Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007439

Physical Location & Seq

Genomic Coordinates Forward (+)

83535562 .. 83541985

Gene Structure 6424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAAAAATTCTTACTCCCTCTCAAACCCTCATCTCAACTTTCCACCAAACCCATTCGAAGGCGAAGATGGCATCGGAGCCTCATCGAATTAAACGGAAAGCTCGAACCCAAGTACCGGCATTCCGTCTCTGGTTTACTCATGCAGTCCTATTCCGAGCTTAGGGCGTTTCGGCATTTGTACCACATTGACGGAAACCCGTGTGAAACCCATGTGAATCGGGTGGTGATTAATGGCGCGTACATACCCCCAAGTATAAAGGAAGGAGTTTCTGCCCTGGATTTTGACAACAAGGGGATATACCTGGCATCTGTGACAAGATCGGGGTGCTTAACGGTGCATGATTTTGAAACTCTTTATTGCCAGAGTAATGAACCATTGCTACGCTTGGAAGAAGATGAAGCAAAACATGTGCTGCACCTTTCTTTACATCAACAACTAGACTTTGTCCGGTGGAATTGTGCGAACCAAGATGAGGTTGTTTGCACATCTATGAAAAGGAATGAAGTACTTATATTTGACATTAGTTATATATCTTCTACACCATCCGAAGTTTTAAGAACAAAACCCCGTCCTGCTATCTTTGGGTCTAATATTCAGAAAGGTCTTTCTGATATTGCCTTTACCTCTTGTGAAGACTCAAGGGTACTTGCTTCTGATACAGATGGTGTTATTCATATATGGGACAGAAGAACTAGTACTTTTCCTTGTCTTGAACTTACAGCAAATTCCCGTGGCAGCCTTAATAGTATCCAATTAAATGTGGAAAATCAGATCATTTTTGGAGCTGGAAAGCATGGGGTGATCTATGCTTGGGATCTTCGTGGTGGGAGAACATCTTCTTTCTTCAAGGGTTCTAAGGAGGTATCTCGTCCACCTCTAACCTCACTGAAGTTATCATCAACATTGGAAAAAATTGGGCCTCTAACGAAAAAGAAAACATCCATTCTGGAAACAGATTTTCATCTGAATCAAATGGAGATGTACATTAGAAGACAAATCCTTTACATACTTGATGTGTCAGGCGTGCTGGATATTCATAATCTTGAAGTTACACATATTCATTGTCCTCCACCAGCTTGGTTAAATGAATCTGTTGGGTCAGATCTATCATATTTGAGAAAACCTTCATGGCTACCTACAAACTCTATATATGTGGTTGGATCATCAACTGACAACGGCATTCATATTTTGGATTTTTATCCAGATTCAAGCTCTCCTTGCCATGTTGACTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

414

Amino Acids

46.78

Weight (kDa)

7.66

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920 AT5G12920
fragaria_vesca	FvH4_3g43320 FvH4_3g43320
malus_domestica	MD11G1027100.v1.1
prunus_persica	Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1 Prupe.6G021400_v2.0.a1
pyrus_communis	pycom11g02070
rosa_chinensis	RchiOBHm_Chr5g0077431
rosa_laevigata	RLG00000036696
rosa_multiflora	Rmu_sc0004277.1_g000083
rosa_roxburghii	Rroxscaffold_1G00004480
rosa_rugosa	Rorug05G0454900
rosa_samantha	Rh5AG509900 Rh5BG531500 Rh5CG555800 Rh5DG543600
rosa_wichuraiana	Rw5G046770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	239
AclWI	GGATC	2 cut(s)	825, 1171
AcsI	RAATTY	2 cut(s)	8, 727
AcuI	CTGAAG	1 cut(s)	911
AfaI	GTAC	7 cut(s)	116, 182, 242, 510, 648, 700, 986
AfiI	CCNNNNNNNGG	4 cut(s)	60, 117, 162, 475
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	5 cut(s)	350, 716, 850, 1049, 1212
AhlI	ACTAGT	1 cut(s)	695
AjnI	CCWGG	2 cut(s)	276, 303
AluBI	AGCT	5 cut(s)	103, 160, 788, 1079, 1215
AluI	AGCT	5 cut(s)	103, 160, 788, 1079, 1215
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	825, 1171
AoxI	GGCC	1 cut(s)	920
ApeKI	GCWGC	2 cut(s)	415, 738
ApoI	RAATTY	2 cut(s)	8, 727
AseI	ATTAAT	1 cut(s)	231
Asp700I	GAANNNNTTC	2 cut(s)	838, 1126
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	920
AsuHPI	GGTGA	2 cut(s)	238, 814
AsuII	TTCGAA	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	98, 131
BarI	GAAGNNNNNNTAC	2 cut(s)	682, 714
BbsI	GAAGAC	2 cut(s)	642, 1000
BbvI	GCAGC	2 cut(s)	402, 750
BccI	CCATC	3 cut(s)	63, 553, 659
BceAI	ACGGC	1 cut(s)	1195
BciT130I	CCWGG	2 cut(s)	278, 305
BciVI	GTATCC	1 cut(s)	761
BcoDI	GTCTC	1 cut(s)	133
BcuI	ACTAGT	1 cut(s)	695
BfaI	CTAG	2 cut(s)	440, 696
BfuI	GTATCC	1 cut(s)	761
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	2 cut(s)	416, 739
BlsI	GCNGC	2 cut(s)	417, 740
BmcAI	AGTACT	2 cut(s)	510, 700
Bme1390I	CCNGG	2 cut(s)	278, 305
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	278, 305
BmsI	GCATC	2 cut(s)	82, 317
BpiI	GAAGAC	2 cut(s)	642, 1000
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	625
BsaBI	GATNNNNATC	2 cut(s)	963, 1200
BsaJI	CCNNGG	2 cut(s)	276, 733
BsaWI	WCCGGW	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 117, 162, 475
Bse118I	RCCGGY	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	377
Bse8I	GATNNNNATC	2 cut(s)	963, 1200
BseBI	CCWGG	2 cut(s)	278, 305
BseDI	CCNNGG	2 cut(s)	276, 733
BseGI	GGATG	2 cut(s)	545, 941
BseJI	GATNNNNATC	2 cut(s)	963, 1200
BseLI	CCNNNNNNNGG	4 cut(s)	60, 117, 162, 475
BseMI	GCAATG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	402, 750
BsgI	GTGCAG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	922
BsiSI	CCGG	2 cut(s)	118, 451
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	4 cut(s)	60, 117, 162, 475
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	698
BsmI	GAATGC	2 cut(s)	121, 1182
BsnI	GGCC	1 cut(s)	922
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	984
Bsp143I	GATC	6 cut(s)	320, 774, 804, 817, 1105, 1163
BspANI	GGCC	1 cut(s)	922
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	825, 1171
BspT104I	TTCGAA	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	984
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	276, 733
BssMI	GATC	6 cut(s)	320, 774, 804, 817, 1105, 1163
Bst2UI	CCWGG	2 cut(s)	278, 305
Bst4CI	ACNGT	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	984
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	1028
BstDEI	CTNAG	2 cut(s)	161, 858
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	2 cut(s)	545, 941
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	6 cut(s)	323, 777, 807, 820, 1108, 1166
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	6 cut(s)	320, 774, 804, 817, 1105, 1163
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 1221
BstNI	CCWGG	2 cut(s)	278, 305
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	276, 303
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	402, 750
BstV2I	GAAGAC	2 cut(s)	642, 1000
BstX2I	RGATCY	2 cut(s)	817, 1105
BstXI	CCANNNNNNTGG	1 cut(s)	1080
BstYI	RGATCY	2 cut(s)	817, 1105
BsuI	GTATCC	1 cut(s)	761
BsuRI	GGCC	1 cut(s)	922
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	2 cut(s)	545, 941
BtsIMutI	CAGTG	1 cut(s)	887
Cac8I	GCNNGC	1 cut(s)	1028
CfoI	GCGC	1 cut(s)	239
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	920
Csp6I	GTAC	7 cut(s)	115, 181, 241, 509, 647, 699, 985
CviAII	CATG	7 cut(s)	142, 212, 341, 410, 797, 1131, 1226
CviJI	RGCY	9 cut(s)	81, 103, 160, 741, 788, 922, 1079, 1135, 1215
CviKI_1	RGCY	9 cut(s)	81, 103, 160, 741, 788, 922, 1079, 1135, 1215
CviQI	GTAC	7 cut(s)	115, 181, 241, 509, 647, 699, 985
DdeI	CTNAG	2 cut(s)	161, 858
DpnI	GATC	6 cut(s)	322, 776, 806, 819, 1107, 1165
DpnII	GATC	6 cut(s)	320, 774, 804, 817, 1105, 1163
Eco57I	CTGAAG	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	276, 303
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	7 cut(s)	145, 215, 344, 413, 800, 1134, 1229
FalI	AAGNNNNNCTT	2 cut(s)	1204, 1236
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	7 cut(s)	141, 211, 340, 409, 796, 1130, 1225
Fnu4HI	GCNGC	2 cut(s)	416, 739
FokI	GGATG	2 cut(s)	532, 928
Fsp4HI	GCNGC	2 cut(s)	416, 739
FspBI	CTAG	2 cut(s)	440, 696
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	2 cut(s)	416, 739
HaeIII	GGCC	1 cut(s)	922
HapII	CCGG	2 cut(s)	118, 451
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	7 cut(s)	145, 215, 344, 413, 800, 1134, 1229
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	1231
HindII	GTYRAC	1 cut(s)	1231
HinfI	GANTC	5 cut(s)	217, 638, 970, 1091, 1208
HpaII	CCGG	2 cut(s)	118, 451
HphI	GGTGA	2 cut(s)	238, 814
Hpy166II	GTNNAC	3 cut(s)	137, 875, 1231
Hpy188I	TCNGA	9 cut(s)	78, 157, 550, 600, 613, 658, 774, 969, 1105
Hpy188III	TCNNGA	4 cut(s)	713, 950, 1046, 1205
Hpy8I	GTNNAC	3 cut(s)	137, 875, 1231
HpyAV	CCTTC	3 cut(s)	54, 257, 1137
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	4 cut(s)	145, 340, 418, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 1221
HpyF3I	CTNAG	2 cut(s)	161, 858
Hsp92II	CATG	7 cut(s)	145, 215, 344, 413, 800, 1134, 1229
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	6 cut(s)	320, 774, 804, 817, 1105, 1163
LmnI	GCTCC	2 cut(s)	78, 785
Lsp1109I	GCAGC	2 cut(s)	402, 750
LweI	GCATC	2 cut(s)	82, 317
MaeI	CTAG	2 cut(s)	440, 696
MaeIII	GTNAC	2 cut(s)	313, 1051
MalI	GATC	6 cut(s)	322, 776, 806, 819, 1107, 1165
MboI	GATC	6 cut(s)	320, 774, 804, 817, 1105, 1163
MflI	RGATCY	2 cut(s)	817, 1105
MluCI	AATT	6 cut(s)	8, 89, 457, 727, 755, 915
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	1141
MroXI	GAANNNNTTC	2 cut(s)	838, 1126
MseI	TTAA	7 cut(s)	92, 231, 332, 557, 744, 758, 1085
MslI	CAYNNNNRTG	1 cut(s)	491
MspI	CCGG	2 cut(s)	118, 451
MspR9I	CCNGG	2 cut(s)	278, 305
Mva1269I	GAATGC	2 cut(s)	121, 1182
MvaI	CCWGG	2 cut(s)	278, 305
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	70, 1221
NdeII	GATC	6 cut(s)	320, 774, 804, 817, 1105, 1163
NlaIII	CATG	7 cut(s)	145, 215, 344, 413, 800, 1134, 1229
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	58
PciI	ACATGT	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	2 cut(s)	121, 1182
PdmI	GAANNNNTTC	2 cut(s)	838, 1126
PfeI	GAWTC	4 cut(s)	217, 970, 1091, 1208
PflFI	GACNNNGTC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	417, 740
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
PscI	ACATGT	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	276, 303
PspGI	CCWGG	2 cut(s)	276, 303
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	920
PsrI	GAACNNNNNNTAC	2 cut(s)	366, 398
PsuI	RGATCY	2 cut(s)	817, 1105
PsyI	GACNNNGTC	1 cut(s)	446
RsaI	GTAC	7 cut(s)	116, 182, 242, 510, 648, 700, 986
RsaNI	GTAC	7 cut(s)	115, 181, 241, 509, 647, 699, 985
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	7 cut(s)	92, 231, 332, 557, 744, 758, 1085
SatI	GCNGC	2 cut(s)	416, 739
Sau3AI	GATC	6 cut(s)	320, 774, 804, 817, 1105, 1163
Sau96I	GGNCC	1 cut(s)	920
ScaI	AGTACT	2 cut(s)	510, 700
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	2 cut(s)	278, 305
SfaNI	GCATC	2 cut(s)	82, 317
SfuI	TTCGAA	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SpeI	ACTAGT	1 cut(s)	695
Sse9I	AATT	6 cut(s)	8, 89, 457, 727, 755, 915
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	2 cut(s)	440, 696
StyD4I	CCNGG	2 cut(s)	276, 303
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	3 cut(s)	58, 87, 105
TasI	AATT	6 cut(s)	8, 89, 457, 727, 755, 915
TatI	WGTACW	3 cut(s)	508, 698, 984
TfiI	GAWTC	4 cut(s)	217, 970, 1091, 1208
Tru1I	TTAA	7 cut(s)	92, 231, 332, 557, 744, 758, 1085
Tru9I	TTAA	7 cut(s)	92, 231, 332, 557, 744, 758, 1085
TscAI	CASTG	1 cut(s)	894
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	415, 738
Tsp45I	GTSAC	1 cut(s)	313
TspGWI	ACGGA	3 cut(s)	111, 115, 207
TspRI	CASTG	1 cut(s)	894
Tth111I	GACNNNGTC	1 cut(s)	446
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	2 cut(s)	8, 727
XceI	RCATGY	1 cut(s)	413
XmnI	GAANNNNTTC	2 cut(s)	838, 1126
XspI	CTAG	2 cut(s)	440, 696
ZrmI	AGTACT	2 cut(s)	510, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.