Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007439

Physical Location & Seq

Genomic Coordinates Reverse (-)

1730247 .. 1738370

Gene Structure 8124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G021400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGGCGGGAACAGCAAACCCATACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGACCTTTAAGCCCCAAAACTCAAACCTTAATTCTCACTCTGAACACTCTGATGGACAAGTACCTAGTTCCTCAGAAGCCCTCGTCTCAAAACCCCAGCAGACCCCCTCCAAGATGGAGTCGAAGCCTGATCGAATTGAACGGAAGGCTCCATCCCAATTACCGACATTCCGTCTCTGGGTTGCTCATGGAATCCTATTCTGAGCTGAGGGCATTTCCGCATTTGTACCACATCAATGGTGGACCGTGTCAAACCCATTTGAATTGGATCGACAATGGCGCATTTTTGTATGACCAACCGTCAATTGGAAAGCAAGGGATATCTGCACTTGATTTTGACAGAAAGGGAATATACCTGGTATCTGTGACAAAATCGGGGTGTTTAACAGTGCATGATTTTGAATCTCTTTATTGCCAGAGTAATGAACCTTTGCTACGCTTGCAGGAAGATGAAGCAAAACATGTGGTGCACCTTTCTTTACCTCAACAACTAGACTTTGTCCAGTGGAATCTTGCTAACCAAGATGAGGTTGTTTGCACATCTATGAAAAGGAATGAAGTACTTATATTTGATATTGGTTATATCTCTTCTAAACCATCCAAGGTGTTAAGAACAAGACCTAGTGTTTCTGTTCTTGGGTCTAATATTCATAAAGGCCTTACTGATATTGTTACTTCACTTGACGATTCCAGGATACTGGCTTCTGATACATATGGTGTAATCAATGTATGGGACAGAAGAATGAGTGAATTTCCATGTCTTGAACTTACAACGGATTCCCGTGGCACCCTTAATAGTATACAATTAAATGCGGAGGATCAGATCATTTTTGGAGCTGGAAAGCGTGGATTTGTTTATGTATGGGATCTTCGTGGTGGAAGAACGTCTTCTGCTCTTCAGAGTAATAAAGAAATACGTCATCCGCCTTTAACTTCATTGAAGTTATCGTCAATGTTAGAGAAAATTGGGCCTCTGAAGGCACAATCAGACATTGTTTCTAAGGAAATACACTCCATTAATATTGATCCATCTTGCCCGCACCAATTGGCATTCCATCTTGATGATGGTTGGTCAGGTGTTTTGGATGTTTACAATTTTGAAGTTACGCATATTCATTGTCCTCCACCTGCTTGGTTAAATGATCCTGGCGTGTCAGCTGATCTGTTATATTTGAGAAAACCTTCATGGCTGCCAATAAATTCGATCTACGTGGTTGGATCATCAACCGACAATGGAATTCATATTTTGGATTTCTATCCAGATTCAAGCTCTCCTAGCCATGTGGACTACAAAGAGGATATACAGAGTCTTTCTGGGGTAAAGAAACAAGATAAGAAAAACAGGTTTGTTCCATTGTCTGAAGGAGTTACTGCATGTGCAGTTCATCCCCTCAACAGTACCATCATAGCTGGAACAAGGTGGTTCAATGAGTTTCAATTCACACATCCTCATACAATAAAAAGGCCTAACACTTTGGATTATTGCTTTCAGCATTCATCTTTGCTCATGATTTCTCAAAGTCACAAGTCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

530

Amino Acids

59.43

Weight (kDa)

8.63

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920
fragaria_vesca	FvH4_3g43320 FvH4_3g43320
malus_domestica	MD11G1027100.v1.1
prunus_persica	Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1
pyrus_communis	pycom11g02070
rosa_chinensis	RchiOBHm_Chr5g0077431
rosa_laevigata	RLG00000036696
rosa_multiflora	Rmu_sc0004277.1_g000083
rosa_roxburghii	Rroxscaffold_1G00004480
rosa_rugosa	Rorug05G0454900
rosa_samantha	Rh5AG509900 Rh5BG531500 Rh5CG555800 Rh5DG543600
rosa_wichuraiana	Rw5G046770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1189
Acc36I	ACCTGC	1 cut(s)	1189
AccB1I	GGYRCC	1 cut(s)	839
AccI	GTMKAC	1 cut(s)	853
AciI	CCGC	5 cut(s)	5, 272, 866, 977, 1091
AclWI	GGATC	6 cut(s)	329, 879, 927, 1073, 1190, 1279
AcsI	RAATTY	3 cut(s)	803, 1252, 1290
AcuI	CTGAAG	3 cut(s)	935, 1049, 1434
AfaI	GTAC	4 cut(s)	116, 281, 615, 1453
AfiI	CCNNNNNNNGG	3 cut(s)	231, 359, 580
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	9 cut(s)	193, 316, 455, 818, 994, 1154, 1320, 1480, 1490
AhdI	GACNNNNNGTC	2 cut(s)	224, 352
AjnI	CCWGG	3 cut(s)	408, 743, 1198
AluBI	AGCT	5 cut(s)	259, 890, 1211, 1323, 1463
AluI	AGCT	5 cut(s)	259, 890, 1211, 1323, 1463
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	2 cut(s)	144, 232
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	6 cut(s)	329, 879, 927, 1073, 1190, 1279
AoxI	GGCC	3 cut(s)	709, 1022, 1517
ApaLI	GTGCAC	1 cut(s)	521
ApeKI	GCWGC	1 cut(s)	1243
ApoI	RAATTY	3 cut(s)	803, 1252, 1290
AseI	ATTAAT	1 cut(s)	1071
Asp700I	GAANNNNTTC	2 cut(s)	940, 1234
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	3 cut(s)	56, 296, 1022
AvaII	GGWCC	2 cut(s)	56, 296
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	839
BarI	GAAGNNNNNNTAC	2 cut(s)	906, 938
BbsI	GAAGAC	1 cut(s)	933
Bbv12I	GWGCWC	1 cut(s)	525
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	1230
BccI	CCATC	8 cut(s)	100, 162, 213, 658, 1090, 1112, 1116, 1463
BciT130I	CCWGG	3 cut(s)	410, 745, 1200
BciVI	GTATCC	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	144, 232
BfaI	CTAG	4 cut(s)	119, 545, 675, 1329
BfuAI	ACCTGC	1 cut(s)	1189
BfuI	GTATCC	1 cut(s)	741
BisI	GCNGC	1 cut(s)	1244
BlsI	GCNGC	1 cut(s)	1245
BmcAI	AGTACT	1 cut(s)	615
Bme1390I	CCNGG	3 cut(s)	410, 745, 1200
Bme18I	GGWCC	2 cut(s)	56, 296
BmeRI	GACNNNNNGTC	2 cut(s)	224, 352
BmgT120I	GGNCC	3 cut(s)	56, 296, 1022
BmiI	GGNNCC	2 cut(s)	203, 841
BmrFI	CCNGG	3 cut(s)	410, 745, 1200
BpiI	GAAGAC	1 cut(s)	933
Bpu10I	CCTNAGC	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	1264
BsaBI	GATNNNNATC	1 cut(s)	1308
BsaJI	CCNNGG	2 cut(s)	654, 835
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 359, 580
Bse1I	ACTGG	2 cut(s)	556, 756
Bse8I	GATNNNNATC	1 cut(s)	1308
BseBI	CCWGG	3 cut(s)	410, 745, 1200
BseDI	CCNNGG	2 cut(s)	654, 835
BseGI	GGATG	6 cut(s)	205, 650, 973, 1144, 1438, 1498
BseJI	GATNNNNATC	1 cut(s)	1308
BseLI	CCNNNNNNNGG	3 cut(s)	231, 359, 580
BseMII	CTCAG	3 cut(s)	140, 246, 251
BseNI	ACTGG	2 cut(s)	556, 756
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	1230
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	2 cut(s)	363, 1452
BshFI	GGCC	3 cut(s)	711, 1024, 1519
BshNI	GGYRCC	1 cut(s)	839
BsiHKAI	GWGCWC	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	3 cut(s)	231, 359, 580
BsmAI	GTCTC	2 cut(s)	144, 232
BsmBI	CGTCTC	2 cut(s)	144, 232
BsmFI	GGGAC	1 cut(s)	800
BsmI	GAATGC	2 cut(s)	1103, 1546
BsnI	GGCC	3 cut(s)	711, 1024, 1519
Bsp1286I	GDGCHC	1 cut(s)	525
BspACI	CCGC	5 cut(s)	5, 272, 866, 977, 1091
BspANI	GGCC	3 cut(s)	711, 1024, 1519
BspCNI	CTCAG	3 cut(s)	139, 247, 252
BspHI	TCATGA	1 cut(s)	1560
BspLI	GGNNCC	2 cut(s)	203, 841
BspMI	ACCTGC	1 cut(s)	1189
BspPI	GGATC	6 cut(s)	329, 879, 927, 1073, 1190, 1279
BspQI	GCTCTTC	1 cut(s)	954
BspT107I	GGYRCC	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	556, 756
BssECI	CCNNGG	2 cut(s)	654, 835
BssNAI	GTATAC	1 cut(s)	854
BssT1I	CCWWGG	1 cut(s)	654
Bst1107I	GTATAC	1 cut(s)	854
Bst2UI	CCWGG	3 cut(s)	410, 745, 1200
Bst4CI	ACNGT	4 cut(s)	300, 354, 442, 1451
Bst6I	CTCTTC	2 cut(s)	646, 954
BstBAI	YACGTR	1 cut(s)	1264
BstC8I	GCNNGC	2 cut(s)	494, 1091
BstDEI	CTNAG	4 cut(s)	126, 255, 260, 1053
BstDSI	CCRYGG	1 cut(s)	835
BstF5I	GGATG	6 cut(s)	205, 650, 973, 1144, 1438, 1498
BstHHI	GCGC	1 cut(s)	335
BstMAI	GTCTC	2 cut(s)	144, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 493, 1329
BstNI	CCWGG	3 cut(s)	410, 745, 1200
BstNSI	RCATGY	2 cut(s)	518, 1431
BstSCI	CCNGG	3 cut(s)	408, 743, 1198
BstSLI	GKGCMC	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	1230
BstV2I	GAAGAC	1 cut(s)	933
BstX2I	RGATCY	1 cut(s)	919
BstXI	CCANNNNNNTGG	3 cut(s)	290, 751, 1185
BstYI	RGATCY	1 cut(s)	919
BstZ17I	GTATAC	1 cut(s)	854
BsuI	GTATCC	1 cut(s)	741
BsuRI	GGCC	3 cut(s)	711, 1024, 1519
BtgI	CCRYGG	1 cut(s)	835
BtsCI	GGATG	6 cut(s)	205, 650, 973, 1144, 1438, 1498
BtsIMutI	CAGTG	2 cut(s)	447, 563
BveI	ACCTGC	1 cut(s)	1189
Cac8I	GCNNGC	2 cut(s)	494, 1091
CciI	TCATGA	1 cut(s)	1560
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	3 cut(s)	56, 296, 1022
CsiI	ACCWGGT	1 cut(s)	408
Csp6I	GTAC	4 cut(s)	115, 280, 614, 1452
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	9 cut(s)	241, 446, 515, 810, 1239, 1334, 1428, 1561, 1584
CviQI	GTAC	4 cut(s)	115, 280, 614, 1452
DdeI	CTNAG	4 cut(s)	126, 255, 260, 1053
DriI	GACNNNNNGTC	2 cut(s)	224, 352
Eam1104I	CTCTTC	2 cut(s)	646, 954
Eam1105I	GACNNNNNGTC	2 cut(s)	224, 352
EarI	CTCTTC	2 cut(s)	646, 954
EciI	GGCGGA	1 cut(s)	966
Eco130I	CCWWGG	1 cut(s)	654
Eco147I	AGGCCT	2 cut(s)	711, 1519
Eco32I	GATATC	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	56, 296
Eco57I	CTGAAG	3 cut(s)	935, 1049, 1434
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	1290
EcoRII	CCWGG	3 cut(s)	408, 743, 1198
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	654
Esp3I	CGTCTC	2 cut(s)	144, 232
FaeI	CATG	9 cut(s)	244, 449, 518, 813, 1242, 1337, 1431, 1564, 1587
FalI	AAGNNNNNCTT	2 cut(s)	925, 957
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	9 cut(s)	240, 445, 514, 809, 1238, 1333, 1427, 1560, 1583
FauI	CCCGC	1 cut(s)	1098
FauNDI	CATATG	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	853
Fnu4HI	GCNGC	1 cut(s)	1244
FokI	GGATG	6 cut(s)	192, 637, 960, 1151, 1425, 1485
Fsp4HI	GCNGC	1 cut(s)	1244
FspBI	CTAG	4 cut(s)	119, 545, 675, 1329
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	1244
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	711, 1024, 1519
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	9 cut(s)	244, 449, 518, 813, 1242, 1337, 1431, 1564, 1587
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	8 cut(s)	172, 245, 455, 562, 740, 830, 1316, 1360
Hpy166II	GTNNAC	5 cut(s)	296, 523, 854, 1144, 1339
Hpy188III	TCNNGA	4 cut(s)	815, 1112, 1313, 1561
Hpy8I	GTNNAC	5 cut(s)	296, 523, 854, 1144, 1339
HpyAV	CCTTC	4 cut(s)	192, 1024, 1245, 1409
HpyCH4III	ACNGT	4 cut(s)	300, 354, 442, 1451
HpyCH4IV	ACGT	3 cut(s)	938, 970, 1263
HpyCH4V	TGCA	7 cut(s)	380, 445, 496, 523, 591, 1427, 1433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 493, 1329
HpyF3I	CTNAG	4 cut(s)	126, 255, 260, 1053
HpySE526I	ACGT	3 cut(s)	938, 970, 1263
Hsp92II	CATG	9 cut(s)	244, 449, 518, 813, 1242, 1337, 1431, 1564, 1587
HspAI	GCGC	1 cut(s)	333
LguI	GCTCTTC	1 cut(s)	954
LmnI	GCTCC	2 cut(s)	207, 887
Lsp1109I	GCAGC	1 cut(s)	1230
MabI	ACCWGGT	1 cut(s)	408
MaeI	CTAG	4 cut(s)	119, 545, 675, 1329
MaeII	ACGT	3 cut(s)	938, 970, 1263
MaeIII	GTNAC	5 cut(s)	418, 724, 1156, 1420, 1574
MboII	GAAGA	7 cut(s)	512, 633, 804, 914, 933, 941, 945
MfeI	CAATTG	2 cut(s)	357, 1097
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	1 cut(s)	525
MlyI	GAGTC	2 cut(s)	181, 1369
MmeI	TCCRAC	1 cut(s)	1249
MroXI	GAANNNNTTC	2 cut(s)	940, 1234
MslI	CAYNNNNRTG	4 cut(s)	104, 288, 596, 1113
MspA1I	CMGCKG	1 cut(s)	1211
MspR9I	CCNGG	3 cut(s)	410, 745, 1200
MunI	CAATTG	2 cut(s)	357, 1097
Mva1269I	GAATGC	2 cut(s)	1103, 1546
MvaI	CCWGG	3 cut(s)	410, 745, 1200
MwoI	GCNNNNNNNGC	3 cut(s)	11, 493, 1329
NdeI	CATATG	1 cut(s)	766
NlaIII	CATG	9 cut(s)	244, 449, 518, 813, 1242, 1337, 1431, 1564, 1587
NlaIV	GGNNCC	2 cut(s)	203, 841
NmuCI	GTSAC	2 cut(s)	418, 1574
NspI	RCATGY	2 cut(s)	518, 1431
PagI	TCATGA	1 cut(s)	1560
PaqCI	CACCTGC	1 cut(s)	1189
PceI	AGGCCT	2 cut(s)	711, 1519
PciI	ACATGT	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	954
PctI	GAATGC	2 cut(s)	1103, 1546
PdmI	GAANNNNTTC	2 cut(s)	940, 1234
PfeI	GAWTC	6 cut(s)	245, 455, 562, 740, 830, 1316
PflFI	GACNNNGTC	2 cut(s)	300, 551
PfoI	TCCNGGA	1 cut(s)	743
PkrI	GCNGC	1 cut(s)	1245
PleI	GAGTC	2 cut(s)	180, 1368
PpsI	GAGTC	2 cut(s)	180, 1368
Ppu21I	YACGTR	1 cut(s)	1264
PpuMI	RGGWCCY	1 cut(s)	56
PscI	ACATGT	1 cut(s)	514
PshBI	ATTAAT	1 cut(s)	1071
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	3 cut(s)	408, 743, 1198
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	3 cut(s)	408, 743, 1198
PspN4I	GGNNCC	2 cut(s)	203, 841
PspPI	GGNCC	3 cut(s)	56, 296, 1022
PspPPI	RGGWCCY	1 cut(s)	56
PsrI	GAACNNNNNNTAC	2 cut(s)	471, 503
PsuI	RGATCY	1 cut(s)	919
PsyI	GACNNNGTC	2 cut(s)	300, 551
PvuII	CAGCTG	1 cut(s)	1211
RsaI	GTAC	4 cut(s)	116, 281, 615, 1453
RsaNI	GTAC	4 cut(s)	115, 280, 614, 1452
RseI	CAYNNNNRTG	4 cut(s)	104, 288, 596, 1113
SapI	GCTCTTC	1 cut(s)	954
SatI	GCNGC	1 cut(s)	1244
Sau96I	GGNCC	3 cut(s)	56, 296, 1022
ScaI	AGTACT	1 cut(s)	615
SchI	GAGTC	2 cut(s)	181, 1369
ScrFI	CCNGG	3 cut(s)	410, 745, 1200
SduI	GDGCHC	1 cut(s)	525
SexAI	ACCWGGT	1 cut(s)	408
SinI	GGWCC	2 cut(s)	56, 296
SmiMI	CAYNNNNRTG	4 cut(s)	104, 288, 596, 1113
SseBI	AGGCCT	2 cut(s)	711, 1519
SsiI	CCGC	5 cut(s)	5, 272, 866, 977, 1091
SspI	AATATT	2 cut(s)	700, 1075
SspMI	CTAG	4 cut(s)	119, 545, 675, 1329
StuI	AGGCCT	2 cut(s)	711, 1519
StyD4I	CCNGG	3 cut(s)	408, 743, 1198
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	4 cut(s)	300, 354, 442, 1451
TaiI	ACGT	3 cut(s)	941, 973, 1266
TaqI	TCGA	4 cut(s)	175, 186, 324, 1256
TatI	WGTACW	1 cut(s)	613
TfiI	GAWTC	6 cut(s)	245, 455, 562, 740, 830, 1316
TscAI	CASTG	2 cut(s)	447, 563
TseFI	GTSAC	2 cut(s)	418, 1574
TseI	GCWGC	1 cut(s)	1243
Tsp45I	GTSAC	2 cut(s)	418, 1574
TspGWI	ACGGA	3 cut(s)	210, 214, 842
TspRI	CASTG	2 cut(s)	447, 563
Tth111I	GACNNNGTC	2 cut(s)	300, 551
VneI	GTGCAC	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	56, 296
VspI	ATTAAT	1 cut(s)	1071
XapI	RAATTY	3 cut(s)	803, 1252, 1290
XceI	RCATGY	2 cut(s)	518, 1431
XcmI	CCANNNNNNNNNTGG	3 cut(s)	290, 356, 1115
XmiI	GTMKAC	1 cut(s)	853
XmnI	GAANNNNTTC	2 cut(s)	940, 1234
XspI	CTAG	4 cut(s)	119, 545, 675, 1329
ZrmI	AGTACT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.