552, 562
BsaWI	WCCGGW	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	310
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	140, 552, 562
BseGI	GGATG	3 cut(s)	534, 618, 646
BseJI	GATNNNNATC	1 cut(s)	645
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	37
BseYI	CCCAGC	4 cut(s)	48, 84, 93, 147
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	3 cut(s)	28, 145, 534
BsiSI	CCGG	2 cut(s)	318, 526
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	28, 145, 534
Bsp1286I	GDGCHC	2 cut(s)	571, 601
Bsp143I	GATC	1 cut(s)	625
Bsp19I	CCATGG	1 cut(s)	552
Bsp68I	TCGCGA	1 cut(s)	365
BspACI	CCGC	2 cut(s)	134, 572
BspANI	GGCC	3 cut(s)	28, 145, 534
BspFNI	CGCG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	146, 420, 568
BspPI	GGATC	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	140, 552, 562
BssMI	GATC	1 cut(s)	625
BssNI	GRCGYC	1 cut(s)	463
BssT1I	CCWWGG	2 cut(s)	140, 552
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	188, 251, 295
BstACI	GRCGYC	1 cut(s)	463
BstAFI	CTTAAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	552
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	3 cut(s)	534, 618, 646
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 133, 142, 531
BstNI	CCWGG	1 cut(s)	564
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	562
BstUI	CGCG	1 cut(s)	365
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	28, 145, 534
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	534, 618, 646
BtuMI	TCGCGA	1 cut(s)	365
CaiI	CAGNNNCTG	1 cut(s)	73
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	4 cut(s)	144, 418, 532, 586
CviAII	CATG	7 cut(s)	61, 481, 509, 553, 575, 690, 733
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
Eco130I	CCWWGG	2 cut(s)	140, 552
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	2 cut(s)	571, 601
Eco47I	GGWCC	2 cut(s)	418, 586
Eco57I	CTGAAG	1 cut(s)	417
Eco91I	GGTNACC	1 cut(s)	557
EcoO109I	RGGNCCY	2 cut(s)	144, 418
EcoO65I	GGTNACC	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	140, 552
EcoT38I	GRGCYC	2 cut(s)	571, 601
ErhI	CCWWGG	2 cut(s)	140, 552
FaeI	CATG	7 cut(s)	64, 484, 512, 556, 578, 693, 736
FaiI	YATR	9 cut(s)	62, 482, 503, 510, 554, 576, 606, 691, 734
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	7 cut(s)	60, 480, 508, 552, 574, 689, 732
FauI	CCCGC	1 cut(s)	579
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	3 cut(s)	541, 625, 653
FriOI	GRGCYC	2 cut(s)	571, 601
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	1 cut(s)	134
GsaI	CCCAGC	4 cut(s)	52, 88, 97, 151
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	3 cut(s)	28, 145, 534
HapII	CCGG	2 cut(s)	318, 526
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	7 cut(s)	64, 484, 512, 556, 578, 693, 736
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	64, 518, 653, 683
HpaII	CCGG	2 cut(s)	318, 526
HphI	GGTGA	2 cut(s)	431, 551
Hpy188I	TCNGA	2 cut(s)	162, 228
Hpy188III	TCNNGA	7 cut(s)	61, 301, 364, 467, 650, 664, 680
Hpy99I	CGWCG	2 cut(s)	365, 465
HpyAV	CCTTC	2 cut(s)	191, 379
HpyCH4III	ACNGT	3 cut(s)	188, 251, 295
HpyCH4IV	ACGT	2 cut(s)	360, 463
HpyCH4V	TGCA	2 cut(s)	473, 726
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 133, 142, 531
HpySE526I	ACGT	2 cut(s)	360, 463
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	7 cut(s)	64, 484, 512, 556, 578, 693, 736
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	2 cut(s)	566, 616
LweI	GCATC	3 cut(s)	61, 301, 460
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	2 cut(s)	360, 463
MaeIII	GTNAC	3 cut(s)	203, 289, 557
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	571, 601
MluCI	AATT	4 cut(s)	8, 176, 221, 244
MlyI	GAGTC	2 cut(s)	73, 527
MmeI	TCCRAC	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	2 cut(s)	11, 324
MslI	CAYNNNNRTG	1 cut(s)	731
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	2 cut(s)	318, 526
MspR9I	CCNGG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	4 cut(s)	94, 133, 142, 531
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	7 cut(s)	64, 484, 512, 556, 578, 693, 736
NlaIV	GGNNCC	3 cut(s)	146, 420, 568
NmuCI	GTSAC	3 cut(s)	203, 289, 557
NruI	TCGCGA	1 cut(s)	365
PagI	TCATGA	1 cut(s)	60
PceI	AGGCCT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	653, 683
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	2 cut(s)	72, 526
PpsI	GAGTC	2 cut(s)	72, 526
PpuMI	RGGWCCY	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	562
PspEI	GGTNACC	1 cut(s)	557
PspFI	CCCAGC	4 cut(s)	48, 84, 93, 147
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	3 cut(s)	146, 420, 568
PspPI	GGNCC	4 cut(s)	144, 418, 532, 586
PspPPI	RGGWCCY	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	73
RruI	TCGCGA	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	2 cut(s)	11, 324
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	4 cut(s)	144, 418, 532, 586
SchI	GAGTC	2 cut(s)	73, 527
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	2 cut(s)	571, 601
SetI	ASST	4 cut(s)	60, 333, 363, 466
SfaNI	GCATC	3 cut(s)	61, 301, 460
SinI	GGWCC	2 cut(s)	418, 586
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	8, 176, 221, 244
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	134, 572
SspI	AATATT	1 cut(s)	632
SspMI	CTAG	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	2 cut(s)	140, 552
TaaI	ACNGT	3 cut(s)	188, 251, 295
TaiI	ACGT	2 cut(s)	363, 466
TaqI	TCGA	2 cut(s)	174, 521
TasI	AATT	4 cut(s)	8, 176, 221, 244
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	653, 683
Tru1I	TTAA	2 cut(s)	11, 324
Tru9I	TTAA	2 cut(s)	11, 324
TseFI	GTSAC	3 cut(s)	203, 289, 557
Tsp45I	GTSAC	3 cut(s)	203, 289, 557
TspDTI	ATGAA	1 cut(s)	497
TspGWI	ACGGA	1 cut(s)	625
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	418, 586
XapI	RAATTY	2 cut(s)	176, 221
XmaJI	CCTAGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	1 cut(s)	141
ZraI	GACGTC	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.