Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007439

Physical Location & Seq

Genomic Coordinates Reverse (-)

1776109 .. 1782611

Gene Structure 6503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02070.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGCATGCAGGTGTGGATAACTTGGAAACGGACATGGATAAACAAAAGGCGACGGTGACGGGGTATGTAGATCAAAGGAAGGTGTTAAAGGTTGTGGGAGAAGAACAGGGAGGAGGGCCGGATTTTGGCTGTTCCCATACGACGGCGAATACTATCCAAAACCCCAAATTCAAACCTCTCAATTCGCACACTGACACTTTCATGGAAAAATACTTGGTCAGTCTCAAGCCCTCGTCTCAAAATCCCAGCAAACCTATCTCACGGTGCAGATGGAGTCGGAGCATGATCGAACTGAACGGAAGATTCGAGCCCAATTATCGCCATTCTGTCTCCGGTTTACTCATGGAATCATATTCGGAGCTTAAGAAATTTCCGCATTTGTACCACTTCAATGGCGGACCGTGTCAAACCCATTTGAATTGGATCGACAATGGAGCGTTTCTTTATCACCAAGCGCCAATCACAAAGCAAGGAATCTCTGCACTGGATTTTGACCAAAAGGGAATATACCTGGCATCTGTGACAAAATCAGGGTGCTTAACAGTGCATGATTTCGAAACTCTTTATTGCCAGAGTAATGAACCTTTGCACCGCTTGAAGGAAGATGAATCAAAACATGTGGTGCACCTTTCTTTCGATCAACAACTAGACTTTGTTCGGTGGAATCTTGCTAATCAAGATGAGGTTGTTTGCACATCTACAAAAAGGAATGAAGTACTTATATTTGATATTAGTTATATCTCATCTAAACCATCCCAGGTGTTAAGGACAAGACATAGTGTTTCTGTCTTTGGGTCTAATATTCATAAAGGCCTTACTGATATTGCTTCTACTTCACTTGACGATTCCAGAATACTGGCTTCTGATACACATGGTGCAATCAACGTATGGGACAGAAGAAAGAGCACATTTCCATGTCTTGAACTCACTACAGATTCCCGTGGAACCCTTAATAGTATACAATTGAATGTGGAAAATCAGATCGTTTTTGGAGCTGGAAAGAATGGATTTATTTATATATGGGATCTTCGTGGTGGAAGAACATCTTCTACTCTTCAGAGTAATAAAGAAATACGTCATCCACCTCTAACATCATTGAAGTTATCATCAATGTTAGAGAAAATTGGGCCTCTGAAGGCACAATCAGACATTATTTCTAAGGAGATACAATCCATAAATCTCGATCCATCTTGCCCGCATCAGTTGGCATTCCACCTTGATGATGGTTGGTCAGGTGTTTTGGATGTTTATAATTTTCAAGTTACACATATTCATTGTCCTCCGCCTGCTTGGTTAAATGATTCTGGTGTATCAGCTGATCTGTTATATTTGAGAAAACCTTCATGGCTGCCAATAAATTCGATCTATGTGGTTGGATCATCAACTGACAGTGGGATTTATATTTTGGATTTCTATCCCGATTCAAGCTCTCCTAGCCATGTGGACTACATAGACGATGCACAAAATCTTTCTGGGGTAAAGAATCAAGAGAAGAAAAACAGGTTTCTTCCATTGTCAGAAAGGGTTACAGCATGTGCAGCTCATCCTCTCAACAGTACCATCATTGCTGGAACAAGGAATTCATCTTTGCTCGTGATTTCGCAAAGTCACAAGTCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

541

Amino Acids

60.34

Weight (kDa)

6.76

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920
fragaria_vesca	FvH4_3g43320 FvH4_3g43320
malus_domestica	MD11G1027100.v1.1
prunus_persica	Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1
pyrus_communis	pycom11g02070
rosa_chinensis	RchiOBHm_Chr5g0077431
rosa_laevigata	RLG00000036696
rosa_multiflora	Rmu_sc0004277.1_g000083
rosa_roxburghii	Rroxscaffold_1G00004480
rosa_rugosa	Rorug05G0454900
rosa_samantha	Rh5AG509900 Rh5BG531500 Rh5CG555800 Rh5DG543600
rosa_wichuraiana	Rw5G046770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1251
AccI	GTMKAC	1 cut(s)	958
AciI	CCGC	5 cut(s)	374, 396, 592, 1196, 1283
AclWI	GGATC	4 cut(s)	431, 1032, 1178, 1384
AcsI	RAATTY	4 cut(s)	167, 368, 1357, 1579
AcuI	CTGAAG	2 cut(s)	1040, 1154
AdeI	CACNNNGTG	1 cut(s)	875
AfaI	GTAC	3 cut(s)	383, 717, 1558
AfiI	CCNNNNNNNGG	3 cut(s)	125, 142, 598
AflII	CTTAAG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	9 cut(s)	172, 391, 418, 598, 923, 967, 1099, 1259, 1425
AjnI	CCWGG	2 cut(s)	510, 756
AluBI	AGCT	5 cut(s)	361, 995, 1316, 1428, 1541
AluI	AGCT	5 cut(s)	361, 995, 1316, 1428, 1541
Alw21I	GWGCWC	2 cut(s)	627, 908
Alw26I	GTCTC	3 cut(s)	227, 240, 334
Alw44I	GTGCAC	1 cut(s)	623
AlwI	GGATC	4 cut(s)	431, 1032, 1178, 1384
AoxI	GGCC	3 cut(s)	116, 811, 1127
ApaLI	GTGCAC	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	1348, 1538
ApoI	RAATTY	4 cut(s)	167, 368, 1357, 1579
Asp700I	GAANNNNTTC	2 cut(s)	1045, 1339
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	3 cut(s)	116, 398, 1127
AsuHPI	GGTGA	2 cut(s)	67, 440
AsuII	TTCGAA	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	312
BauI	CACGAG	1 cut(s)	1592
Bbv12I	GWGCWC	2 cut(s)	627, 908
BbvI	GCAGC	2 cut(s)	1335, 1550
BccI	CCATC	5 cut(s)	264, 760, 1195, 1217, 1568
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	2 cut(s)	512, 758
BcoDI	GTCTC	3 cut(s)	227, 240, 334
BfaI	CTAG	2 cut(s)	647, 1434
BfmI	CTRYAG	1 cut(s)	930
BfoI	RGCGCY	1 cut(s)	458
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	2 cut(s)	1349, 1539
BlsI	GCNGC	2 cut(s)	1350, 1540
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	2 cut(s)	512, 758
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	116, 398, 1127
BmiI	GGNNCC	1 cut(s)	946
BmrFI	CCNGG	2 cut(s)	512, 758
BmsI	GCATC	3 cut(s)	524, 1207, 1447
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	1413
BsaJI	CCNNGG	2 cut(s)	756, 940
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 142, 598
Bse1I	ACTGG	2 cut(s)	489, 861
Bse3DI	GCAATG	1 cut(s)	1563
Bse8I	GATNNNNATC	1 cut(s)	1413
BseBI	CCWGG	2 cut(s)	512, 758
BseDI	CCNNGG	2 cut(s)	756, 940
BseGI	GGATG	4 cut(s)	752, 1078, 1249, 1543
BseJI	GATNNNNATC	1 cut(s)	1413
BseLI	CCNNNNNNNGG	3 cut(s)	125, 142, 598
BseMI	GCAATG	1 cut(s)	1563
BseNI	ACTGG	2 cut(s)	489, 861
BseRI	GAGGAG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	2 cut(s)	1335, 1550
BseYI	CCCAGC	1 cut(s)	245
BsgI	GTGCAG	3 cut(s)	286, 465, 1557
BshFI	GGCC	3 cut(s)	118, 813, 1129
BsiHKAI	GWGCWC	2 cut(s)	627, 908
BsiSI	CCGG	2 cut(s)	119, 333
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	3 cut(s)	125, 142, 598
BsmAI	GTCTC	3 cut(s)	227, 240, 334
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	905
BsmI	GAATGC	1 cut(s)	1208
BsnI	GGCC	3 cut(s)	118, 813, 1129
Bsp119I	TTCGAA	1 cut(s)	555
Bsp1286I	GDGCHC	3 cut(s)	312, 627, 908
BspACI	CCGC	5 cut(s)	374, 396, 592, 1196, 1283
BspANI	GGCC	3 cut(s)	118, 813, 1129
BspLI	GGNNCC	1 cut(s)	946
BspPI	GGATC	4 cut(s)	431, 1032, 1178, 1384
BspT104I	TTCGAA	1 cut(s)	555
BspTI	CTTAAG	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	1563
BsrI	ACTGG	2 cut(s)	489, 861
BssECI	CCNNGG	2 cut(s)	756, 940
BssNAI	GTATAC	1 cut(s)	959
BssSI	CACGAG	1 cut(s)	1592
Bst1107I	GTATAC	1 cut(s)	959
Bst2BI	CACGAG	1 cut(s)	1592
Bst2UI	CCWGG	2 cut(s)	512, 758
Bst4CI	ACNGT	6 cut(s)	55, 264, 402, 544, 1391, 1556
Bst6I	CTCTTC	1 cut(s)	1059
BstAFI	CTTAAG	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	6, 1196, 1287
BstDEI	CTNAG	1 cut(s)	1158
BstDSI	CCRYGG	1 cut(s)	940
BstF5I	GGATG	4 cut(s)	752, 1078, 1249, 1543
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstMAI	GTCTC	3 cut(s)	227, 240, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	1434, 1538
BstNI	CCWGG	2 cut(s)	512, 758
BstNSI	RCATGY	3 cut(s)	8, 620, 1536
BstSCI	CCNGG	2 cut(s)	510, 756
BstSFI	CTRYAG	1 cut(s)	930
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	1335, 1550
BstX2I	RGATCY	1 cut(s)	1024
BstXI	CCANNNNNNTGG	2 cut(s)	392, 856
BstYI	RGATCY	1 cut(s)	1024
BstZ17I	GTATAC	1 cut(s)	959
BsuRI	GGCC	3 cut(s)	118, 813, 1129
BtgI	CCRYGG	1 cut(s)	940
BtsCI	GGATG	4 cut(s)	752, 1078, 1249, 1543
BtsIMutI	CAGTG	4 cut(s)	189, 482, 549, 1396
Cac8I	GCNNGC	3 cut(s)	6, 1196, 1287
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	116, 398, 1127
CpoI	CGGWCCG	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	382, 716, 1557
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CspI	CGGWCCG	1 cut(s)	398
CviQI	GTAC	3 cut(s)	382, 716, 1557
DdeI	CTNAG	1 cut(s)	1158
DraIII	CACNNNGTG	1 cut(s)	875
Eam1104I	CTCTTC	1 cut(s)	1059
EarI	CTCTTC	1 cut(s)	1059
EciI	GGCGGA	2 cut(s)	411, 1272
Eco147I	AGGCCT	1 cut(s)	813
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	2 cut(s)	1040, 1154
EcoRI	GAATTC	1 cut(s)	1579
EcoRII	CCWGG	2 cut(s)	510, 756
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	240
FalI	AAGNNNNNCTT	2 cut(s)	1030, 1062
FaqI	GGGAC	1 cut(s)	905
FauI	CCCGC	1 cut(s)	1203
FblI	GTMKAC	1 cut(s)	958
Fnu4HI	GCNGC	2 cut(s)	1349, 1539
FokI	GGATG	4 cut(s)	739, 1065, 1256, 1530
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	1349, 1539
FspBI	CTAG	2 cut(s)	647, 1434
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	2 cut(s)	1349, 1539
GsaI	CCCAGC	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	118, 813, 1129
HapII	CCGG	2 cut(s)	119, 333
HhaI	GCGC	1 cut(s)	457
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HpaII	CCGG	2 cut(s)	119, 333
HphI	GGTGA	2 cut(s)	67, 440
Hpy166II	GTNNAC	4 cut(s)	338, 625, 959, 1444
Hpy188I	TCNGA	8 cut(s)	279, 358, 865, 981, 1059, 1134, 1147, 1519
Hpy188III	TCNNGA	7 cut(s)	677, 849, 920, 1181, 1418, 1487, 1594
Hpy8I	GTNNAC	4 cut(s)	338, 625, 959, 1444
Hpy99I	CGWCG	2 cut(s)	55, 145
HpyAV	CCTTC	4 cut(s)	73, 592, 1129, 1350
HpyCH4III	ACNGT	6 cut(s)	55, 264, 402, 544, 1391, 1556
HpyCH4IV	ACGT	2 cut(s)	885, 1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1434, 1538
HpyF3I	CTNAG	1 cut(s)	1158
HpySE526I	ACGT	2 cut(s)	885, 1075
HspAI	GCGC	1 cut(s)	455
LmnI	GCTCC	4 cut(s)	279, 358, 434, 992
Lsp1109I	GCAGC	2 cut(s)	1335, 1550
LweI	GCATC	3 cut(s)	524, 1207, 1447
MaeI	CTAG	2 cut(s)	647, 1434
MaeII	ACGT	2 cut(s)	885, 1075
MaeIII	GTNAC	5 cut(s)	55, 520, 1261, 1525, 1607
MfeI	CAATTG	1 cut(s)	962
MflI	RGATCY	1 cut(s)	1024
MhlI	GDGCHC	3 cut(s)	312, 627, 908
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	2 cut(s)	257, 1354
MnlI	CCTC	9 cut(s)	104, 107, 186, 241, 676, 1095, 1140, 1290, 1557
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	1045, 1339
MseI	TTAA	7 cut(s)	86, 363, 539, 764, 951, 1295, 1621
MslI	CAYNNNNRTG	5 cut(s)	9, 200, 390, 913, 1218
MspA1I	CMGCKG	1 cut(s)	1316
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	119, 333
MspR9I	CCNGG	2 cut(s)	512, 758
MunI	CAATTG	1 cut(s)	962
Mva1269I	GAATGC	1 cut(s)	1208
MvaI	CCWGG	2 cut(s)	512, 758
MwoI	GCNNNNNNNGC	2 cut(s)	1434, 1538
NlaIV	GGNNCC	1 cut(s)	946
NmuCI	GTSAC	3 cut(s)	55, 520, 1607
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	8, 620, 1536
NspV	TTCGAA	1 cut(s)	555
PaeI	GCATGC	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	813
PciI	ACATGT	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	1 cut(s)	1208
PdmI	GAANNNNTTC	2 cut(s)	1045, 1339
PflFI	GACNNNGTC	1 cut(s)	402
PkrI	GCNGC	2 cut(s)	1350, 1540
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PscI	ACATGT	1 cut(s)	616
PsiI	TTATAA	1 cut(s)	1251
Psp6I	CCWGG	2 cut(s)	510, 756
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	2 cut(s)	510, 756
PspN4I	GGNNCC	1 cut(s)	946
PspPI	GGNCC	3 cut(s)	116, 398, 1127
PsrI	GAACNNNNNNTAC	2 cut(s)	1033, 1065
PsuI	RGATCY	1 cut(s)	1024
PsyI	GACNNNGTC	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	1316
RsaI	GTAC	3 cut(s)	383, 717, 1558
RsaNI	GTAC	3 cut(s)	382, 716, 1557
RseI	CAYNNNNRTG	5 cut(s)	9, 200, 390, 913, 1218
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SaqAI	TTAA	7 cut(s)	86, 363, 539, 764, 951, 1295, 1621
SatI	GCNGC	2 cut(s)	1349, 1539
Sau96I	GGNCC	3 cut(s)	116, 398, 1127
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	512, 758
SduI	GDGCHC	3 cut(s)	312, 627, 908
SfaNI	GCATC	3 cut(s)	524, 1207, 1447
SfcI	CTRYAG	1 cut(s)	930
SfuI	TTCGAA	1 cut(s)	555
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	5 cut(s)	9, 200, 390, 913, 1218
SmlI	CTYRAG	2 cut(s)	224, 362
SmoI	CTYRAG	2 cut(s)	224, 362
SphI	GCATGC	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	813
SsiI	CCGC	5 cut(s)	374, 396, 592, 1196, 1283
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	2 cut(s)	647, 1434
StuI	AGGCCT	1 cut(s)	813
StyD4I	CCNGG	2 cut(s)	510, 756
TaaI	ACNGT	6 cut(s)	55, 264, 402, 544, 1391, 1556
TaiI	ACGT	2 cut(s)	888, 1078
TaqI	TCGA	7 cut(s)	288, 306, 426, 555, 636, 1182, 1361
TatI	WGTACW	1 cut(s)	715
Tru1I	TTAA	7 cut(s)	86, 363, 539, 764, 951, 1295, 1621
Tru9I	TTAA	7 cut(s)	86, 363, 539, 764, 951, 1295, 1621
TscAI	CASTG	4 cut(s)	196, 489, 549, 1396
TseFI	GTSAC	3 cut(s)	55, 520, 1607
TseI	GCWGC	2 cut(s)	1348, 1538
Tsp45I	GTSAC	3 cut(s)	55, 520, 1607
TspDTI	ATGAA	8 cut(s)	190, 594, 621, 726, 794, 1262, 1332, 1572
TspGWI	ACGGA	2 cut(s)	44, 312
TspRI	CASTG	4 cut(s)	196, 489, 549, 1396
Tth111I	GACNNNGTC	1 cut(s)	402
Vha464I	CTTAAG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	4 cut(s)	167, 368, 1357, 1579
XceI	RCATGY	3 cut(s)	8, 620, 1536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1220
XmiI	GTMKAC	1 cut(s)	958
XmnI	GAANNNNTTC	2 cut(s)	1045, 1339
XspI	CTAG	2 cut(s)	647, 1434
ZrmI	AGTACT	1 cut(s)	717
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.